Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.52998 * 109.47048 * 119.99944 * 2 1 3 5 5 C 1.53008 * 109.46726 * 175.00178 * 4 2 1 6 6 C 1.53008 * 109.46783 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.82470 * 305.70183 * 6 5 4 8 8 C 1.54376 * 109.82787 * 184.81051 * 6 5 4 9 9 C 1.55301 * 102.25413 * 219.03871 * 8 6 5 10 10 C 1.54948 * 100.94037 * 34.14019 * 9 8 6 11 11 H 1.08996 * 110.31228 * 82.57024 * 10 9 8 12 12 C 1.50707 * 110.30700 * 204.64178 * 10 9 8 13 13 H 1.08000 * 120.00002 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99712 * 179.97438 * 12 10 9 15 15 N 1.31515 * 120.00074 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99815 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47068 * 120.00170 * 16 14 12 19 19 H 1.48497 * 109.47400 * 239.99649 * 16 14 12 20 20 O 1.43240 * 109.90159 * 66.63778 * 6 5 4 21 21 H 1.09004 * 109.47462 * 299.99649 * 1 2 3 22 22 H 1.09000 * 109.47522 * 60.00163 * 1 2 3 23 23 H 1.09006 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47161 * 240.00345 * 2 1 3 25 25 H 1.08999 * 109.47390 * 60.00176 * 3 2 1 26 26 H 1.09002 * 109.47429 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47357 * 300.00245 * 3 2 1 28 28 H 1.09000 * 109.47175 * 55.00522 * 4 2 1 29 29 H 1.08998 * 109.47068 * 294.99623 * 4 2 1 30 30 H 1.09000 * 109.47013 * 60.00244 * 5 4 2 31 31 H 1.08998 * 109.46894 * 299.99551 * 5 4 2 32 32 H 1.09002 * 109.47153 * 299.81293 * 7 6 5 33 33 H 1.09001 * 109.46832 * 179.81484 * 7 6 5 34 34 H 1.09004 * 109.47261 * 59.81465 * 7 6 5 35 35 H 1.09003 * 110.85125 * 337.23223 * 8 6 5 36 36 H 1.09003 * 110.84712 * 100.85616 * 8 6 5 37 37 H 1.09003 * 111.12719 * 152.05158 * 9 8 6 38 38 H 1.08996 * 111.12819 * 276.22029 * 9 8 6 39 39 H 0.97006 * 120.00045 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0749 -1.5517 2.4375 7 6 3.5550 -0.8464 3.6918 8 6 5.6186 -1.5606 2.4434 9 6 5.9380 -2.9788 2.9898 10 6 4.7675 -3.7963 2.3877 11 1 4.9927 -4.0784 1.3592 12 6 4.5047 -5.0246 3.2205 13 1 5.1038 -5.2208 4.0974 14 6 3.4994 -5.8978 2.8628 15 7 2.7696 -5.6585 1.7952 16 14 3.1741 -7.4206 3.8945 17 1 4.1262 -7.4596 5.0334 18 1 1.7830 -7.3795 4.4128 19 1 3.3547 -8.6337 3.0573 20 8 3.6343 -2.9146 2.4284 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7516 -0.1583 2.1369 30 1 3.9994 0.1676 1.1420 31 1 3.8531 -1.3939 0.3002 32 1 3.9107 0.1838 3.7032 33 1 3.9190 -1.3663 4.5781 34 1 2.4650 -0.8545 3.6878 35 1 6.0112 -1.4361 1.4342 36 1 6.0084 -0.7913 3.1101 37 1 6.8985 -3.3359 2.6182 38 1 5.9095 -2.9957 4.0792 39 1 2.0625 -6.2731 1.5433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379601363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -98.720467 kcal Electronic energy + Delta-G solvation = -16651.982250 eV Core-core repulsion = 14171.558114 eV Total energy + Delta-G solvation = -2480.424136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44838 -37.58542 -34.98853 -33.34974 -32.50162 -29.65241 -28.34293 -27.93336 -25.88832 -23.96898 -22.09526 -20.77701 -20.25163 -18.60155 -17.06952 -16.65713 -16.27173 -15.79811 -15.21281 -14.91370 -14.77394 -14.32924 -13.78869 -13.53401 -13.47691 -13.28986 -13.05753 -12.92964 -12.82449 -12.51598 -12.36321 -12.19244 -12.04780 -11.99029 -11.90987 -11.50020 -11.31595 -11.18366 -10.94021 -10.88180 -10.65913 -9.71742 -8.13823 -6.34315 1.38456 1.39603 1.52140 2.40395 3.06158 3.58688 3.85218 3.93345 4.09074 4.15237 4.19113 4.33698 4.39370 4.54648 4.69322 4.71250 4.78385 4.83341 4.87703 4.91070 4.94184 4.97709 5.03534 5.07762 5.14837 5.19699 5.25378 5.28807 5.34835 5.47300 5.52391 5.57213 5.66258 5.70369 5.78138 6.21552 6.66314 7.16739 7.42191 8.94071 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027919 B = 0.007865 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.659075 B = 3559.121576 C = 4222.482376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.103 4.103 5 C -0.107 4.107 6 C 0.077 3.923 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.140 4.140 10 C 0.203 3.797 11 H -0.014 1.014 12 C -0.553 4.553 13 H 0.062 0.938 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.960 3.040 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.275 1.275 20 O -0.384 6.384 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 13.350 -1.035 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.141 4.141 5 C -0.145 4.145 6 C 0.037 3.963 7 C -0.198 4.198 8 C -0.174 4.174 9 C -0.178 4.178 10 C 0.147 3.853 11 H 0.004 0.996 12 C -0.591 4.591 13 H 0.080 0.920 14 C -0.180 4.180 15 N -0.540 5.540 16 Si 0.785 3.215 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.201 1.201 20 O -0.304 6.304 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.111 13.231 -1.141 13.280 hybrid contribution -0.180 -1.297 0.239 1.332 sum -0.069 11.933 -0.902 11.968 Atomic orbital electron populations 1.21811 0.94982 1.01034 1.02289 1.21132 0.96071 0.97211 0.97277 1.21826 1.01244 0.94429 1.02209 1.21526 0.95320 0.99003 0.98215 1.21853 0.96370 0.99946 0.96323 1.22320 0.93465 0.85236 0.95309 1.22027 1.01114 1.00182 0.96470 1.23131 0.95115 0.97337 1.01785 1.23174 0.98907 0.95347 1.00361 1.20333 0.83167 0.88636 0.93166 0.99610 1.21578 1.18463 1.06463 1.12567 0.91990 1.25958 0.95252 1.00931 0.95875 1.70198 1.20431 1.37455 1.25916 0.85496 0.78052 0.78936 0.79047 1.18568 1.20722 1.20081 1.88734 1.33218 1.13780 1.94658 0.92189 0.91401 0.94399 0.92773 0.92116 0.92302 0.91854 0.95433 0.91327 0.89101 0.94445 0.89539 0.93955 0.93090 0.90925 0.88552 0.90938 0.91904 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.19 71.98 0.66 -2.91 16 2 C -0.10 -2.67 2.92 -10.80 -0.03 -2.70 16 3 C -0.14 -2.92 8.95 71.98 0.64 -2.27 16 4 C -0.10 -3.47 4.09 30.60 0.13 -3.34 16 5 C -0.11 -3.67 4.15 30.60 0.13 -3.54 16 6 C 0.08 3.00 0.94 -10.32 -0.01 2.99 16 7 C -0.14 -4.76 8.22 71.98 0.59 -4.17 16 8 C -0.14 -4.71 6.09 31.85 0.19 -4.52 16 9 C -0.14 -5.89 6.53 32.05 0.21 -5.68 16 10 C 0.20 11.01 3.22 30.52 0.10 11.11 16 11 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 12 C -0.55 -32.43 8.79 25.60 0.23 -32.21 16 13 H 0.06 3.50 7.76 -2.91 -0.02 3.48 16 14 C 0.02 1.27 5.43 84.65 0.46 1.73 16 15 N -0.90 -56.36 13.05 21.45 0.28 -56.08 16 16 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 O -0.38 -20.51 9.67 -148.98 -1.44 -21.95 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.19 6.56 -2.39 -0.02 1.17 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.03 1.17 7.89 -2.39 -0.02 1.15 16 29 H 0.07 2.12 6.36 -2.39 -0.02 2.11 16 30 H 0.09 2.45 6.56 -2.39 -0.02 2.43 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.78 6.36 -2.38 -0.02 1.76 16 35 H 0.07 2.35 7.85 -2.39 -0.02 2.34 16 36 H 0.10 2.68 7.82 -2.39 -0.02 2.66 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 39 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -67.79 305.18 5.14 -62.65 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.98 Total: 13.50 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 3.29 Total: -45.52 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.28 Total: -56.08 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.44 Total: -21.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.79 5.14 -62.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379601363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.072 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds