Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46965 * 2 1 4 4 C 1.53003 * 109.46696 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46800 * 174.62021 * 4 3 2 6 6 C 1.53005 * 109.86894 * 180.93829 * 5 4 3 7 7 C 1.52999 * 109.47211 * 62.33965 * 6 5 4 8 8 C 1.54101 * 110.00377 * 59.84911 * 5 4 3 9 9 C 1.54808 * 104.18850 * 238.47281 * 8 5 4 10 10 C 1.55002 * 102.09370 * 339.12490 * 9 8 5 11 11 H 1.09004 * 110.75005 * 278.45618 * 10 9 8 12 12 C 1.50700 * 110.61985 * 155.52530 * 10 9 8 13 13 H 1.07995 * 120.00276 * 4.47010 * 12 10 9 14 14 C 1.37878 * 119.99546 * 184.47578 * 12 10 9 15 15 N 1.31515 * 120.00377 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99623 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47457 * 89.99604 * 16 14 12 18 18 H 1.48505 * 109.46944 * 209.99882 * 16 14 12 19 19 H 1.48503 * 109.46964 * 329.99506 * 16 14 12 20 20 O 1.43751 * 109.87878 * 301.94111 * 5 4 3 21 21 H 1.09005 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47495 * 299.99736 * 1 2 3 23 23 H 1.08999 * 109.47171 * 60.00445 * 1 2 3 24 24 H 1.08999 * 109.46903 * 239.99560 * 2 1 3 25 25 H 1.09003 * 109.46578 * 120.00257 * 2 1 3 26 26 H 1.09001 * 109.47262 * 60.00362 * 3 2 1 27 27 H 1.08994 * 109.47485 * 299.99635 * 3 2 1 28 28 H 1.08997 * 109.47281 * 54.62204 * 4 3 2 29 29 H 1.08999 * 109.47406 * 294.61309 * 4 3 2 30 30 H 1.09000 * 109.47024 * 182.33993 * 6 5 4 31 31 H 1.09004 * 109.46947 * 302.33868 * 6 5 4 32 32 H 1.08992 * 109.47143 * 63.23284 * 7 6 5 33 33 H 1.09002 * 109.47026 * 183.23176 * 7 6 5 34 34 H 1.09000 * 109.46843 * 303.23299 * 7 6 5 35 35 H 1.09000 * 110.49128 * 357.15321 * 8 5 4 36 36 H 1.09001 * 110.48906 * 119.80305 * 8 5 4 37 37 H 1.08993 * 110.91201 * 220.92238 * 9 8 5 38 38 H 1.08998 * 110.90533 * 97.31900 * 9 8 5 39 39 H 0.96998 * 119.99821 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8785 -0.1346 6 6 5.6099 2.8870 -0.1584 7 6 6.1052 2.1098 -1.3797 8 6 3.5695 3.7323 1.0423 9 6 2.7742 4.8749 0.3653 10 6 3.3563 4.8689 -1.0712 11 1 4.2993 5.4145 -1.1081 12 6 2.3680 5.4543 -2.0468 13 1 1.4379 5.8704 -1.6890 14 6 2.6514 5.4584 -3.3961 15 7 3.7842 4.9520 -3.8318 16 14 1.4260 6.1833 -4.6055 17 1 1.7120 7.6282 -4.7939 18 1 1.5427 5.4815 -5.9090 19 1 0.0491 6.0163 -4.0750 20 8 3.5692 3.4670 -1.3426 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.9337 0.8473 -0.8370 29 1 3.9330 1.0145 0.9351 30 1 5.9667 3.9155 -0.2130 31 1 5.9900 2.4182 0.7493 32 1 5.7731 2.6111 -2.2886 33 1 7.1943 2.0668 -1.3657 34 1 5.7013 1.0977 -1.3546 35 1 2.9170 3.1429 1.6865 36 1 4.4065 4.1358 1.6122 37 1 2.9659 5.8277 0.8587 38 1 1.7073 4.6523 0.3535 39 1 3.9836 4.9552 -4.7811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389207725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = -97.720611 kcal Electronic energy + Delta-G solvation = -16937.817624 eV Core-core repulsion = 14457.436845 eV Total energy + Delta-G solvation = -2480.380779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60880 -36.42573 -34.98665 -33.84066 -32.54270 -31.09279 -29.02444 -26.60702 -24.32095 -23.97763 -21.91709 -21.68320 -20.13722 -18.62437 -16.97053 -16.63711 -16.20051 -15.94547 -15.40671 -14.84938 -14.47570 -14.34750 -14.14443 -13.77609 -13.62715 -13.26469 -13.05025 -12.83194 -12.55845 -12.40288 -12.23352 -12.08362 -11.97386 -11.85375 -11.71661 -11.69663 -11.38266 -11.01574 -10.95162 -10.88025 -10.65242 -9.73495 -8.12518 -6.31715 1.38838 1.40376 1.50712 2.40960 3.09946 3.64612 3.85416 4.01218 4.18082 4.19018 4.24667 4.38228 4.43644 4.51954 4.58535 4.63242 4.77764 4.85033 4.87768 4.93358 4.99161 5.05603 5.07594 5.08763 5.19221 5.21939 5.25286 5.31238 5.44157 5.51867 5.53348 5.62414 5.66530 5.71561 5.79259 6.23348 6.65646 7.09601 7.42847 8.95048 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.009956 C = 0.008240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.007129 B = 2811.753493 C = 3397.196169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.112 4.112 4 C -0.099 4.099 5 C 0.079 3.921 6 C -0.126 4.126 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.140 4.140 10 C 0.207 3.793 11 H -0.016 1.016 12 C -0.552 4.552 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.897 5.897 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.267 1.267 20 O -0.366 6.366 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -8.041 9.640 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.149 4.149 4 C -0.137 4.137 5 C 0.039 3.961 6 C -0.163 4.163 7 C -0.195 4.195 8 C -0.175 4.175 9 C -0.178 4.178 10 C 0.151 3.849 11 H 0.002 0.998 12 C -0.589 4.589 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.191 1.191 20 O -0.286 6.286 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.841 -8.188 9.292 12.414 hybrid contribution -0.296 0.845 -0.968 1.318 sum -1.137 -7.343 8.324 11.158 Atomic orbital electron populations 1.21763 0.95678 1.01930 1.01425 1.21506 0.96137 0.95925 1.02010 1.21487 0.95321 0.96990 1.01135 1.21642 0.95852 0.94231 1.01938 1.22302 0.92797 0.94495 0.86506 1.21915 0.95787 0.99551 0.99080 1.21594 1.00049 0.99918 0.97922 1.22989 1.00025 0.96804 0.97645 1.23053 0.99657 0.98312 0.96739 1.20375 0.92561 0.80573 0.91422 0.99820 1.21404 1.05163 1.39719 0.92654 0.92085 1.25882 0.96812 0.94623 1.00377 1.70181 1.24376 1.44281 1.14551 0.85613 0.79639 0.78556 0.78134 1.19552 1.20948 1.19093 1.89182 1.84219 1.23063 1.32106 0.91440 0.92368 0.94281 0.92931 0.90499 0.91958 0.94691 0.92697 0.89249 0.94466 0.89435 0.95480 0.92185 0.92075 0.89418 0.90648 0.91561 0.92360 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.05 5.93 30.59 0.18 -2.87 16 3 C -0.11 -3.63 4.78 30.59 0.15 -3.48 16 4 C -0.10 -3.21 4.16 30.60 0.13 -3.08 16 5 C 0.08 3.06 0.54 -10.42 -0.01 3.06 16 6 C -0.13 -4.48 4.93 30.60 0.15 -4.33 16 7 C -0.14 -5.01 9.50 71.98 0.68 -4.33 16 8 C -0.14 -4.74 5.83 31.58 0.18 -4.55 16 9 C -0.14 -5.88 6.55 31.90 0.21 -5.67 16 10 C 0.21 11.02 3.11 30.53 0.10 11.12 16 11 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 12 C -0.55 -32.06 8.83 25.60 0.23 -31.84 16 13 H 0.06 3.43 7.78 -2.91 -0.02 3.41 16 14 C 0.03 1.47 5.42 84.65 0.46 1.93 16 15 N -0.90 -55.09 12.95 21.45 0.28 -54.81 16 16 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 O -0.37 -18.98 8.64 -148.98 -1.29 -20.27 16 21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.90 6.58 -2.39 -0.02 1.88 16 27 H 0.03 1.44 7.49 -2.39 -0.02 1.43 16 28 H 0.05 1.87 6.41 -2.39 -0.02 1.86 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.03 1.22 7.77 -2.39 -0.02 1.20 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 2.01 6.34 -2.39 -0.02 2.00 16 35 H 0.09 2.58 6.26 -2.39 -0.01 2.57 16 36 H 0.07 2.33 7.70 -2.39 -0.02 2.31 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.06 2.47 8.05 -2.39 -0.02 2.45 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -65.88 304.17 5.17 -60.71 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.98 Total: 14.13 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 3.17 Total: -46.93 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.29 Total: -20.27 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.88 5.17 -60.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389207725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.008 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds