Wall clock time and date at job start Mon Mar 30 2020 03:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46879 * 2 1 4 4 C 1.52999 * 109.47220 * 120.00408 * 2 1 3 5 5 C 1.52997 * 109.46969 * 174.99690 * 4 2 1 6 6 C 1.52999 * 109.46969 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.48327 * 54.97812 * 6 5 4 8 8 C 1.53096 * 109.47997 * 175.00553 * 6 5 4 9 9 C 1.53177 * 109.16337 * 177.59386 * 8 6 5 10 10 C 1.53178 * 109.03306 * 303.01263 * 9 8 6 11 11 C 1.53096 * 109.16485 * 56.98422 * 10 9 8 12 12 H 1.09002 * 109.47842 * 62.37930 * 11 10 9 13 13 C 1.50695 * 109.48109 * 182.40583 * 11 10 9 14 14 H 1.07995 * 120.00496 * 359.97438 * 13 11 10 15 15 C 1.37880 * 119.99572 * 179.97438 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 O 1.42898 * 109.48047 * 294.95427 * 6 5 4 22 22 H 1.08992 * 109.47006 * 299.99302 * 1 2 3 23 23 H 1.08996 * 109.46931 * 59.99670 * 1 2 3 24 24 H 1.08998 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46618 * 240.00450 * 2 1 3 26 26 H 1.08997 * 109.46667 * 60.01012 * 3 2 1 27 27 H 1.09004 * 109.46913 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47608 * 299.99915 * 3 2 1 29 29 H 1.09002 * 109.47032 * 55.00069 * 4 2 1 30 30 H 1.08999 * 109.47145 * 294.99840 * 4 2 1 31 31 H 1.09002 * 109.46934 * 60.00320 * 5 4 2 32 32 H 1.08999 * 109.47310 * 300.00049 * 5 4 2 33 33 H 1.08992 * 109.52364 * 57.68226 * 8 6 5 34 34 H 1.09001 * 109.57139 * 297.52750 * 8 6 5 35 35 H 1.08999 * 109.54397 * 183.15299 * 9 8 6 36 36 H 1.08998 * 109.54474 * 62.88173 * 9 8 6 37 37 H 1.09000 * 109.52618 * 297.07661 * 10 9 8 38 38 H 1.09008 * 109.57536 * 176.91627 * 10 9 8 39 39 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1878 6 6 4.0748 -1.5530 2.4367 7 1 3.5730 -2.5160 2.5303 8 6 5.5851 -1.7738 2.3178 9 6 6.0978 -2.4425 3.5970 10 6 5.7311 -1.5674 4.7996 11 6 4.2152 -1.3546 4.8227 12 1 3.7152 -2.3150 4.9479 13 6 3.8527 -0.4460 5.9689 14 1 4.6254 -0.0591 6.6167 15 6 2.5343 -0.1085 6.1907 16 7 1.5932 -0.5800 5.4023 17 14 2.0849 1.0183 7.6112 18 1 2.7662 2.3267 7.4398 19 1 2.5168 0.3992 8.8900 20 1 0.6146 1.2255 7.6327 21 8 3.8003 -0.7582 3.5920 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9562 0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6055 -1.7199 1.2950 30 1 1.7517 -0.1585 2.1369 31 1 3.9995 0.1674 1.1420 32 1 3.8532 -1.3940 0.3000 33 1 6.0840 -0.8141 2.1833 34 1 5.7941 -2.4160 1.4622 35 1 7.1809 -2.5518 3.5425 36 1 5.6359 -3.4238 3.7058 37 1 6.2330 -0.6035 4.7153 38 1 6.0435 -2.0616 5.7196 39 1 1.8266 -1.1648 4.6644 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394114786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:17 Heat of formation + Delta-G solvation = -113.579370 kcal Electronic energy + Delta-G solvation = -16695.942420 eV Core-core repulsion = 14214.873954 eV Total energy + Delta-G solvation = -2481.068467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26751 -37.69673 -35.24129 -34.26497 -33.08581 -30.10718 -28.03055 -27.28647 -25.36107 -23.86043 -22.28667 -21.20401 -20.64277 -19.17673 -17.22405 -16.31500 -16.03666 -15.69039 -15.63941 -15.38729 -14.98461 -14.72160 -14.44344 -13.64337 -13.54589 -13.20561 -13.09199 -13.00890 -12.69400 -12.56204 -12.21998 -12.08874 -11.98170 -11.89002 -11.86142 -11.67485 -11.47853 -11.33102 -10.99843 -10.68625 -10.41288 -9.90953 -8.60949 -6.41184 1.51222 1.60184 1.79344 2.56108 3.02983 3.53689 3.69852 3.96349 4.02492 4.04495 4.09966 4.14365 4.30755 4.38233 4.51024 4.53336 4.69287 4.70720 4.78371 4.81083 4.88540 4.90384 4.98158 5.01543 5.07691 5.15022 5.16086 5.20871 5.23920 5.27088 5.37663 5.46717 5.52706 5.62634 6.01495 6.13900 6.59030 6.98274 7.52072 8.77997 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.010197 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.229950 B = 2745.143361 C = 3945.479371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.098 4.098 6 C 0.069 3.931 7 H 0.025 0.975 8 C -0.137 4.137 9 C -0.117 4.117 10 C -0.131 4.131 11 C 0.200 3.800 12 H -0.030 1.030 13 C -0.626 4.626 14 H 0.052 0.948 15 C -0.018 4.018 16 N -0.912 5.912 17 Si 1.115 2.885 18 H -0.273 1.273 19 H -0.266 1.266 20 H -0.282 1.282 21 O -0.394 6.394 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 -0.770 -10.888 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.135 4.135 6 C 0.010 3.990 7 H 0.043 0.957 8 C -0.175 4.175 9 C -0.155 4.155 10 C -0.169 4.169 11 C 0.145 3.855 12 H -0.013 1.013 13 C -0.663 4.663 14 H 0.071 0.929 15 C -0.221 4.221 16 N -0.548 5.548 17 Si 0.936 3.064 18 H -0.199 1.199 19 H -0.191 1.191 20 H -0.208 1.208 21 O -0.314 6.314 22 H 0.054 0.946 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.337 0.120 -10.157 10.423 hybrid contribution 1.249 -1.133 -0.352 1.722 sum 3.586 -1.013 -10.508 11.150 Atomic orbital electron populations 1.21826 0.95173 1.01729 1.01549 1.21108 0.95888 0.96384 0.97463 1.21856 1.01169 0.95941 1.01265 1.21503 0.95650 0.99587 0.97771 1.21582 0.95540 1.00854 0.95504 1.22240 0.94825 0.93738 0.88156 0.95719 1.22124 0.95570 1.01432 0.98377 1.21620 1.01546 0.98016 0.94291 1.21997 0.97131 0.99383 0.98365 1.19690 0.90920 0.91953 0.82965 1.01286 1.22301 0.95583 1.35672 1.12717 0.92935 1.27340 0.93055 0.98648 1.03028 1.70769 1.36043 1.30790 1.17179 0.82998 0.76025 0.74696 0.72702 1.19884 1.19124 1.20751 1.88244 1.82544 1.46178 1.14452 0.94591 0.90884 0.92659 0.89438 0.94896 0.92489 0.91008 0.93312 0.95172 0.91889 0.88529 0.91775 0.88831 0.89670 0.92668 0.93100 0.92372 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.19 71.98 0.66 -3.15 16 2 C -0.09 -2.48 2.92 -10.79 -0.03 -2.51 16 3 C -0.15 -3.92 8.95 71.98 0.64 -3.28 16 4 C -0.11 -3.84 4.58 30.59 0.14 -3.70 16 5 C -0.10 -3.26 4.68 30.59 0.14 -3.12 16 6 C 0.07 2.76 2.64 30.63 0.08 2.84 16 7 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 8 C -0.14 -4.52 5.42 30.69 0.17 -4.35 16 9 C -0.12 -4.03 6.03 30.71 0.19 -3.84 16 10 C -0.13 -5.74 5.36 30.69 0.16 -5.58 16 11 C 0.20 10.88 2.10 29.88 0.06 10.94 16 12 H -0.03 -1.79 8.01 -2.39 -0.02 -1.81 16 13 C -0.63 -37.35 8.79 25.60 0.23 -37.12 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 15 C -0.02 -1.10 5.40 84.66 0.46 -0.65 16 16 N -0.91 -57.99 13.53 21.45 0.29 -57.70 16 17 Si 1.11 51.93 29.90 68.60 2.05 53.98 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 O -0.39 -20.74 8.26 -148.98 -1.23 -21.97 16 22 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.51 6.57 -2.38 -0.02 1.49 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.37 7.82 -2.39 -0.02 1.35 16 31 H 0.06 2.15 6.57 -2.39 -0.02 2.14 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 39 H 0.27 17.27 6.47 -92.70 -0.60 16.67 16 Total: -1.00 -68.73 304.38 5.15 -63.58 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.14 Total: 15.63 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 2.90 Total: -53.52 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.29 Total: -57.70 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.23 Total: -21.97 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -68.73 5.15 -63.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394114786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.000 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds