Wall clock time and date at job start Mon Mar 30 2020 03:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46619 * 2 1 4 4 C 1.53002 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47239 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46928 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.49071 * 55.02902 * 6 5 4 8 8 C 1.53098 * 109.47772 * 175.05417 * 6 5 4 9 9 C 1.53176 * 109.16241 * 177.59090 * 8 6 5 10 10 C 1.53186 * 109.03702 * 303.01937 * 9 8 6 11 11 C 1.53095 * 109.16108 * 56.98084 * 10 9 8 12 12 H 1.09002 * 109.48237 * 62.37430 * 11 10 9 13 13 C 1.50698 * 109.48746 * 182.40603 * 11 10 9 14 14 H 1.08002 * 120.00448 * 359.96649 * 13 11 10 15 15 C 1.37876 * 119.99862 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00094 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00000 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47526 * 89.99852 * 17 15 13 19 19 H 1.48508 * 109.47128 * 209.99832 * 17 15 13 20 20 H 1.48506 * 109.47220 * 329.99336 * 17 15 13 21 21 O 1.42900 * 109.48024 * 294.99264 * 6 5 4 22 22 H 1.08999 * 109.47203 * 60.00167 * 1 2 3 23 23 H 1.09006 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47262 * 300.00152 * 1 2 3 25 25 H 1.08996 * 109.47262 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.46953 * 119.99361 * 2 1 3 27 27 H 1.08996 * 109.47427 * 59.99949 * 3 2 1 28 28 H 1.08999 * 109.47197 * 299.99837 * 3 2 1 29 29 H 1.08996 * 109.47286 * 59.99643 * 4 3 2 30 30 H 1.09001 * 109.46619 * 299.99347 * 4 3 2 31 31 H 1.08996 * 109.47387 * 59.99565 * 5 4 3 32 32 H 1.08999 * 109.46928 * 299.99642 * 5 4 3 33 33 H 1.08997 * 109.52277 * 297.49904 * 8 6 5 34 34 H 1.08996 * 109.52424 * 57.62316 * 8 6 5 35 35 H 1.08997 * 109.54457 * 62.88684 * 9 8 6 36 36 H 1.09000 * 109.54683 * 183.06411 * 9 8 6 37 37 H 1.08997 * 109.52047 * 297.07383 * 10 9 8 38 38 H 1.09002 * 109.52405 * 176.88363 * 10 9 8 39 39 H 0.97008 * 120.00259 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 1 5.9735 2.2965 -0.8422 8 6 6.1203 4.3231 -0.1238 9 6 7.6509 4.3204 -0.0625 10 6 8.0975 3.6553 1.2432 11 6 7.5106 2.2431 1.3141 12 1 7.8991 1.6461 0.4891 13 6 7.8966 1.6034 2.6229 14 1 8.5005 2.1487 3.3331 15 6 7.4790 0.3220 2.9135 16 7 6.7433 -0.3419 2.0488 17 14 7.9581 -0.4712 4.5354 18 1 6.9252 -0.1688 5.5586 19 1 8.0613 -1.9418 4.3559 20 1 9.2688 0.0662 4.9812 21 8 6.0864 2.3154 1.2208 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.6765 1.9563 0.8899 28 1 1.6765 1.9563 -0.8900 29 1 3.9329 0.9289 -0.8908 30 1 3.9335 0.9287 0.8892 31 1 3.7168 3.3984 0.8904 32 1 3.7162 3.3994 -0.8896 33 1 5.7946 4.7447 -1.0747 34 1 5.7232 4.9225 0.6954 35 1 8.0488 3.7628 -0.9104 36 1 8.0190 5.3458 -0.0954 37 1 7.7411 4.2409 2.0906 38 1 9.1857 3.5993 1.2698 39 1 6.4491 -1.2433 2.2535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308704250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:12 Heat of formation + Delta-G solvation = -93.899804 kcal Electronic energy + Delta-G solvation = -16347.448670 eV Core-core repulsion = 13867.233573 eV Total energy + Delta-G solvation = -2480.215097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.24940 -35.72691 -33.18181 -32.49376 -31.76805 -29.56143 -26.67746 -25.07405 -22.83679 -21.63574 -20.56511 -20.19607 -19.14708 -16.52842 -15.57451 -14.87002 -14.66874 -14.26637 -13.80380 -13.61933 -13.25277 -13.13809 -12.76768 -12.37305 -12.01470 -11.70429 -11.58927 -11.22329 -10.94072 -10.83500 -10.63038 -10.55153 -10.48048 -10.31450 -10.26463 -10.15129 -9.90624 -9.67504 -9.32522 -8.78247 -8.43025 -7.76321 -5.96300 -4.07934 3.33583 3.39886 3.42543 4.45371 5.01746 5.07695 5.21809 5.36520 5.48245 5.54521 5.64497 5.66548 5.78389 5.82632 5.93234 6.03268 6.03935 6.10567 6.20872 6.24228 6.35377 6.38599 6.40186 6.47221 6.53942 6.57019 6.68481 6.81833 6.90339 6.95182 6.98974 7.02282 7.21412 7.58328 7.94525 8.35222 8.84961 9.22890 9.61924 11.11073 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.009108 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.983397 B = 3073.570495 C = 4494.293922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.115 4.115 5 C -0.102 4.102 6 C 0.084 3.916 7 H 0.037 0.963 8 C -0.146 4.146 9 C -0.120 4.120 10 C -0.144 4.144 11 C 0.220 3.780 12 H 0.011 0.989 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.079 3.921 16 N -0.858 5.858 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 O -0.350 6.350 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 4.168 -5.330 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.152 4.152 5 C -0.140 4.140 6 C 0.025 3.975 7 H 0.055 0.945 8 C -0.184 4.184 9 C -0.158 4.158 10 C -0.182 4.182 11 C 0.164 3.836 12 H 0.029 0.971 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.127 4.127 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 O -0.269 6.269 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.205 3.931 -5.224 9.729 hybrid contribution 0.391 -0.294 0.597 0.772 sum -6.814 3.637 -4.626 9.003 Atomic orbital electron populations 1.21783 0.96609 1.01051 1.01351 1.21534 0.94955 0.97609 1.02253 1.21619 0.96774 0.96053 1.00974 1.21508 0.93325 0.96891 1.03519 1.21497 0.94620 0.97184 1.00702 1.21814 0.93307 0.91456 0.90946 0.94486 1.22197 0.96346 0.99190 1.00629 1.21605 0.95593 0.99465 0.99111 1.22255 1.00026 1.00268 0.95600 1.19656 0.78234 0.88725 0.96999 0.97108 1.21000 1.33087 0.98587 1.03672 0.91990 1.25043 0.94097 0.97069 0.96487 1.70041 1.33761 1.11195 1.34429 0.86664 0.78962 0.78402 0.84327 1.20543 1.21196 1.19827 1.88333 1.24301 1.80703 1.33552 0.93169 0.93201 0.92986 0.92287 0.91754 0.92499 0.93028 0.92868 0.89658 0.92095 0.92692 0.92949 0.92039 0.92854 0.93393 0.92630 0.92682 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.13 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.12 -1.71 5.21 -26.73 -0.14 -1.85 16 4 C -0.11 -2.07 5.11 -26.73 -0.14 -2.21 16 5 C -0.10 -1.82 4.92 -26.73 -0.13 -1.96 16 6 C 0.08 1.74 2.64 -26.68 -0.07 1.67 16 7 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -2.63 5.42 -26.59 -0.14 -2.77 16 9 C -0.12 -2.21 6.03 -26.54 -0.16 -2.37 16 10 C -0.14 -3.13 5.36 -26.59 -0.14 -3.27 16 11 C 0.22 5.76 2.50 -27.83 -0.07 5.69 16 12 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 13 C -0.53 -14.96 8.79 -34.44 -0.30 -15.26 16 14 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -25.14 12.84 55.43 0.71 -24.43 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 O -0.35 -9.02 8.97 -35.23 -0.32 -9.34 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.88 7.82 -51.93 -0.41 1.47 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -29.25 310.33 -8.69 -37.94 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.56 Total: -1.91 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -1.18 Total: -23.43 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.71 Total: -24.43 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.32 Total: -9.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.25 -8.69 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308704250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.961 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds