Wall clock time and date at job start Mon Mar 30 2020 03:15:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.47298 * 2 1
4 4 C 1.52999 * 109.47305 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.46931 * 180.02562 * 4 3 2
6 6 C 1.53002 * 109.48146 * 60.02354 * 5 4 3
7 7 C 1.53280 * 109.46674 * 180.02562 * 5 4 3
8 8 C 1.53179 * 109.06328 * 62.44729 * 7 5 4
9 9 C 1.53177 * 109.10692 * 56.94222 * 8 7 5
10 10 C 1.53091 * 109.16264 * 302.97408 * 9 8 7
11 11 H 1.09000 * 109.48061 * 297.62689 * 10 9 8
12 12 C 1.50705 * 109.47944 * 177.59322 * 10 9 8
13 13 H 1.07996 * 120.00034 * 359.97438 * 12 10 9
14 14 C 1.37877 * 119.99851 * 180.02562 * 12 10 9
15 15 N 1.31510 * 120.00176 * 359.97438 * 14 12 10
16 16 Si 1.86801 * 119.99765 * 179.97438 * 14 12 10
17 17 H 1.48501 * 109.47153 * 60.00257 * 16 14 12
18 18 H 1.48506 * 109.46890 * 180.02562 * 16 14 12
19 19 H 1.48502 * 109.47272 * 299.99855 * 16 14 12
20 20 O 1.42901 * 109.48288 * 299.99943 * 5 4 3
21 21 H 1.09000 * 109.47223 * 59.99844 * 1 2 3
22 22 H 1.09003 * 109.46942 * 180.02562 * 1 2 3
23 23 H 1.08999 * 109.46743 * 299.99410 * 1 2 3
24 24 H 1.09004 * 109.47182 * 240.00450 * 2 1 3
25 25 H 1.09000 * 109.47223 * 120.00156 * 2 1 3
26 26 H 1.08999 * 109.47282 * 59.99812 * 3 2 1
27 27 H 1.09004 * 109.47015 * 300.00715 * 3 2 1
28 28 H 1.08991 * 109.47226 * 60.00102 * 4 3 2
29 29 H 1.09000 * 109.46895 * 299.99959 * 4 3 2
30 30 H 1.09005 * 109.47062 * 299.97416 * 6 5 4
31 31 H 1.09006 * 109.47265 * 59.97198 * 6 5 4
32 32 H 1.08994 * 109.47412 * 179.97438 * 6 5 4
33 33 H 1.09006 * 109.64318 * 302.53209 * 7 5 4
34 34 H 1.09002 * 109.50809 * 182.28526 * 7 5 4
35 35 H 1.09002 * 109.54484 * 297.03018 * 8 7 5
36 36 H 1.08999 * 109.54222 * 176.85184 * 8 7 5
37 37 H 1.09004 * 109.52253 * 62.88396 * 9 8 7
38 38 H 1.09000 * 109.52322 * 183.06877 * 9 8 7
39 39 H 0.97003 * 119.99932 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 4.0800 2.8850 0.0000
6 6 3.5711 3.6056 1.2501
7 6 5.6128 2.8850 -0.0013
8 6 6.1120 2.2162 -1.2858
9 6 5.5285 2.9541 -2.4947
10 6 4.0008 2.9509 -2.3960
11 1 3.6366 1.9241 -2.4279
12 6 3.4210 3.7262 -3.5510
13 1 4.0760 4.1766 -4.2821
14 6 2.0544 3.8614 -3.6737
15 7 1.2568 3.3133 -2.7832
16 14 1.3357 4.8229 -5.1050
17 1 1.7500 4.1912 -6.3835
18 1 -0.1462 4.8206 -5.0084
19 1 1.8320 6.2218 -5.0604
20 8 3.6033 3.5596 -1.1661
21 1 -0.3634 0.5139 -0.8900
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5137 0.8900
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 1.6767 1.9564 0.8899
27 1 1.6766 1.9564 -0.8900
28 1 3.9330 0.9289 -0.8908
29 1 3.9337 0.9285 0.8891
30 1 2.4810 3.6060 1.2508
31 1 3.9348 3.0909 2.1395
32 1 3.9348 4.6330 1.2507
33 1 5.9799 2.3322 0.8635
34 1 5.9769 3.9115 0.0401
35 1 5.7898 1.1750 -1.3038
36 1 7.2004 2.2617 -1.3213
37 1 5.8909 3.9821 -2.5036
38 1 5.8354 2.4509 -3.4115
39 1 0.2953 3.4088 -2.8694
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000395404105.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:46
Heat of formation + Delta-G solvation = -82.076024 kcal
Electronic energy + Delta-G solvation = -17244.784389 eV
Core-core repulsion = 14765.082010 eV
Total energy + Delta-G solvation = -2479.702379 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.167 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.94773 -34.73719 -33.14815 -32.37455 -31.46240 -28.60693 -27.21359 -25.11765
-23.52026 -21.97304 -20.63165 -20.13767 -17.91559 -16.48642 -15.22473 -14.69465
-14.39746 -14.22996 -14.10344 -13.40671 -12.95663 -12.79473 -12.37197 -12.02276
-11.77456 -11.58859 -11.46802 -11.14178 -10.90461 -10.81690 -10.77671 -10.56399
-10.34562 -10.26168 -10.09045 -10.05622 -9.67582 -9.41069 -9.31336 -8.71045
-8.37929 -7.68598 -5.95797 -4.06868 3.34802 3.39136 3.42196 4.45411
5.00887 5.40145 5.48349 5.58580 5.64763 5.65899 5.76228 5.80663
5.91383 6.01901 6.10848 6.24030 6.32987 6.35269 6.39287 6.42181
6.46699 6.51304 6.56732 6.65366 6.71470 6.74564 6.83425 6.92087
6.97160 6.99171 7.07973 7.25101 7.62163 7.66937 8.01265 8.37896
8.86118 9.25131 9.62818 11.10328
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.019008 B = 0.012349 C = 0.008710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1472.724956 B = 2266.768025 C = 3214.041871
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.118 4.118
3 C -0.134 4.134
4 C -0.131 4.131
5 C 0.108 3.892
6 C -0.133 4.133
7 C -0.138 4.138
8 C -0.121 4.121
9 C -0.145 4.145
10 C 0.219 3.781
11 H 0.019 0.981
12 C -0.527 4.527
13 H 0.060 0.940
14 C 0.081 3.919
15 N -0.856 5.856
16 Si 0.889 3.111
17 H -0.277 1.277
18 H -0.287 1.287
19 H -0.277 1.277
20 O -0.344 6.344
21 H 0.060 0.940
22 H 0.041 0.959
23 H 0.046 0.954
24 H 0.053 0.947
25 H 0.042 0.958
26 H 0.046 0.954
27 H 0.124 0.876
28 H 0.062 0.938
29 H 0.042 0.958
30 H 0.063 0.937
31 H 0.050 0.950
32 H 0.051 0.949
33 H 0.052 0.948
34 H 0.060 0.940
35 H 0.056 0.944
36 H 0.045 0.955
37 H 0.054 0.946
38 H 0.053 0.947
39 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.977 -4.101 6.168 7.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.155 4.155
3 C -0.171 4.171
4 C -0.169 4.169
5 C 0.067 3.933
6 C -0.190 4.190
7 C -0.176 4.176
8 C -0.159 4.159
9 C -0.183 4.183
10 C 0.163 3.837
11 H 0.037 0.963
12 C -0.564 4.564
13 H 0.078 0.922
14 C -0.125 4.125
15 N -0.492 5.492
16 Si 0.717 3.283
17 H -0.203 1.203
18 H -0.213 1.213
19 H -0.203 1.203
20 O -0.264 6.264
21 H 0.079 0.921
22 H 0.060 0.940
23 H 0.065 0.935
24 H 0.072 0.928
25 H 0.061 0.939
26 H 0.065 0.935
27 H 0.142 0.858
28 H 0.081 0.919
29 H 0.061 0.939
30 H 0.082 0.918
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.071 0.929
34 H 0.078 0.922
35 H 0.075 0.925
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.072 0.928
39 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 2.670 -3.966 6.230 7.853
hybrid contribution -0.131 0.248 -0.665 0.722
sum 2.539 -3.718 5.564 7.158
Atomic orbital electron populations
1.21726 0.96589 1.00173 1.01980 1.21476 0.95384 0.98440 1.00234
1.21859 0.94575 0.95404 1.05255 1.22048 0.97112 0.97311 1.00398
1.21232 0.90752 0.91898 0.89425 1.21726 1.02022 0.99849 0.95434
1.22186 0.97810 1.00462 0.97154 1.21645 0.98687 0.99535 0.96001
1.22272 1.00808 0.99330 0.95899 1.19661 0.86845 0.94563 0.82611
0.96307 1.20979 0.91607 1.36694 1.07106 0.92187 1.24988 0.97208
0.94734 0.95538 1.69848 1.03324 1.42339 1.33734 0.86727 0.77874
0.80808 0.82886 1.20312 1.21272 1.20265 1.88358 1.74124 1.51871
1.12009 0.92094 0.94020 0.93463 0.92778 0.93895 0.93532 0.85762
0.91897 0.93931 0.91793 0.93114 0.92988 0.92944 0.92163 0.92550
0.93587 0.92760 0.92792 0.93065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.33 9.91 37.16 0.37 -1.97 16
2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16
3 C -0.13 -2.65 4.72 -26.73 -0.13 -2.78 16
4 C -0.13 -2.52 3.57 -26.73 -0.10 -2.61 16
5 C 0.11 2.18 0.79 -90.47 -0.07 2.11 16
6 C -0.13 -2.40 8.49 37.16 0.32 -2.08 16
7 C -0.14 -2.50 4.94 -26.49 -0.13 -2.63 16
8 C -0.12 -2.22 5.71 -26.55 -0.15 -2.37 16
9 C -0.15 -3.14 5.36 -26.59 -0.14 -3.28 16
10 C 0.22 5.54 2.17 -27.83 -0.06 5.48 16
11 H 0.02 0.52 6.34 -51.93 -0.33 0.19 16
12 C -0.53 -14.65 8.79 -34.44 -0.30 -14.95 16
13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16
14 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16
15 N -0.86 -23.91 11.25 55.43 0.62 -23.29 16
16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16
17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
20 O -0.34 -8.67 8.59 -35.23 -0.30 -8.97 16
21 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
26 H 0.05 0.89 6.43 -51.93 -0.33 0.55 16
27 H 0.12 2.97 6.02 -51.93 -0.31 2.66 16
28 H 0.06 1.29 4.98 -51.93 -0.26 1.03 16
29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.06 1.20 6.43 -51.93 -0.33 0.87 16
31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
35 H 0.06 1.01 6.62 -51.93 -0.34 0.67 16
36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16
38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16
39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
LS Contribution 295.23 15.07 4.45 4.45
Total: -1.00 -27.96 295.23 -7.85 -35.81
By element:
Atomic # 1 Polarization: 7.87 SS G_CDS: -6.95 Total: 0.92 kcal
Atomic # 6 Polarization: -24.46 SS G_CDS: -0.65 Total: -25.12 kcal
Atomic # 7 Polarization: -23.91 SS G_CDS: 0.62 Total: -23.29 kcal
Atomic # 8 Polarization: -8.67 SS G_CDS: -0.30 Total: -8.97 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -27.96 -7.85 -35.81 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000395404105.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.268 kcal
(2) G-P(sol) polarization free energy of solvation -27.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds