Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 C 1.52999 * 109.47305 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46931 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.48146 * 60.02354 * 5 4 3 7 7 C 1.53280 * 109.46674 * 180.02562 * 5 4 3 8 8 C 1.53179 * 109.06328 * 62.44729 * 7 5 4 9 9 C 1.53177 * 109.10692 * 56.94222 * 8 7 5 10 10 C 1.53091 * 109.16264 * 302.97408 * 9 8 7 11 11 H 1.09000 * 109.48061 * 297.62689 * 10 9 8 12 12 C 1.50705 * 109.47944 * 177.59322 * 10 9 8 13 13 H 1.07996 * 120.00034 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99851 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00176 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99765 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47153 * 60.00257 * 16 14 12 18 18 H 1.48506 * 109.46890 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47272 * 299.99855 * 16 14 12 20 20 O 1.42901 * 109.48288 * 299.99943 * 5 4 3 21 21 H 1.09000 * 109.47223 * 59.99844 * 1 2 3 22 22 H 1.09003 * 109.46942 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46743 * 299.99410 * 1 2 3 24 24 H 1.09004 * 109.47182 * 240.00450 * 2 1 3 25 25 H 1.09000 * 109.47223 * 120.00156 * 2 1 3 26 26 H 1.08999 * 109.47282 * 59.99812 * 3 2 1 27 27 H 1.09004 * 109.47015 * 300.00715 * 3 2 1 28 28 H 1.08991 * 109.47226 * 60.00102 * 4 3 2 29 29 H 1.09000 * 109.46895 * 299.99959 * 4 3 2 30 30 H 1.09005 * 109.47062 * 299.97416 * 6 5 4 31 31 H 1.09006 * 109.47265 * 59.97198 * 6 5 4 32 32 H 1.08994 * 109.47412 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.64318 * 302.53209 * 7 5 4 34 34 H 1.09002 * 109.50809 * 182.28526 * 7 5 4 35 35 H 1.09002 * 109.54484 * 297.03018 * 8 7 5 36 36 H 1.08999 * 109.54222 * 176.85184 * 8 7 5 37 37 H 1.09004 * 109.52253 * 62.88396 * 9 8 7 38 38 H 1.09000 * 109.52322 * 183.06877 * 9 8 7 39 39 H 0.97003 * 119.99932 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.5711 3.6056 1.2501 7 6 5.6128 2.8850 -0.0013 8 6 6.1120 2.2162 -1.2858 9 6 5.5285 2.9541 -2.4947 10 6 4.0008 2.9509 -2.3960 11 1 3.6366 1.9241 -2.4279 12 6 3.4210 3.7262 -3.5510 13 1 4.0760 4.1766 -4.2821 14 6 2.0544 3.8614 -3.6737 15 7 1.2568 3.3133 -2.7832 16 14 1.3357 4.8229 -5.1050 17 1 1.7500 4.1912 -6.3835 18 1 -0.1462 4.8206 -5.0084 19 1 1.8320 6.2218 -5.0604 20 8 3.6033 3.5596 -1.1661 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 1.9564 -0.8900 28 1 3.9330 0.9289 -0.8908 29 1 3.9337 0.9285 0.8891 30 1 2.4810 3.6060 1.2508 31 1 3.9348 3.0909 2.1395 32 1 3.9348 4.6330 1.2507 33 1 5.9799 2.3322 0.8635 34 1 5.9769 3.9115 0.0401 35 1 5.7898 1.1750 -1.3038 36 1 7.2004 2.2617 -1.3213 37 1 5.8909 3.9821 -2.5036 38 1 5.8354 2.4509 -3.4115 39 1 0.2953 3.4088 -2.8694 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395404105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -96.605808 kcal Electronic energy + Delta-G solvation = -17245.414448 eV Core-core repulsion = 14765.082010 eV Total energy + Delta-G solvation = -2480.332438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59899 -36.28868 -34.98261 -34.02824 -33.26129 -30.16140 -28.87185 -26.90773 -25.03561 -23.66982 -22.27108 -21.63795 -19.55947 -18.54140 -16.83394 -16.62001 -15.98854 -15.87324 -15.64393 -15.00138 -14.56622 -14.32118 -14.00934 -13.68651 -13.20593 -13.07544 -13.00758 -12.83807 -12.66280 -12.60165 -12.40616 -12.07072 -12.01636 -11.90242 -11.74310 -11.59229 -11.26378 -11.08247 -10.94583 -10.67555 -10.28901 -9.46938 -8.03300 -6.23073 1.42326 1.44212 1.50989 2.44825 3.11661 3.68557 4.02051 4.04460 4.17550 4.24598 4.27131 4.35675 4.50971 4.53921 4.60596 4.77666 4.86263 4.89767 4.95176 4.98551 5.01438 5.06869 5.10714 5.16425 5.18588 5.23636 5.29527 5.36799 5.38349 5.49296 5.53585 5.67335 5.70941 5.87411 6.11097 6.36756 6.77501 7.39737 7.52683 9.00062 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.012349 C = 0.008710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.724956 B = 2266.768025 C = 3214.041871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.134 4.134 4 C -0.124 4.124 5 C 0.092 3.908 6 C -0.128 4.128 7 C -0.134 4.134 8 C -0.116 4.116 9 C -0.142 4.142 10 C 0.224 3.776 11 H -0.009 1.009 12 C -0.559 4.559 13 H 0.054 0.946 14 C 0.035 3.965 15 N -0.874 5.874 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.277 1.277 20 O -0.376 6.376 21 H 0.034 0.966 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 -4.746 7.500 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.171 4.171 4 C -0.161 4.161 5 C 0.051 3.949 6 C -0.185 4.185 7 C -0.172 4.172 8 C -0.153 4.153 9 C -0.180 4.180 10 C 0.168 3.832 11 H 0.009 0.991 12 C -0.596 4.596 13 H 0.072 0.928 14 C -0.169 4.169 15 N -0.510 5.510 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.202 1.202 20 O -0.296 6.296 21 H 0.053 0.947 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.513 -4.615 7.564 9.531 hybrid contribution -0.394 0.440 -1.040 1.196 sum 3.118 -4.175 6.524 8.349 Atomic orbital electron populations 1.21691 0.95779 1.01497 1.01167 1.21438 0.96144 0.96706 1.00848 1.21759 0.95296 0.96760 1.03291 1.21979 0.96504 0.96818 1.00847 1.21636 0.92561 0.92359 0.88295 1.21717 1.01010 1.00049 0.95768 1.22156 0.95860 1.00883 0.98253 1.21612 1.00243 0.99050 0.94396 1.22162 0.98440 0.99433 0.97966 1.19394 0.88893 0.92423 0.82504 0.99109 1.21371 0.92266 1.37394 1.08594 0.92816 1.25723 0.97593 0.95645 0.97948 1.70014 1.03223 1.42870 1.34855 0.85773 0.77186 0.79302 0.80192 1.19524 1.20741 1.20227 1.88246 1.75274 1.52868 1.13227 0.94671 0.91606 0.92510 0.94011 0.91236 0.93130 0.90076 0.93715 0.90843 0.93410 0.89547 0.93218 0.89516 0.92450 0.92246 0.90644 0.93654 0.92689 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.91 71.98 0.71 -3.72 16 2 C -0.11 -3.78 5.93 30.59 0.18 -3.60 16 3 C -0.13 -5.28 4.72 30.59 0.14 -5.14 16 4 C -0.12 -4.60 3.57 30.59 0.11 -4.50 16 5 C 0.09 3.59 0.79 -10.70 -0.01 3.58 16 6 C -0.13 -4.40 8.49 71.98 0.61 -3.79 16 7 C -0.13 -4.47 4.94 30.75 0.15 -4.32 16 8 C -0.12 -3.98 5.71 30.71 0.18 -3.81 16 9 C -0.14 -6.14 5.36 30.68 0.16 -5.98 16 10 C 0.22 11.64 2.17 29.88 0.06 11.71 16 11 H -0.01 -0.48 6.34 -2.39 -0.02 -0.50 16 12 C -0.56 -32.07 8.79 25.60 0.23 -31.85 16 13 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 14 C 0.03 1.96 5.40 84.66 0.46 2.42 16 15 N -0.87 -50.43 11.25 21.45 0.24 -50.19 16 16 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 O -0.38 -19.28 8.59 -148.98 -1.28 -20.56 16 21 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.90 6.43 -2.39 -0.02 1.89 16 27 H 0.08 4.01 6.02 -2.38 -0.01 3.99 16 28 H 0.04 1.81 4.98 -2.39 -0.01 1.80 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 1.77 6.43 -2.38 -0.02 1.75 16 31 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.32 8.14 -2.38 -0.02 2.31 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -61.87 295.23 4.97 -56.91 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.99 Total: 16.37 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 2.99 Total: -48.98 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.24 Total: -50.19 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.28 Total: -20.56 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -61.87 4.97 -56.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395404105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.699 kcal (2) G-P(sol) polarization free energy of solvation -61.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds