Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.52998 * 109.47048 * 119.99944 * 2 1 3 5 5 C 1.53008 * 109.46726 * 175.00178 * 4 2 1 6 6 C 1.53008 * 109.46783 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.82470 * 305.70183 * 6 5 4 8 8 C 1.54376 * 109.82787 * 184.81051 * 6 5 4 9 9 C 1.55301 * 102.25413 * 219.03871 * 8 6 5 10 10 C 1.54948 * 100.94037 * 34.14019 * 9 8 6 11 11 H 1.08996 * 110.31228 * 82.57024 * 10 9 8 12 12 C 1.50707 * 110.30700 * 204.64178 * 10 9 8 13 13 H 1.08000 * 120.00002 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99712 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00074 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99815 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47068 * 120.00170 * 16 14 12 19 19 H 1.48497 * 109.47400 * 239.99649 * 16 14 12 20 20 O 1.43240 * 109.90159 * 66.63778 * 6 5 4 21 21 H 1.09004 * 109.47462 * 299.99649 * 1 2 3 22 22 H 1.09000 * 109.47522 * 60.00163 * 1 2 3 23 23 H 1.09006 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47161 * 240.00345 * 2 1 3 25 25 H 1.08999 * 109.47390 * 60.00176 * 3 2 1 26 26 H 1.09002 * 109.47429 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47357 * 300.00245 * 3 2 1 28 28 H 1.09000 * 109.47175 * 55.00522 * 4 2 1 29 29 H 1.08998 * 109.47068 * 294.99623 * 4 2 1 30 30 H 1.09000 * 109.47013 * 60.00244 * 5 4 2 31 31 H 1.08998 * 109.46894 * 299.99551 * 5 4 2 32 32 H 1.09002 * 109.47153 * 299.81293 * 7 6 5 33 33 H 1.09001 * 109.46832 * 179.81484 * 7 6 5 34 34 H 1.09004 * 109.47261 * 59.81465 * 7 6 5 35 35 H 1.09003 * 110.85125 * 337.23223 * 8 6 5 36 36 H 1.09003 * 110.84712 * 100.85616 * 8 6 5 37 37 H 1.09003 * 111.12719 * 152.05158 * 9 8 6 38 38 H 1.08996 * 111.12819 * 276.22029 * 9 8 6 39 39 H 0.97006 * 120.00045 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0749 -1.5517 2.4375 7 6 3.5550 -0.8464 3.6918 8 6 5.6186 -1.5606 2.4434 9 6 5.9380 -2.9788 2.9898 10 6 4.7675 -3.7963 2.3877 11 1 4.9927 -4.0784 1.3592 12 6 4.5047 -5.0246 3.2205 13 1 5.1038 -5.2208 4.0974 14 6 3.4994 -5.8978 2.8628 15 7 2.7696 -5.6585 1.7952 16 14 3.1741 -7.4206 3.8945 17 1 4.1262 -7.4596 5.0334 18 1 1.7830 -7.3795 4.4128 19 1 3.3547 -8.6337 3.0573 20 8 3.6343 -2.9146 2.4284 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7516 -0.1583 2.1369 30 1 3.9994 0.1676 1.1420 31 1 3.8531 -1.3939 0.3002 32 1 3.9107 0.1838 3.7032 33 1 3.9190 -1.3663 4.5781 34 1 2.4650 -0.8545 3.6878 35 1 6.0112 -1.4361 1.4342 36 1 6.0084 -0.7913 3.1101 37 1 6.8985 -3.3359 2.6182 38 1 5.9095 -2.9957 4.0792 39 1 2.0625 -6.2731 1.5433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379601363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -81.838811 kcal Electronic energy + Delta-G solvation = -16651.250206 eV Core-core repulsion = 14171.558114 eV Total energy + Delta-G solvation = -2479.692093 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.77911 -36.28388 -33.06100 -31.56011 -30.77008 -28.16103 -26.96922 -26.50385 -24.23787 -22.32936 -20.32283 -19.52496 -18.68264 -16.45939 -15.39653 -14.97436 -14.62671 -14.28315 -13.73322 -13.62678 -13.24193 -12.63932 -12.23934 -12.05446 -11.97624 -11.86239 -11.70373 -11.54871 -11.22225 -10.90862 -10.75247 -10.71537 -10.51567 -10.36902 -10.24819 -10.09611 -9.90543 -9.56633 -9.46078 -8.98380 -8.51671 -7.78853 -5.95738 -4.08066 3.32327 3.40184 3.43868 4.46175 4.96842 5.09961 5.20590 5.25741 5.48556 5.52569 5.58183 5.75651 5.79210 5.82010 5.96332 5.98230 6.03780 6.09370 6.14908 6.20469 6.24599 6.28680 6.42232 6.45230 6.51934 6.56681 6.67433 6.73020 6.77329 6.87028 6.91543 7.05084 7.12833 7.66869 7.94202 8.33915 8.75110 9.12172 9.62482 11.11613 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027919 B = 0.007865 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.659075 B = 3559.121576 C = 4222.482376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.096 3.904 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.147 4.147 10 C 0.211 3.789 11 H 0.026 0.974 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.889 3.111 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 O -0.347 6.347 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 11.408 -1.787 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.055 3.945 7 C -0.204 4.204 8 C -0.185 4.185 9 C -0.185 4.185 10 C 0.155 3.845 11 H 0.044 0.956 12 C -0.569 4.569 13 H 0.079 0.921 14 C -0.128 4.128 15 N -0.499 5.499 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 O -0.267 6.267 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.440 11.279 -1.898 11.446 hybrid contribution -0.015 -0.734 0.501 0.889 sum -0.455 10.545 -1.397 10.647 Atomic orbital electron populations 1.21823 0.95816 1.01762 1.00857 1.21153 0.95277 0.95890 0.99435 1.21878 1.01114 0.96425 1.00879 1.21618 0.95795 1.01180 0.96108 1.21901 0.95917 0.98886 0.98488 1.21859 0.91914 0.87554 0.93151 1.22072 1.01581 0.98444 0.98313 1.23143 0.96478 0.98420 1.00501 1.23305 1.00374 0.94166 1.00658 1.20486 0.80893 0.87810 0.95281 0.95621 1.21158 1.18364 1.04962 1.12411 0.92090 1.25063 0.95479 0.97555 0.94689 1.70050 1.19727 1.36085 1.24083 0.86606 0.78228 0.82968 0.80553 1.19698 1.20897 1.20966 1.88823 1.32644 1.10820 1.94426 0.93065 0.93427 0.92529 0.91547 0.93072 0.92587 0.93510 0.90578 0.92438 0.92707 0.92169 0.93485 0.92744 0.92309 0.91956 0.92081 0.92288 0.91830 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.19 37.16 0.34 -1.53 16 2 C -0.10 -1.39 2.92 -90.62 -0.26 -1.66 16 3 C -0.15 -1.74 8.95 37.16 0.33 -1.41 16 4 C -0.11 -1.84 4.09 -26.73 -0.11 -1.95 16 5 C -0.11 -2.00 4.15 -26.72 -0.11 -2.11 16 6 C 0.10 1.92 0.94 -89.90 -0.08 1.83 16 7 C -0.15 -2.63 8.22 37.16 0.31 -2.32 16 8 C -0.15 -2.72 6.09 -24.79 -0.15 -2.87 16 9 C -0.15 -3.14 6.53 -24.48 -0.16 -3.30 16 10 C 0.21 5.53 3.22 -26.85 -0.09 5.44 16 11 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 12 C -0.53 -15.17 8.79 -34.44 -0.30 -15.47 16 13 H 0.06 1.70 7.76 -52.49 -0.41 1.29 16 14 C 0.08 2.23 5.43 -17.82 -0.10 2.13 16 15 N -0.86 -25.89 13.05 55.43 0.72 -25.17 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 O -0.35 -8.98 9.67 -35.23 -0.34 -9.32 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.67 6.56 -51.93 -0.34 0.32 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 29 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 30 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.05 6.36 -51.93 -0.33 0.72 16 35 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 36 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.35 8.04 -51.93 -0.42 0.94 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -30.01 305.18 -7.60 -37.61 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.18 Total: -1.17 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.39 Total: -23.20 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.72 Total: -25.17 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.34 Total: -9.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.01 -7.60 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379601363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.228 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds