Wall clock time and date at job start Mon Mar 30 2020 03:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46879 * 2 1 4 4 C 1.52999 * 109.47220 * 120.00408 * 2 1 3 5 5 C 1.52997 * 109.46969 * 174.99690 * 4 2 1 6 6 C 1.52999 * 109.46969 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.48327 * 54.97812 * 6 5 4 8 8 C 1.53096 * 109.47997 * 175.00553 * 6 5 4 9 9 C 1.53177 * 109.16337 * 177.59386 * 8 6 5 10 10 C 1.53178 * 109.03306 * 303.01263 * 9 8 6 11 11 C 1.53096 * 109.16485 * 56.98422 * 10 9 8 12 12 H 1.09002 * 109.47842 * 62.37930 * 11 10 9 13 13 C 1.50695 * 109.48109 * 182.40583 * 11 10 9 14 14 H 1.07995 * 120.00496 * 359.97438 * 13 11 10 15 15 C 1.37880 * 119.99572 * 179.97438 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 O 1.42898 * 109.48047 * 294.95427 * 6 5 4 22 22 H 1.08992 * 109.47006 * 299.99302 * 1 2 3 23 23 H 1.08996 * 109.46931 * 59.99670 * 1 2 3 24 24 H 1.08998 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46618 * 240.00450 * 2 1 3 26 26 H 1.08997 * 109.46667 * 60.01012 * 3 2 1 27 27 H 1.09004 * 109.46913 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47608 * 299.99915 * 3 2 1 29 29 H 1.09002 * 109.47032 * 55.00069 * 4 2 1 30 30 H 1.08999 * 109.47145 * 294.99840 * 4 2 1 31 31 H 1.09002 * 109.46934 * 60.00320 * 5 4 2 32 32 H 1.08999 * 109.47310 * 300.00049 * 5 4 2 33 33 H 1.08992 * 109.52364 * 57.68226 * 8 6 5 34 34 H 1.09001 * 109.57139 * 297.52750 * 8 6 5 35 35 H 1.08999 * 109.54397 * 183.15299 * 9 8 6 36 36 H 1.08998 * 109.54474 * 62.88173 * 9 8 6 37 37 H 1.09000 * 109.52618 * 297.07661 * 10 9 8 38 38 H 1.09008 * 109.57536 * 176.91627 * 10 9 8 39 39 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1878 6 6 4.0748 -1.5530 2.4367 7 1 3.5730 -2.5160 2.5303 8 6 5.5851 -1.7738 2.3178 9 6 6.0978 -2.4425 3.5970 10 6 5.7311 -1.5674 4.7996 11 6 4.2152 -1.3546 4.8227 12 1 3.7152 -2.3150 4.9479 13 6 3.8527 -0.4460 5.9689 14 1 4.6254 -0.0591 6.6167 15 6 2.5343 -0.1085 6.1907 16 7 1.5932 -0.5800 5.4023 17 14 2.0849 1.0183 7.6112 18 1 2.7662 2.3267 7.4398 19 1 2.5168 0.3992 8.8900 20 1 0.6146 1.2255 7.6327 21 8 3.8003 -0.7582 3.5920 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9562 0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6055 -1.7199 1.2950 30 1 1.7517 -0.1585 2.1369 31 1 3.9995 0.1674 1.1420 32 1 3.8532 -1.3940 0.3000 33 1 6.0840 -0.8141 2.1833 34 1 5.7941 -2.4160 1.4622 35 1 7.1809 -2.5518 3.5425 36 1 5.6359 -3.4238 3.7058 37 1 6.2330 -0.6035 4.7153 38 1 6.0435 -2.0616 5.7196 39 1 1.8266 -1.1648 4.6644 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394114786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:17 Heat of formation + Delta-G solvation = -96.972357 kcal Electronic energy + Delta-G solvation = -16695.222286 eV Core-core repulsion = 14214.873954 eV Total energy + Delta-G solvation = -2480.348333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.53769 -36.35262 -33.27793 -32.56932 -31.32399 -28.47150 -26.89713 -25.40570 -23.70294 -21.99689 -20.72006 -19.67182 -19.24288 -17.04144 -15.54700 -14.71523 -14.56891 -14.01286 -13.77990 -13.71558 -13.48742 -13.22720 -12.98563 -12.26346 -11.90052 -11.82709 -11.54618 -11.31036 -11.19013 -10.90416 -10.74780 -10.53708 -10.35302 -10.33808 -10.21418 -10.07813 -10.02584 -9.88214 -9.39020 -8.56884 -8.29684 -8.04132 -6.30245 -4.08396 3.46188 3.49027 3.67081 4.55545 4.91894 5.04696 5.23007 5.25515 5.45821 5.52070 5.54273 5.65056 5.82891 5.85658 5.87341 5.94658 6.02229 6.05816 6.11787 6.18810 6.23234 6.27451 6.36954 6.42805 6.45937 6.54606 6.59808 6.67001 6.75029 6.81110 6.82658 6.89254 7.06275 7.35499 8.16584 8.43237 8.83766 8.96276 9.74012 11.10253 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.010197 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.229950 B = 2745.143361 C = 3945.479371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.105 4.105 6 C 0.082 3.918 7 H 0.037 0.963 8 C -0.144 4.144 9 C -0.122 4.122 10 C -0.136 4.136 11 C 0.203 3.797 12 H 0.002 0.998 13 C -0.602 4.602 14 H 0.055 0.945 15 C 0.033 3.967 16 N -0.888 5.888 17 Si 1.067 2.933 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.282 1.282 21 O -0.366 6.366 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -0.820 -9.273 9.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.143 4.143 6 C 0.023 3.977 7 H 0.055 0.945 8 C -0.182 4.182 9 C -0.159 4.159 10 C -0.174 4.174 11 C 0.148 3.852 12 H 0.020 0.980 13 C -0.639 4.639 14 H 0.073 0.927 15 C -0.176 4.176 16 N -0.523 5.523 17 Si 0.895 3.105 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.207 1.207 21 O -0.286 6.286 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.091 0.084 -8.531 8.601 hybrid contribution 1.620 -1.067 -0.811 2.103 sum 2.711 -0.983 -9.342 9.777 Atomic orbital electron populations 1.21827 0.95675 1.01404 1.01428 1.21115 0.95409 0.96391 0.98435 1.21869 1.01117 0.96160 1.01249 1.21586 0.94899 1.00309 0.98144 1.21577 0.96252 1.00797 0.95635 1.21873 0.92428 0.94482 0.88953 0.94486 1.22160 0.98242 1.00547 0.97227 1.21629 0.99352 0.98960 0.95989 1.22118 1.00517 0.98700 0.96048 1.19852 0.88351 0.94202 0.82780 0.98001 1.21868 0.95274 1.35507 1.11227 0.92715 1.25815 0.92751 0.97834 1.01174 1.70648 1.35538 1.29484 1.16619 0.83596 0.76197 0.75856 0.74840 1.21400 1.21463 1.20732 1.88354 1.81724 1.45134 1.13376 0.92344 0.93413 0.93020 0.92172 0.92361 0.92605 0.93616 0.92809 0.89937 0.91556 0.92441 0.91891 0.92706 0.93122 0.92852 0.92468 0.92570 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.19 37.16 0.34 -1.64 16 2 C -0.10 -1.38 2.92 -90.62 -0.26 -1.64 16 3 C -0.15 -2.07 8.95 37.16 0.33 -1.74 16 4 C -0.11 -1.97 4.58 -26.73 -0.12 -2.09 16 5 C -0.11 -1.82 4.68 -26.73 -0.13 -1.95 16 6 C 0.08 1.65 2.64 -26.68 -0.07 1.58 16 7 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.14 -2.55 5.42 -26.59 -0.14 -2.70 16 9 C -0.12 -2.22 6.03 -26.55 -0.16 -2.38 16 10 C -0.14 -2.99 5.36 -26.59 -0.14 -3.13 16 11 C 0.20 5.33 2.10 -27.84 -0.06 5.27 16 12 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 13 C -0.60 -17.41 8.79 -34.44 -0.30 -17.72 16 14 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.03 0.96 5.40 -17.82 -0.10 0.86 16 16 N -0.89 -27.03 13.53 55.43 0.75 -26.28 16 17 Si 1.07 25.45 29.90 -169.99 -5.08 20.36 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 O -0.37 -9.31 8.26 -35.23 -0.29 -9.60 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.78 7.82 -51.93 -0.41 1.37 16 31 H 0.07 1.17 6.57 -51.93 -0.34 0.83 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.28 8.56 6.47 -40.82 -0.26 8.30 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -30.20 304.38 -8.16 -38.37 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.31 Total: -0.16 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -0.81 Total: -27.28 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.75 Total: -26.28 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.29 Total: -9.60 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.20 -8.16 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394114786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.606 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds