Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46946 * 2 1 4 4 C 1.53008 * 109.46968 * 185.35421 * 3 2 1 5 5 C 1.52998 * 109.89719 * 300.04613 * 4 3 2 6 6 C 1.52995 * 109.47141 * 300.34600 * 5 4 3 7 7 C 1.54381 * 109.82562 * 179.11377 * 4 3 2 8 8 C 1.55305 * 102.25278 * 261.84138 * 7 4 3 9 9 C 1.54953 * 100.94095 * 325.87190 * 8 7 4 10 10 C 1.53004 * 110.30883 * 277.42644 * 9 8 7 11 11 C 1.50705 * 110.30688 * 155.35841 * 9 8 7 12 12 H 1.07996 * 120.00404 * 7.81624 * 11 9 8 13 13 C 1.37879 * 119.99780 * 187.81700 * 11 9 8 14 14 N 1.31513 * 119.99934 * 198.84724 * 13 11 9 15 15 Si 1.86804 * 119.99986 * 18.85009 * 13 11 9 16 16 H 1.48501 * 109.47124 * 179.97438 * 15 13 11 17 17 H 1.48492 * 109.47154 * 300.00057 * 15 13 11 18 18 H 1.48506 * 109.46920 * 60.00109 * 15 13 11 19 19 O 1.43381 * 109.88639 * 60.91904 * 4 3 2 20 20 H 1.09001 * 109.47025 * 179.97438 * 1 2 3 21 21 H 1.09010 * 109.47276 * 299.99377 * 1 2 3 22 22 H 1.08994 * 109.47474 * 59.99788 * 1 2 3 23 23 H 1.09010 * 109.47276 * 240.00623 * 2 1 3 24 24 H 1.08994 * 109.47474 * 120.00212 * 2 1 3 25 25 H 1.08998 * 109.46644 * 65.35766 * 3 2 1 26 26 H 1.08999 * 109.47574 * 305.35377 * 3 2 1 27 27 H 1.09004 * 109.47179 * 60.34432 * 5 4 3 28 28 H 1.08999 * 109.46986 * 180.34780 * 5 4 3 29 29 H 1.09006 * 109.47442 * 304.65339 * 6 5 4 30 30 H 1.09007 * 109.47749 * 64.64884 * 6 5 4 31 31 H 1.08999 * 109.47269 * 184.65175 * 6 5 4 32 32 H 1.08997 * 110.84645 * 143.65652 * 7 4 3 33 33 H 1.08994 * 111.03042 * 20.11101 * 7 4 3 34 34 H 1.08997 * 111.12819 * 207.95317 * 8 7 4 35 35 H 1.09003 * 111.16154 * 83.80081 * 8 7 4 36 36 H 1.09003 * 109.47029 * 297.66289 * 10 9 8 37 37 H 1.08993 * 109.46671 * 57.65846 * 10 9 8 38 38 H 1.08991 * 109.46744 * 177.66358 * 10 9 8 39 39 H 0.96996 * 119.99864 * 354.87996 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5640 1.4447 -0.1346 5 6 4.1913 0.6867 1.0371 6 6 3.7928 1.3599 2.3519 7 6 4.0856 2.8975 -0.1579 8 6 4.2666 3.1584 -1.6781 9 6 4.6998 1.7536 -2.1681 10 6 6.1993 1.5511 -1.9412 11 6 4.3645 1.5823 -3.6273 12 1 4.0061 2.4239 -4.2015 13 6 4.5154 0.3511 -4.2294 14 7 4.5886 0.2644 -5.5396 15 14 4.6157 -1.1937 -3.1840 16 1 4.7751 -2.3783 -4.0653 17 1 5.7806 -1.0970 -2.2683 18 1 3.3702 -1.3341 -2.3874 19 8 3.9453 0.8270 -1.3711 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.7570 1.9278 0.9341 26 1 1.6004 1.9834 -0.8381 27 1 3.8366 -0.3441 1.0346 28 1 5.2767 0.6977 0.9376 29 1 4.0742 2.4126 2.3210 30 1 2.7149 1.2760 2.4911 31 1 4.3053 0.8710 3.1804 32 1 5.0386 2.9759 0.3652 33 1 3.3533 3.5828 0.2688 34 1 5.0482 3.8961 -1.8598 35 1 3.3273 3.4630 -2.1397 36 1 6.7573 2.2819 -2.5268 37 1 6.4276 1.6823 -0.8836 38 1 6.4810 0.5451 -2.2519 39 1 4.4623 1.0559 -6.0858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379527909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -92.800317 kcal Electronic energy + Delta-G solvation = -17458.001243 eV Core-core repulsion = 14977.833824 eV Total energy + Delta-G solvation = -2480.167419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02560 -36.83927 -34.68651 -33.70004 -32.91372 -30.98943 -28.20809 -27.10014 -25.30199 -24.13655 -22.41731 -21.12129 -20.18843 -19.33757 -17.01032 -16.51717 -16.07380 -15.69221 -15.38213 -15.18280 -14.61682 -14.35062 -14.14079 -13.74080 -13.45406 -13.26819 -13.01525 -12.82659 -12.68029 -12.53078 -12.31610 -12.14573 -12.06191 -11.90163 -11.80721 -11.55934 -11.38823 -11.01993 -11.00911 -10.86709 -10.38908 -9.90075 -8.74252 -6.44577 1.49503 1.58726 1.84501 2.50662 2.97580 3.40739 3.84502 3.92434 4.04266 4.18403 4.32791 4.35262 4.43036 4.50197 4.61197 4.66291 4.75602 4.77495 4.85888 4.86644 4.91319 4.95747 4.99312 5.08212 5.16972 5.20234 5.24114 5.25759 5.31445 5.44671 5.48288 5.58380 5.66740 5.70425 5.98617 6.08723 6.44814 6.89705 7.37401 8.61990 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.012383 C = 0.010473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.920899 B = 2260.653391 C = 2672.937198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.110 4.110 4 C 0.093 3.907 5 C -0.126 4.126 6 C -0.142 4.142 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.193 3.807 10 C -0.149 4.149 11 C -0.595 4.595 12 H 0.024 0.976 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 1.107 2.893 16 H -0.315 1.315 17 H -0.256 1.256 18 H -0.266 1.266 19 O -0.392 6.392 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.040 0.960 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 2.603 17.705 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.148 4.148 4 C 0.054 3.946 5 C -0.164 4.164 6 C -0.199 4.199 7 C -0.167 4.167 8 C -0.169 4.169 9 C 0.155 3.845 10 C -0.207 4.207 11 C -0.633 4.633 12 H 0.043 0.957 13 C -0.203 4.203 14 N -0.573 5.573 15 Si 0.934 3.066 16 H -0.245 1.245 17 H -0.182 1.182 18 H -0.192 1.192 19 O -0.314 6.314 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.960 0.814 17.579 17.845 hybrid contribution -0.225 1.993 -1.086 2.280 sum -3.185 2.806 16.493 17.031 Atomic orbital electron populations 1.21740 0.95015 1.01778 1.01744 1.21507 0.96324 0.96990 1.01387 1.21856 0.93989 0.97230 1.01699 1.22302 0.94503 0.92297 0.85532 1.21862 1.00058 0.99876 0.94603 1.21771 1.02074 1.00935 0.95164 1.23110 1.02300 0.96019 0.95286 1.23041 1.00402 0.97544 0.95913 1.20230 0.88723 0.86713 0.88861 1.22294 0.97356 1.01048 0.99983 1.22126 1.49574 0.96679 0.94891 0.95747 1.27029 0.91389 1.04862 0.97061 1.71025 1.46671 1.33334 1.06228 0.83172 0.79439 0.70864 0.73075 1.24462 1.18157 1.19156 1.88359 1.73223 1.40381 1.29417 0.92443 0.91034 0.94102 0.94681 0.90905 0.88805 0.94084 0.92218 0.92626 0.91819 0.91693 0.91622 0.89749 0.89011 0.91106 0.93392 0.93189 0.92240 0.94128 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.82 5.36 30.59 0.16 -3.66 16 3 C -0.11 -3.35 3.99 30.60 0.12 -3.23 16 4 C 0.09 3.10 0.68 -10.32 -0.01 3.09 16 5 C -0.13 -3.52 4.86 30.59 0.15 -3.37 16 6 C -0.14 -2.80 9.28 71.98 0.67 -2.13 16 7 C -0.13 -3.91 4.55 31.85 0.14 -3.76 16 8 C -0.13 -5.16 6.02 32.05 0.19 -4.96 16 9 C 0.19 9.09 0.67 -10.87 -0.01 9.08 16 10 C -0.15 -6.48 8.56 71.98 0.62 -5.87 16 11 C -0.60 -34.97 8.67 25.60 0.22 -34.75 16 12 H 0.02 1.56 8.02 -2.91 -0.02 1.53 16 13 C 0.00 -0.23 5.34 84.66 0.45 0.22 16 14 N -0.94 -60.94 13.70 21.45 0.29 -60.64 16 15 Si 1.11 57.19 24.94 68.60 1.71 58.90 16 16 H -0.32 -16.50 7.11 99.48 0.71 -15.79 16 17 H -0.26 -12.12 5.67 99.48 0.56 -11.56 16 18 H -0.27 -13.28 6.38 99.48 0.63 -12.65 16 19 O -0.39 -17.60 5.79 -148.98 -0.86 -18.46 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.03 1.36 7.04 -2.38 -0.02 1.35 16 24 H 0.07 1.95 6.77 -2.39 -0.02 1.94 16 25 H 0.09 2.20 6.58 -2.39 -0.02 2.18 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.73 6.62 -2.39 -0.02 1.72 16 28 H 0.05 1.61 8.02 -2.39 -0.02 1.59 16 29 H 0.06 1.15 6.98 -2.38 -0.02 1.13 16 30 H 0.06 1.17 6.72 -2.38 -0.02 1.15 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 2.26 7.29 -2.39 -0.02 2.24 16 33 H 0.09 2.29 7.83 -2.39 -0.02 2.27 16 34 H 0.07 2.60 8.03 -2.39 -0.02 2.58 16 35 H 0.05 2.02 8.05 -2.39 -0.02 2.00 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.16 7.35 -2.39 -0.02 2.14 16 38 H 0.04 1.88 5.01 -2.39 -0.01 1.87 16 39 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 Total: -1.00 -67.99 289.33 5.31 -62.68 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.74 Total: 9.83 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 3.43 Total: -52.32 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.29 Total: -60.64 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.86 Total: -18.46 kcal Atomic # 14 Polarization: 57.19 SS G_CDS: 1.71 Total: 58.90 kcal Total: -67.99 5.31 -62.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379527909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.118 kcal (2) G-P(sol) polarization free energy of solvation -67.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds