Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46946 * 2 1 4 4 C 1.53008 * 109.46968 * 185.35421 * 3 2 1 5 5 C 1.52998 * 109.89719 * 300.04613 * 4 3 2 6 6 C 1.52995 * 109.47141 * 300.34600 * 5 4 3 7 7 C 1.54381 * 109.82562 * 179.11377 * 4 3 2 8 8 C 1.55305 * 102.25278 * 261.84138 * 7 4 3 9 9 C 1.54953 * 100.94095 * 325.87190 * 8 7 4 10 10 C 1.53004 * 110.30883 * 277.42644 * 9 8 7 11 11 C 1.50705 * 110.30688 * 155.35841 * 9 8 7 12 12 H 1.07996 * 120.00404 * 7.81624 * 11 9 8 13 13 C 1.37879 * 119.99780 * 187.81700 * 11 9 8 14 14 N 1.31513 * 119.99934 * 198.84724 * 13 11 9 15 15 Si 1.86804 * 119.99986 * 18.85009 * 13 11 9 16 16 H 1.48501 * 109.47124 * 179.97438 * 15 13 11 17 17 H 1.48492 * 109.47154 * 300.00057 * 15 13 11 18 18 H 1.48506 * 109.46920 * 60.00109 * 15 13 11 19 19 O 1.43381 * 109.88639 * 60.91904 * 4 3 2 20 20 H 1.09001 * 109.47025 * 179.97438 * 1 2 3 21 21 H 1.09010 * 109.47276 * 299.99377 * 1 2 3 22 22 H 1.08994 * 109.47474 * 59.99788 * 1 2 3 23 23 H 1.09010 * 109.47276 * 240.00623 * 2 1 3 24 24 H 1.08994 * 109.47474 * 120.00212 * 2 1 3 25 25 H 1.08998 * 109.46644 * 65.35766 * 3 2 1 26 26 H 1.08999 * 109.47574 * 305.35377 * 3 2 1 27 27 H 1.09004 * 109.47179 * 60.34432 * 5 4 3 28 28 H 1.08999 * 109.46986 * 180.34780 * 5 4 3 29 29 H 1.09006 * 109.47442 * 304.65339 * 6 5 4 30 30 H 1.09007 * 109.47749 * 64.64884 * 6 5 4 31 31 H 1.08999 * 109.47269 * 184.65175 * 6 5 4 32 32 H 1.08997 * 110.84645 * 143.65652 * 7 4 3 33 33 H 1.08994 * 111.03042 * 20.11101 * 7 4 3 34 34 H 1.08997 * 111.12819 * 207.95317 * 8 7 4 35 35 H 1.09003 * 111.16154 * 83.80081 * 8 7 4 36 36 H 1.09003 * 109.47029 * 297.66289 * 10 9 8 37 37 H 1.08993 * 109.46671 * 57.65846 * 10 9 8 38 38 H 1.08991 * 109.46744 * 177.66358 * 10 9 8 39 39 H 0.96996 * 119.99864 * 354.87996 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5640 1.4447 -0.1346 5 6 4.1913 0.6867 1.0371 6 6 3.7928 1.3599 2.3519 7 6 4.0856 2.8975 -0.1579 8 6 4.2666 3.1584 -1.6781 9 6 4.6998 1.7536 -2.1681 10 6 6.1993 1.5511 -1.9412 11 6 4.3645 1.5823 -3.6273 12 1 4.0061 2.4239 -4.2015 13 6 4.5154 0.3511 -4.2294 14 7 4.5886 0.2644 -5.5396 15 14 4.6157 -1.1937 -3.1840 16 1 4.7751 -2.3783 -4.0653 17 1 5.7806 -1.0970 -2.2683 18 1 3.3702 -1.3341 -2.3874 19 8 3.9453 0.8270 -1.3711 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.7570 1.9278 0.9341 26 1 1.6004 1.9834 -0.8381 27 1 3.8366 -0.3441 1.0346 28 1 5.2767 0.6977 0.9376 29 1 4.0742 2.4126 2.3210 30 1 2.7149 1.2760 2.4911 31 1 4.3053 0.8710 3.1804 32 1 5.0386 2.9759 0.3652 33 1 3.3533 3.5828 0.2688 34 1 5.0482 3.8961 -1.8598 35 1 3.3273 3.4630 -2.1397 36 1 6.7573 2.2819 -2.5268 37 1 6.4276 1.6823 -0.8836 38 1 6.4810 0.5451 -2.2519 39 1 4.4623 1.0559 -6.0858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379527909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = -74.786633 kcal Electronic energy + Delta-G solvation = -17457.220111 eV Core-core repulsion = 14977.833824 eV Total energy + Delta-G solvation = -2479.386287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.47119 -35.32548 -32.79421 -32.26082 -31.21926 -29.45203 -26.86216 -25.21235 -23.78001 -22.76421 -21.06601 -19.31602 -18.65172 -17.28969 -15.59421 -15.06754 -14.50655 -14.21960 -13.52474 -13.49774 -13.02154 -12.88497 -12.70105 -12.20774 -11.93202 -11.82409 -11.66833 -11.50234 -11.14842 -11.00677 -10.87615 -10.82811 -10.64430 -10.16681 -10.12232 -9.92180 -9.80851 -9.61012 -9.13019 -9.05635 -8.26203 -8.07177 -6.41152 -4.11259 3.61465 3.65459 3.89616 4.64788 4.77577 5.19467 5.23745 5.30438 5.41623 5.47835 5.57517 5.58748 5.70013 5.74930 5.88458 5.93278 6.07167 6.12023 6.15190 6.19738 6.26997 6.33203 6.34129 6.39134 6.50439 6.56338 6.58804 6.64552 6.74866 6.84841 6.92094 6.95310 6.99050 7.46715 8.11770 8.34285 8.45978 8.96208 9.63357 10.96873 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.012383 C = 0.010473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.920899 B = 2260.653391 C = 2672.937198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.113 4.113 4 C 0.108 3.892 5 C -0.129 4.129 6 C -0.149 4.149 7 C -0.144 4.144 8 C -0.130 4.130 9 C 0.200 3.800 10 C -0.154 4.154 11 C -0.594 4.594 12 H 0.060 0.940 13 C 0.042 3.958 14 N -0.901 5.901 15 Si 1.071 2.929 16 H -0.307 1.307 17 H -0.280 1.280 18 H -0.272 1.272 19 O -0.369 6.369 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 2.234 13.840 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.150 4.150 4 C 0.068 3.932 5 C -0.167 4.167 6 C -0.206 4.206 7 C -0.182 4.182 8 C -0.168 4.168 9 C 0.163 3.837 10 C -0.212 4.212 11 C -0.631 4.631 12 H 0.078 0.922 13 C -0.164 4.164 14 N -0.535 5.535 15 Si 0.903 3.097 16 H -0.236 1.236 17 H -0.207 1.207 18 H -0.199 1.199 19 O -0.290 6.290 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.844 0.421 13.693 13.991 hybrid contribution -0.206 2.029 0.111 2.042 sum -3.050 2.449 13.803 14.347 Atomic orbital electron populations 1.21769 0.96825 1.00923 1.01106 1.21540 0.94653 0.97370 1.02707 1.21843 0.95145 0.97119 1.00941 1.21879 0.93238 0.91350 0.86715 1.21894 1.00655 1.00150 0.93978 1.21808 1.01258 1.00627 0.96907 1.23129 1.00511 0.96470 0.98076 1.23131 1.01064 0.99457 0.93171 1.20352 0.87761 0.84363 0.91251 1.22402 0.98638 1.02209 0.97910 1.21864 1.51248 0.98235 0.91730 0.92175 1.25918 0.91603 1.01975 0.96913 1.70930 1.43412 1.33911 1.05206 0.83636 0.78243 0.73893 0.73946 1.23601 1.20688 1.19869 1.88477 1.73122 1.40150 1.27248 0.93309 0.93579 0.92871 0.90375 0.92650 0.92306 0.91770 0.91566 0.92066 0.92779 0.92634 0.93295 0.91630 0.91774 0.92116 0.91604 0.93071 0.95559 0.92321 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.15 0.37 -1.69 16 2 C -0.13 -2.05 5.36 -26.73 -0.14 -2.19 16 3 C -0.11 -1.87 3.99 -26.72 -0.11 -1.97 16 4 C 0.11 1.96 0.68 -89.89 -0.06 1.90 16 5 C -0.13 -2.05 4.86 -26.73 -0.13 -2.18 16 6 C -0.15 -1.86 9.28 37.16 0.34 -1.52 16 7 C -0.14 -2.44 4.55 -24.79 -0.11 -2.56 16 8 C -0.13 -2.65 6.02 -24.48 -0.15 -2.80 16 9 C 0.20 4.78 0.67 -90.74 -0.06 4.72 16 10 C -0.15 -3.47 8.56 37.16 0.32 -3.15 16 11 C -0.59 -16.90 8.67 -34.44 -0.30 -17.20 16 12 H 0.06 1.82 8.02 -52.49 -0.42 1.40 16 13 C 0.04 1.25 5.34 -17.82 -0.10 1.16 16 14 N -0.90 -28.13 13.70 55.43 0.76 -27.37 16 15 Si 1.07 27.77 24.94 -169.99 -4.24 23.53 16 16 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 17 H -0.28 -6.87 5.67 56.52 0.32 -6.55 16 18 H -0.27 -6.84 6.38 56.52 0.36 -6.48 16 19 O -0.37 -8.49 5.79 -35.23 -0.20 -8.69 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.08 1.54 7.04 -51.92 -0.37 1.18 16 24 H 0.05 0.83 6.77 -51.93 -0.35 0.48 16 25 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.07 6.62 -51.93 -0.34 0.73 16 28 H 0.06 1.01 8.02 -51.93 -0.42 0.59 16 29 H 0.05 0.65 6.98 -51.93 -0.36 0.29 16 30 H 0.05 0.66 6.72 -51.92 -0.35 0.31 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.04 7.29 -51.93 -0.38 0.67 16 33 H 0.06 0.95 7.83 -51.93 -0.41 0.55 16 34 H 0.06 1.16 8.03 -51.93 -0.42 0.75 16 35 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.03 0.51 7.35 -51.93 -0.38 0.13 16 38 H 0.06 1.40 5.01 -51.93 -0.26 1.14 16 39 H 0.27 8.19 8.73 -40.82 -0.36 7.84 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -30.17 289.33 -6.47 -36.64 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.02 Total: -0.98 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -0.12 Total: -27.49 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.76 Total: -27.37 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.20 Total: -8.69 kcal Atomic # 14 Polarization: 27.77 SS G_CDS: -4.24 Total: 23.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.17 -6.47 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379527909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.144 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds