Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47036 * 2 1 4 4 C 1.53003 * 109.46905 * 119.99761 * 2 1 3 5 5 C 1.52997 * 109.47111 * 65.00138 * 4 2 1 6 6 C 1.52995 * 109.47235 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.82529 * 59.11347 * 6 5 4 8 8 C 1.54379 * 109.83343 * 180.02562 * 6 5 4 9 9 C 1.55304 * 102.25791 * 140.95928 * 8 6 5 10 10 C 1.54944 * 100.97800 * 325.84617 * 9 8 6 11 11 H 1.09004 * 110.31156 * 277.54570 * 10 9 8 12 12 C 1.50698 * 110.30892 * 155.38055 * 10 9 8 13 13 H 1.07999 * 120.00126 * 0.02562 * 12 10 9 14 14 C 1.37878 * 120.00195 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99736 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00292 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46865 * 60.00240 * 16 14 12 18 18 H 1.48496 * 109.47238 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47250 * 300.00200 * 16 14 12 20 20 O 1.43243 * 109.90616 * 298.17697 * 6 5 4 21 21 H 1.08992 * 109.46983 * 59.99923 * 1 2 3 22 22 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46709 * 300.00111 * 1 2 3 24 24 H 1.08998 * 109.46855 * 239.99613 * 2 1 3 25 25 H 1.09000 * 109.46984 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47147 * 299.99599 * 3 2 1 27 27 H 1.08998 * 109.47614 * 60.00078 * 3 2 1 28 28 H 1.08994 * 109.47522 * 304.99888 * 4 2 1 29 29 H 1.09006 * 109.46679 * 184.99977 * 4 2 1 30 30 H 1.09007 * 109.47438 * 59.99408 * 5 4 2 31 31 H 1.08997 * 109.47219 * 300.00083 * 5 4 2 32 32 H 1.09005 * 109.47416 * 180.18696 * 7 6 5 33 33 H 1.08999 * 109.47312 * 300.18614 * 7 6 5 34 34 H 1.09002 * 109.47272 * 60.18555 * 7 6 5 35 35 H 1.09000 * 110.84895 * 22.76893 * 8 6 5 36 36 H 1.09001 * 111.02498 * 259.23282 * 8 6 5 37 37 H 1.09002 * 111.12488 * 83.78593 * 9 8 6 38 38 H 1.08995 * 111.12730 * 207.90588 * 9 8 6 39 39 H 0.97006 * 119.99670 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 6 2.1457 -2.9168 2.4370 7 6 1.5581 -2.2641 3.6898 8 6 1.7422 -4.4059 2.3835 9 6 3.0020 -5.1097 2.9574 10 6 4.1252 -4.1847 2.4249 11 1 4.3744 -4.4456 1.3963 12 6 5.3464 -4.2865 3.3019 13 1 5.3418 -4.9420 4.1601 14 6 6.4697 -3.5426 3.0087 15 7 6.4755 -2.7447 1.9632 16 14 7.9833 -3.6682 4.0962 17 1 8.4731 -5.0701 4.1028 18 1 9.0467 -2.7755 3.5696 19 1 7.6337 -3.2595 5.4803 20 8 3.5762 -2.8579 2.4838 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6054 -0.2617 2.1370 29 1 3.1264 -0.6443 1.2952 30 1 2.0698 -2.6550 0.3003 31 1 0.5490 -2.2723 1.1421 32 1 1.9280 -2.7801 4.5759 33 1 1.8572 -1.2166 3.7280 34 1 0.4706 -2.3305 3.6580 35 1 1.5560 -4.7207 1.3566 36 1 0.8713 -4.5979 3.0101 37 1 2.9846 -5.1192 4.0472 38 1 3.1033 -6.1195 2.5598 39 1 7.2657 -2.2211 1.7572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379601362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -82.173963 kcal Electronic energy + Delta-G solvation = -16664.560817 eV Core-core repulsion = 14184.854191 eV Total energy + Delta-G solvation = -2479.706626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.76695 -36.26004 -33.05339 -31.54279 -30.76932 -28.18215 -26.95389 -26.49702 -24.20416 -22.33165 -20.32657 -19.49143 -18.69877 -16.45457 -15.39512 -14.96371 -14.61250 -14.26533 -13.74201 -13.62813 -13.21031 -12.62772 -12.23581 -12.04676 -11.97051 -11.83198 -11.71037 -11.54560 -11.22137 -10.87331 -10.75675 -10.69751 -10.55055 -10.38066 -10.23850 -10.09679 -9.88813 -9.57317 -9.45108 -8.98781 -8.50574 -7.79058 -5.95408 -4.07897 3.34922 3.39382 3.41828 4.46302 4.96878 5.11628 5.22060 5.27133 5.48284 5.52667 5.58449 5.76701 5.80210 5.82711 5.97519 5.99359 6.04510 6.10337 6.16181 6.20605 6.25944 6.29698 6.43654 6.45604 6.53194 6.56881 6.67555 6.73386 6.77857 6.87165 6.92791 7.08428 7.12998 7.66790 7.94233 8.34185 8.74860 9.11910 9.62528 11.11880 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.007999 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.451168 B = 3499.559587 C = 4187.099484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.096 3.904 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.147 4.147 10 C 0.211 3.789 11 H 0.026 0.974 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.348 6.348 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 3.209 -2.186 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.152 4.152 6 C 0.055 3.945 7 C -0.204 4.204 8 C -0.185 4.185 9 C -0.185 4.185 10 C 0.156 3.844 11 H 0.044 0.956 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.127 4.127 15 N -0.499 5.499 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.267 6.267 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.464 3.528 -2.288 11.277 hybrid contribution 0.677 -0.216 0.546 0.896 sum -9.787 3.312 -1.742 10.478 Atomic orbital electron populations 1.21880 0.96060 1.01485 1.00870 1.21155 0.95128 0.96023 0.99432 1.21820 1.01342 0.96258 1.00829 1.21587 1.02506 0.94519 0.96018 1.21892 0.98939 0.95981 0.98343 1.21845 0.86472 0.92991 0.93142 1.22056 0.98558 1.01381 0.98369 1.23141 0.98593 0.96317 1.00490 1.23305 0.95397 0.99298 1.00509 1.20482 0.89950 0.78374 0.95564 0.95623 1.21075 0.96443 1.26375 1.13141 0.92200 1.25058 0.98420 0.94489 0.94754 1.70029 1.28823 1.25251 1.25835 0.86723 0.82546 0.77935 0.81110 1.20185 1.21223 1.20152 1.88829 1.12957 1.30728 1.94216 0.93529 0.92611 0.93071 0.91589 0.92498 0.93459 0.93066 0.92535 0.90367 0.92314 0.92719 0.92727 0.92384 0.93496 0.91984 0.92097 0.91841 0.92301 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.95 37.16 0.33 -1.43 16 2 C -0.10 -1.40 2.92 -90.62 -0.26 -1.67 16 3 C -0.15 -1.90 9.19 37.16 0.34 -1.55 16 4 C -0.11 -1.86 4.19 -26.73 -0.11 -1.97 16 5 C -0.11 -1.99 4.12 -26.74 -0.11 -2.10 16 6 C 0.10 1.92 0.93 -89.90 -0.08 1.84 16 7 C -0.15 -2.62 8.36 37.15 0.31 -2.31 16 8 C -0.15 -2.72 6.08 -24.79 -0.15 -2.87 16 9 C -0.15 -3.14 6.53 -24.48 -0.16 -3.30 16 10 C 0.21 5.55 3.22 -26.86 -0.09 5.47 16 11 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 12 C -0.53 -15.20 8.80 -34.44 -0.30 -15.50 16 13 H 0.06 1.66 7.76 -52.49 -0.41 1.25 16 14 C 0.08 2.25 5.43 -17.82 -0.10 2.16 16 15 N -0.86 -25.86 13.05 55.43 0.72 -25.13 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 O -0.35 -8.97 9.48 -35.23 -0.33 -9.30 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.92 6.44 -51.93 -0.33 0.59 16 29 H 0.08 1.62 7.75 -51.93 -0.40 1.22 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.83 6.56 -51.93 -0.34 0.48 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.04 6.44 -51.93 -0.33 0.71 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 36 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 37 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -29.88 305.21 -7.59 -37.47 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.18 Total: -1.05 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -0.38 Total: -23.24 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.72 Total: -25.13 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.33 Total: -9.30 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.88 -7.59 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379601362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.704 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds