Wall clock time and date at job start Mon Mar 30 2020 02:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 119.99762 * 2 1 4 4 N 1.34773 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99743 * 180.02562 * 4 2 1 6 6 C 1.53520 * 114.16820 * 154.99972 * 5 4 2 7 7 N 1.47476 * 87.93077 * 87.62122 * 6 5 4 8 8 C 1.46907 * 110.99984 * 138.70220 * 7 6 5 9 9 C 1.52996 * 109.47007 * 169.99752 * 8 7 6 10 10 C 1.52998 * 109.46929 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46683 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47426 * 119.99743 * 15 13 11 18 18 H 1.48501 * 109.46833 * 239.99986 * 15 13 11 19 19 C 1.47475 * 87.83966 * 27.00794 * 7 6 5 20 20 H 1.09006 * 109.47568 * 270.00445 * 1 2 3 21 21 H 1.08995 * 109.47486 * 30.00376 * 1 2 3 22 22 H 1.09004 * 109.47198 * 150.00231 * 1 2 3 23 23 H 0.96996 * 120.00344 * 359.97438 * 4 2 1 24 24 H 1.08999 * 113.25969 * 22.04891 * 5 4 2 25 25 H 1.08999 * 113.47725 * 332.84854 * 6 5 4 26 26 H 1.08997 * 113.47302 * 202.38778 * 6 5 4 27 27 H 1.09000 * 109.46801 * 49.99628 * 8 7 6 28 28 H 1.08994 * 109.47121 * 289.99820 * 8 7 6 29 29 H 1.09000 * 109.47441 * 60.00268 * 9 8 7 30 30 H 1.09002 * 109.47087 * 299.99714 * 9 8 7 31 31 H 1.09001 * 109.47671 * 60.00109 * 10 9 8 32 32 H 1.08998 * 109.47454 * 300.00107 * 10 9 8 33 33 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 34 34 H 1.09003 * 113.47338 * 87.75443 * 19 7 6 35 35 H 1.09004 * 113.47887 * 218.22142 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1671 0.0011 6 6 4.2742 -2.4364 0.5936 7 7 4.1971 -3.0377 -0.7508 8 6 5.4148 -3.8002 -1.0571 9 6 5.2019 -4.6080 -2.3389 10 6 6.4699 -5.4027 -2.6574 11 6 6.2599 -6.1989 -3.9197 12 1 5.3163 -6.1439 -4.4420 13 6 7.2742 -6.9935 -4.4103 14 7 8.4252 -7.0562 -3.7770 15 14 7.0143 -7.9798 -5.9752 16 1 5.6433 -7.7367 -6.4914 17 1 8.0091 -7.5614 -6.9951 18 1 7.1834 -9.4259 -5.6827 19 6 4.2748 -1.6730 -1.3046 20 1 -0.3634 0.0001 1.0277 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6959 -2.0072 0.0013 24 1 4.0761 -0.2388 0.3770 25 1 3.6401 -2.9325 1.3283 26 1 5.2952 -2.2913 0.9465 27 1 5.6358 -4.4783 -0.2327 28 1 6.2490 -3.1125 -1.1954 29 1 4.9809 -3.9300 -3.1632 30 1 4.3676 -5.2958 -2.2005 31 1 6.6905 -6.0809 -1.8331 32 1 7.3044 -4.7153 -2.7956 33 1 9.1390 -7.6150 -4.1224 34 1 5.2961 -1.3243 -1.4583 35 1 3.6413 -1.5224 -2.1788 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388562319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:29 Heat of formation + Delta-G solvation = -43.132474 kcal Electronic energy + Delta-G solvation = -15149.690829 eV Core-core repulsion = 12568.136825 eV Total energy + Delta-G solvation = -2581.554004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62114 -39.88860 -36.28966 -34.97041 -33.63915 -31.02314 -29.49101 -27.08061 -26.78608 -24.07747 -22.01594 -21.79304 -20.77443 -18.55691 -17.94512 -17.25447 -16.77426 -16.50850 -16.25165 -15.99937 -15.39012 -14.86120 -14.40260 -14.29788 -13.79116 -13.61532 -13.30838 -13.07555 -12.96697 -12.67184 -12.58507 -12.46370 -12.17385 -11.88468 -11.43089 -11.34213 -11.09186 -10.94333 -10.57116 -10.11314 -9.86936 -8.21649 -6.32662 1.39334 1.39433 1.53196 1.61474 2.21091 2.40072 3.05335 3.11473 3.42283 3.80632 3.94516 4.03381 4.23329 4.39630 4.49314 4.55232 4.61402 4.68900 4.70801 4.76308 4.78282 4.86251 5.07532 5.14814 5.20925 5.36732 5.50678 5.52642 5.74644 5.84607 5.99461 6.25753 6.60209 6.84232 7.26405 7.36738 8.90416 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.055610 B = 0.004072 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.386701 B = 6874.192225 C = 7149.336349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.507 3.493 3 O -0.602 6.602 4 N -0.695 5.695 5 C 0.120 3.880 6 C -0.003 4.003 7 N -0.478 5.478 8 C 0.031 3.969 9 C -0.084 4.084 10 C 0.024 3.976 11 C -0.543 4.543 12 H 0.057 0.943 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.276 1.276 19 C -0.017 4.017 20 H 0.113 0.887 21 H 0.092 0.908 22 H 0.104 0.896 23 H 0.419 0.581 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.050 0.950 31 H -0.006 1.006 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 10.729 9.471 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.484 6.484 4 N -0.346 5.346 5 C 0.013 3.987 6 C -0.132 4.132 7 N -0.200 5.200 8 C -0.098 4.098 9 C -0.122 4.122 10 C -0.013 4.013 11 C -0.581 4.581 12 H 0.075 0.925 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.147 4.147 20 H 0.132 0.868 21 H 0.111 0.889 22 H 0.123 0.877 23 H 0.256 0.744 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.495 10.901 9.281 20.373 hybrid contribution 1.117 -0.609 -0.726 1.465 sum -13.377 10.291 8.554 18.922 Atomic orbital electron populations 1.21896 0.87910 1.06126 1.06361 1.21664 0.92367 0.82608 0.73731 1.90698 1.72169 1.33192 1.52294 1.45648 1.05595 1.09557 1.73823 1.21865 0.81864 0.98955 0.96013 1.24237 1.01883 0.93417 0.93674 1.68913 1.34456 1.10752 1.05881 1.22611 0.91278 0.97444 0.98422 1.21247 0.97948 0.97379 0.95601 1.18997 0.93233 0.93995 0.95106 1.21722 0.99609 1.26671 1.10123 0.92465 1.25990 0.94815 0.98077 1.01012 1.70098 1.04905 1.40855 1.41525 0.85386 0.78572 0.78226 0.78802 1.18692 1.20312 1.20168 1.24427 1.01204 0.89901 0.99217 0.86843 0.88906 0.87737 0.74387 0.87913 0.87761 0.89242 0.91087 0.93986 0.94029 0.93078 0.98811 0.99148 0.92730 0.90301 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.30 71.23 0.73 -0.95 16 2 C 0.51 10.20 7.94 87.66 0.70 10.90 16 3 O -0.60 -18.10 16.69 -3.03 -0.05 -18.15 16 4 N -0.69 -12.57 5.39 -441.69 -2.38 -14.95 16 5 C 0.12 2.55 4.60 45.45 0.21 2.76 16 6 C 0.00 -0.06 7.45 83.58 0.62 0.57 16 7 N -0.48 -12.88 6.33 -927.93 -5.88 -18.76 16 8 C 0.03 1.03 4.82 86.30 0.42 1.45 16 9 C -0.08 -3.53 5.48 30.59 0.17 -3.37 16 10 C 0.02 1.30 4.97 29.85 0.15 1.45 16 11 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 13 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 14 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.02 -0.43 7.52 83.58 0.63 0.20 16 20 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 21 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 23 H 0.42 5.81 8.76 -92.71 -0.81 5.00 16 24 H 0.10 2.35 7.45 -2.39 -0.02 2.34 16 25 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 1.70 7.91 -2.39 -0.02 1.68 16 27 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 28 H 0.04 1.40 7.30 -2.39 -0.02 1.38 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.08 2.00 7.42 -2.39 -0.02 1.98 16 35 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -71.76 296.45 -1.43 -73.19 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.25 Total: 6.90 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.32 Total: -17.98 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -7.97 Total: -90.72 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.15 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.76 -1.43 -73.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388562319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.058 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds