Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 C 1.52999 * 109.47305 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46931 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.48146 * 60.02354 * 5 4 3 7 7 C 1.53280 * 109.46674 * 180.02562 * 5 4 3 8 8 C 1.53179 * 109.06328 * 62.44729 * 7 5 4 9 9 C 1.53177 * 109.10692 * 56.94222 * 8 7 5 10 10 C 1.53091 * 109.16264 * 302.97408 * 9 8 7 11 11 H 1.09000 * 109.48061 * 297.62689 * 10 9 8 12 12 C 1.50705 * 109.47944 * 177.59322 * 10 9 8 13 13 H 1.07996 * 120.00034 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99851 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00176 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99765 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47153 * 60.00257 * 16 14 12 18 18 H 1.48506 * 109.46890 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47272 * 299.99855 * 16 14 12 20 20 O 1.42901 * 109.48288 * 299.99943 * 5 4 3 21 21 H 1.09000 * 109.47223 * 59.99844 * 1 2 3 22 22 H 1.09003 * 109.46942 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46743 * 299.99410 * 1 2 3 24 24 H 1.09004 * 109.47182 * 240.00450 * 2 1 3 25 25 H 1.09000 * 109.47223 * 120.00156 * 2 1 3 26 26 H 1.08999 * 109.47282 * 59.99812 * 3 2 1 27 27 H 1.09004 * 109.47015 * 300.00715 * 3 2 1 28 28 H 1.08991 * 109.47226 * 60.00102 * 4 3 2 29 29 H 1.09000 * 109.46895 * 299.99959 * 4 3 2 30 30 H 1.09005 * 109.47062 * 299.97416 * 6 5 4 31 31 H 1.09006 * 109.47265 * 59.97198 * 6 5 4 32 32 H 1.08994 * 109.47412 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.64318 * 302.53209 * 7 5 4 34 34 H 1.09002 * 109.50809 * 182.28526 * 7 5 4 35 35 H 1.09002 * 109.54484 * 297.03018 * 8 7 5 36 36 H 1.08999 * 109.54222 * 176.85184 * 8 7 5 37 37 H 1.09004 * 109.52253 * 62.88396 * 9 8 7 38 38 H 1.09000 * 109.52322 * 183.06877 * 9 8 7 39 39 H 0.97003 * 119.99932 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.5711 3.6056 1.2501 7 6 5.6128 2.8850 -0.0013 8 6 6.1120 2.2162 -1.2858 9 6 5.5285 2.9541 -2.4947 10 6 4.0008 2.9509 -2.3960 11 1 3.6366 1.9241 -2.4279 12 6 3.4210 3.7262 -3.5510 13 1 4.0760 4.1766 -4.2821 14 6 2.0544 3.8614 -3.6737 15 7 1.2568 3.3133 -2.7832 16 14 1.3357 4.8229 -5.1050 17 1 1.7500 4.1912 -6.3835 18 1 -0.1462 4.8206 -5.0084 19 1 1.8320 6.2218 -5.0604 20 8 3.6033 3.5596 -1.1661 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 1.9564 -0.8900 28 1 3.9330 0.9289 -0.8908 29 1 3.9337 0.9285 0.8891 30 1 2.4810 3.6060 1.2508 31 1 3.9348 3.0909 2.1395 32 1 3.9348 4.6330 1.2507 33 1 5.9799 2.3322 0.8635 34 1 5.9769 3.9115 0.0401 35 1 5.7898 1.1750 -1.3038 36 1 7.2004 2.2617 -1.3213 37 1 5.8909 3.9821 -2.5036 38 1 5.8354 2.4509 -3.4115 39 1 0.2953 3.4088 -2.8694 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395404105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -82.076024 kcal Electronic energy + Delta-G solvation = -17244.784389 eV Core-core repulsion = 14765.082010 eV Total energy + Delta-G solvation = -2479.702379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94773 -34.73719 -33.14815 -32.37455 -31.46240 -28.60693 -27.21359 -25.11765 -23.52026 -21.97304 -20.63165 -20.13767 -17.91559 -16.48642 -15.22473 -14.69465 -14.39746 -14.22996 -14.10344 -13.40671 -12.95663 -12.79473 -12.37197 -12.02276 -11.77456 -11.58859 -11.46802 -11.14178 -10.90461 -10.81690 -10.77671 -10.56399 -10.34562 -10.26168 -10.09045 -10.05622 -9.67582 -9.41069 -9.31336 -8.71045 -8.37929 -7.68598 -5.95797 -4.06868 3.34802 3.39136 3.42196 4.45411 5.00887 5.40145 5.48349 5.58580 5.64763 5.65899 5.76228 5.80663 5.91383 6.01901 6.10848 6.24030 6.32987 6.35269 6.39287 6.42181 6.46699 6.51304 6.56732 6.65366 6.71470 6.74564 6.83425 6.92087 6.97160 6.99171 7.07973 7.25101 7.62163 7.66937 8.01265 8.37896 8.86118 9.25131 9.62818 11.10328 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.012349 C = 0.008710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.724956 B = 2266.768025 C = 3214.041871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.134 4.134 4 C -0.131 4.131 5 C 0.108 3.892 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.121 4.121 9 C -0.145 4.145 10 C 0.219 3.781 11 H 0.019 0.981 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.081 3.919 15 N -0.856 5.856 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 O -0.344 6.344 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -4.101 6.168 7.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.171 4.171 4 C -0.169 4.169 5 C 0.067 3.933 6 C -0.190 4.190 7 C -0.176 4.176 8 C -0.159 4.159 9 C -0.183 4.183 10 C 0.163 3.837 11 H 0.037 0.963 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.125 4.125 15 N -0.492 5.492 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 O -0.264 6.264 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.670 -3.966 6.230 7.853 hybrid contribution -0.131 0.248 -0.665 0.722 sum 2.539 -3.718 5.564 7.158 Atomic orbital electron populations 1.21726 0.96589 1.00173 1.01980 1.21476 0.95384 0.98440 1.00234 1.21859 0.94575 0.95404 1.05255 1.22048 0.97112 0.97311 1.00398 1.21232 0.90752 0.91898 0.89425 1.21726 1.02022 0.99849 0.95434 1.22186 0.97810 1.00462 0.97154 1.21645 0.98687 0.99535 0.96001 1.22272 1.00808 0.99330 0.95899 1.19661 0.86845 0.94563 0.82611 0.96307 1.20979 0.91607 1.36694 1.07106 0.92187 1.24988 0.97208 0.94734 0.95538 1.69848 1.03324 1.42339 1.33734 0.86727 0.77874 0.80808 0.82886 1.20312 1.21272 1.20265 1.88358 1.74124 1.51871 1.12009 0.92094 0.94020 0.93463 0.92778 0.93895 0.93532 0.85762 0.91897 0.93931 0.91793 0.93114 0.92988 0.92944 0.92163 0.92550 0.93587 0.92760 0.92792 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.97 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.65 4.72 -26.73 -0.13 -2.78 16 4 C -0.13 -2.52 3.57 -26.73 -0.10 -2.61 16 5 C 0.11 2.18 0.79 -90.47 -0.07 2.11 16 6 C -0.13 -2.40 8.49 37.16 0.32 -2.08 16 7 C -0.14 -2.50 4.94 -26.49 -0.13 -2.63 16 8 C -0.12 -2.22 5.71 -26.55 -0.15 -2.37 16 9 C -0.15 -3.14 5.36 -26.59 -0.14 -3.28 16 10 C 0.22 5.54 2.17 -27.83 -0.06 5.48 16 11 H 0.02 0.52 6.34 -51.93 -0.33 0.19 16 12 C -0.53 -14.65 8.79 -34.44 -0.30 -14.95 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 15 N -0.86 -23.91 11.25 55.43 0.62 -23.29 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 O -0.34 -8.67 8.59 -35.23 -0.30 -8.97 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.89 6.43 -51.93 -0.33 0.55 16 27 H 0.12 2.97 6.02 -51.93 -0.31 2.66 16 28 H 0.06 1.29 4.98 -51.93 -0.26 1.03 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.20 6.43 -51.93 -0.33 0.87 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.01 6.62 -51.93 -0.34 0.67 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 295.23 15.07 4.45 4.45 Total: -1.00 -27.96 295.23 -7.85 -35.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.95 Total: 0.92 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -0.65 Total: -25.12 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.62 Total: -23.29 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.30 Total: -8.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.96 -7.85 -35.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395404105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.268 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds