Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46965 * 2 1 4 4 C 1.53003 * 109.46696 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46800 * 174.62021 * 4 3 2 6 6 C 1.53005 * 109.86894 * 180.93829 * 5 4 3 7 7 C 1.52999 * 109.47211 * 62.33965 * 6 5 4 8 8 C 1.54101 * 110.00377 * 59.84911 * 5 4 3 9 9 C 1.54808 * 104.18850 * 238.47281 * 8 5 4 10 10 C 1.55002 * 102.09370 * 339.12490 * 9 8 5 11 11 H 1.09004 * 110.75005 * 278.45618 * 10 9 8 12 12 C 1.50700 * 110.61985 * 155.52530 * 10 9 8 13 13 H 1.07995 * 120.00276 * 4.47010 * 12 10 9 14 14 C 1.37878 * 119.99546 * 184.47578 * 12 10 9 15 15 N 1.31515 * 120.00377 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99623 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47457 * 89.99604 * 16 14 12 18 18 H 1.48505 * 109.46944 * 209.99882 * 16 14 12 19 19 H 1.48503 * 109.46964 * 329.99506 * 16 14 12 20 20 O 1.43751 * 109.87878 * 301.94111 * 5 4 3 21 21 H 1.09005 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47495 * 299.99736 * 1 2 3 23 23 H 1.08999 * 109.47171 * 60.00445 * 1 2 3 24 24 H 1.08999 * 109.46903 * 239.99560 * 2 1 3 25 25 H 1.09003 * 109.46578 * 120.00257 * 2 1 3 26 26 H 1.09001 * 109.47262 * 60.00362 * 3 2 1 27 27 H 1.08994 * 109.47485 * 299.99635 * 3 2 1 28 28 H 1.08997 * 109.47281 * 54.62204 * 4 3 2 29 29 H 1.08999 * 109.47406 * 294.61309 * 4 3 2 30 30 H 1.09000 * 109.47024 * 182.33993 * 6 5 4 31 31 H 1.09004 * 109.46947 * 302.33868 * 6 5 4 32 32 H 1.08992 * 109.47143 * 63.23284 * 7 6 5 33 33 H 1.09002 * 109.47026 * 183.23176 * 7 6 5 34 34 H 1.09000 * 109.46843 * 303.23299 * 7 6 5 35 35 H 1.09000 * 110.49128 * 357.15321 * 8 5 4 36 36 H 1.09001 * 110.48906 * 119.80305 * 8 5 4 37 37 H 1.08993 * 110.91201 * 220.92238 * 9 8 5 38 38 H 1.08998 * 110.90533 * 97.31900 * 9 8 5 39 39 H 0.96998 * 119.99821 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8785 -0.1346 6 6 5.6099 2.8870 -0.1584 7 6 6.1052 2.1098 -1.3797 8 6 3.5695 3.7323 1.0423 9 6 2.7742 4.8749 0.3653 10 6 3.3563 4.8689 -1.0712 11 1 4.2993 5.4145 -1.1081 12 6 2.3680 5.4543 -2.0468 13 1 1.4379 5.8704 -1.6890 14 6 2.6514 5.4584 -3.3961 15 7 3.7842 4.9520 -3.8318 16 14 1.4260 6.1833 -4.6055 17 1 1.7120 7.6282 -4.7939 18 1 1.5427 5.4815 -5.9090 19 1 0.0491 6.0163 -4.0750 20 8 3.5692 3.4670 -1.3426 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.9337 0.8473 -0.8370 29 1 3.9330 1.0145 0.9351 30 1 5.9667 3.9155 -0.2130 31 1 5.9900 2.4182 0.7493 32 1 5.7731 2.6111 -2.2886 33 1 7.1943 2.0668 -1.3657 34 1 5.7013 1.0977 -1.3546 35 1 2.9170 3.1429 1.6865 36 1 4.4065 4.1358 1.6122 37 1 2.9659 5.8277 0.8587 38 1 1.7073 4.6523 0.3535 39 1 3.9836 4.9552 -4.7811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389207725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = -81.928300 kcal Electronic energy + Delta-G solvation = -16937.132818 eV Core-core repulsion = 14457.436845 eV Total energy + Delta-G solvation = -2479.695973 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.95863 -35.01547 -33.27448 -31.94206 -30.84242 -29.69580 -27.25865 -24.88253 -22.96042 -22.25090 -20.59967 -19.98415 -18.56429 -16.52186 -15.36535 -14.87405 -14.67468 -14.32711 -13.75437 -13.32274 -13.01381 -12.95097 -12.59641 -12.29077 -11.85607 -11.73907 -11.53153 -11.05469 -10.95756 -10.84220 -10.65342 -10.63938 -10.50977 -10.28810 -10.09801 -10.02814 -10.01127 -9.48582 -9.37141 -8.97326 -8.53607 -7.86685 -5.96662 -4.08257 3.32578 3.39520 3.42758 4.45509 5.03315 5.18104 5.32123 5.41403 5.46571 5.58117 5.64753 5.78189 5.82481 5.93383 6.02707 6.07797 6.09571 6.17282 6.21500 6.27864 6.39117 6.42067 6.47704 6.48165 6.57582 6.69564 6.75209 6.79185 6.90474 6.96600 7.08002 7.09350 7.18336 7.61184 7.93717 8.31829 8.68860 9.05849 9.61564 11.10868 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.009956 C = 0.008240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.007129 B = 2811.753493 C = 3397.196169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.104 4.104 5 C 0.095 3.905 6 C -0.127 4.127 7 C -0.144 4.144 8 C -0.148 4.148 9 C -0.147 4.147 10 C 0.212 3.788 11 H 0.021 0.979 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.078 3.922 15 N -0.861 5.861 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 O -0.335 6.335 21 H 0.046 0.954 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 -6.821 7.835 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.142 4.142 5 C 0.054 3.946 6 C -0.165 4.165 7 C -0.201 4.201 8 C -0.185 4.185 9 C -0.185 4.185 10 C 0.156 3.844 11 H 0.039 0.961 12 C -0.567 4.567 13 H 0.080 0.920 14 C -0.127 4.127 15 N -0.497 5.497 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 O -0.254 6.254 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.346 -6.971 7.474 10.226 hybrid contribution -0.491 0.484 -0.438 0.817 sum -0.837 -6.487 7.036 9.607 Atomic orbital electron populations 1.21765 0.96424 1.00720 1.01920 1.21541 0.95451 0.97949 1.01094 1.21576 0.95430 0.95359 1.03081 1.21637 0.95765 0.96165 1.00600 1.21897 0.91899 0.92989 0.87800 1.21904 0.96602 1.00434 0.97528 1.21680 0.98532 0.99835 1.00099 1.23019 0.99467 0.98007 0.98057 1.23189 0.99799 0.96269 0.99205 1.20572 0.94501 0.80256 0.89057 0.96091 1.20987 1.04794 1.39354 0.91551 0.92006 1.25041 0.95014 0.94213 0.98453 1.70034 1.22512 1.42863 1.14335 0.86674 0.81939 0.79041 0.80755 1.20651 1.21157 1.19811 1.89258 1.83538 1.23740 1.28911 0.93498 0.93079 0.92527 0.92388 0.92972 0.92700 0.90108 0.91713 0.92809 0.92280 0.93302 0.90592 0.94498 0.93505 0.91991 0.92495 0.92749 0.91915 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.88 16 3 C -0.12 -1.98 4.78 -26.73 -0.13 -2.11 16 4 C -0.10 -1.79 4.16 -26.73 -0.11 -1.91 16 5 C 0.10 1.88 0.54 -90.04 -0.05 1.83 16 6 C -0.13 -2.34 4.93 -26.73 -0.13 -2.47 16 7 C -0.14 -2.65 9.50 37.16 0.35 -2.30 16 8 C -0.15 -2.71 5.83 -25.20 -0.15 -2.86 16 9 C -0.15 -3.11 6.55 -24.72 -0.16 -3.27 16 10 C 0.21 5.45 3.11 -26.83 -0.08 5.37 16 11 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 12 C -0.53 -14.89 8.83 -34.44 -0.30 -15.20 16 13 H 0.06 1.70 7.78 -52.49 -0.41 1.29 16 14 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 15 N -0.86 -25.41 12.95 55.43 0.72 -24.70 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 O -0.34 -8.42 8.64 -35.23 -0.30 -8.72 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.90 6.58 -51.93 -0.34 0.56 16 27 H 0.08 1.65 7.49 -51.93 -0.39 1.26 16 28 H 0.06 1.15 6.41 -51.93 -0.33 0.82 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.67 7.77 -51.93 -0.40 1.27 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.79 6.34 -51.93 -0.33 0.47 16 35 H 0.06 1.03 6.26 -51.93 -0.32 0.70 16 36 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -29.13 304.17 -7.81 -36.94 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.13 Total: -0.36 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.65 Total: -24.24 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.72 Total: -24.70 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.30 Total: -8.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.13 -7.81 -36.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389207725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.990 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds