Wall clock time and date at job start Mon Mar 30 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46509 * 119.99593 * 2 1 4 4 C 1.34775 * 120.00345 * 180.02562 * 2 1 3 5 5 O 1.21272 * 120.00171 * 359.97438 * 4 2 1 6 6 C 1.50697 * 119.99716 * 180.02562 * 4 2 1 7 7 N 1.46904 * 109.47023 * 179.97438 * 6 4 2 8 8 C 1.48531 * 111.00046 * 287.39473 * 7 6 4 9 9 C 1.54936 * 103.22830 * 200.27790 * 8 7 6 10 10 C 1.54599 * 102.92020 * 37.41634 * 9 8 7 11 11 H 1.08996 * 110.39267 * 97.00121 * 10 9 8 12 12 C 1.50699 * 110.30739 * 219.12954 * 10 9 8 13 13 H 1.07999 * 120.00803 * 115.71605 * 12 10 9 14 14 C 1.37881 * 119.99889 * 295.71425 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.47900 * 110.99992 * 169.99958 * 7 6 4 21 21 H 1.09001 * 109.46659 * 269.99567 * 1 2 3 22 22 H 1.08994 * 109.47590 * 30.00079 * 1 2 3 23 23 H 1.09004 * 109.46468 * 149.99969 * 1 2 3 24 24 H 1.08994 * 109.47423 * 270.00030 * 3 2 1 25 25 H 1.09001 * 109.46869 * 30.00226 * 3 2 1 26 26 H 1.08996 * 109.46995 * 149.99621 * 3 2 1 27 27 H 1.09003 * 109.47911 * 59.99872 * 6 4 2 28 28 H 1.09002 * 109.47226 * 299.99700 * 6 4 2 29 29 H 1.09005 * 110.66811 * 318.71205 * 8 7 6 30 30 H 1.09006 * 110.66427 * 81.84564 * 8 7 6 31 31 H 1.09003 * 110.72510 * 279.05957 * 9 8 7 32 32 H 1.08995 * 110.72419 * 155.77214 * 9 8 7 33 33 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.91971 * 26.49422 * 20 7 6 35 35 H 1.09003 * 110.08292 * 265.28753 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5327 -2.2174 -0.0005 6 6 3.6459 -1.1670 0.0001 7 7 4.1357 -2.5520 -0.0001 8 6 3.9219 -3.1923 1.3230 9 6 4.9245 -4.3735 1.3114 10 6 6.1490 -3.7803 0.5772 11 1 6.8894 -3.4294 1.2960 12 6 6.7580 -4.8094 -0.3398 13 1 6.7572 -4.6491 -1.4079 14 6 7.3164 -5.9558 0.1846 15 7 7.8484 -6.8538 -0.6156 16 14 7.3173 -6.2336 2.0319 17 1 6.0798 -6.9544 2.4247 18 1 7.3698 -4.9237 2.7294 19 1 8.5031 -7.0436 2.4101 20 6 5.5945 -2.5982 -0.2393 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 2.3791 1.5836 -1.0276 25 1 1.6083 2.0284 0.5139 26 1 3.1498 1.1386 0.5139 27 1 4.0090 -0.6537 0.8905 28 1 4.0096 -0.6526 -0.8895 29 1 4.1558 -2.4970 2.1292 30 1 2.8986 -3.5572 1.4128 31 1 4.5167 -5.2202 0.7593 32 1 5.1884 -4.6654 2.3278 33 1 8.2409 -7.6604 -0.2467 34 1 6.0552 -1.6683 0.0940 35 1 5.7953 -2.7527 -1.2995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:58 Heat of formation + Delta-G solvation = -16.422265 kcal Electronic energy + Delta-G solvation = -16030.481710 eV Core-core repulsion = 13450.085948 eV Total energy + Delta-G solvation = -2580.395762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86230 -37.84013 -35.45294 -33.14592 -31.31587 -28.71055 -28.35331 -27.04872 -25.21574 -23.48532 -20.73460 -19.38888 -19.13355 -17.06938 -16.72717 -16.17195 -15.92041 -14.97279 -14.44927 -13.97636 -13.84626 -13.04602 -12.92311 -12.79333 -12.68107 -12.63669 -12.39267 -12.13889 -11.67952 -11.25315 -11.16727 -10.67020 -10.46028 -10.01743 -9.84623 -9.65006 -9.36277 -8.96540 -8.75322 -8.49958 -7.82172 -6.01069 -3.98988 2.76628 2.92429 3.33848 3.41289 3.41836 4.44838 4.47377 4.66768 4.87087 5.07434 5.19580 5.25093 5.32364 5.37299 5.46061 5.50230 5.61988 5.69320 5.86838 6.01863 6.04961 6.33302 6.41928 6.63079 6.74697 6.93916 7.13876 7.20202 7.23483 7.60003 7.69309 7.83565 8.32131 8.58656 9.03056 9.61231 11.12285 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057062 B = 0.006074 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.574377 B = 4608.509595 C = 4714.975501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.633 5.633 3 C 0.079 3.921 4 C 0.513 3.487 5 O -0.513 6.513 6 C 0.030 3.970 7 N -0.498 5.498 8 C 0.039 3.961 9 C -0.129 4.129 10 C 0.005 3.995 11 H 0.032 0.968 12 C -0.503 4.503 13 H 0.076 0.924 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.267 1.267 19 H -0.294 1.294 20 C 0.055 3.945 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.024 0.976 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 16.961 3.726 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.370 5.370 3 C -0.064 4.064 4 C 0.301 3.699 5 O -0.386 6.386 6 C -0.101 4.101 7 N -0.222 5.222 8 C -0.088 4.088 9 C -0.167 4.167 10 C -0.015 4.015 11 H 0.050 0.950 12 C -0.541 4.541 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.192 1.192 19 H -0.220 1.220 20 C -0.072 4.072 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.193 15.932 3.296 19.748 hybrid contribution 0.450 0.413 1.618 1.729 sum -10.743 16.344 4.914 20.167 Atomic orbital electron populations 1.21567 0.79534 1.02923 1.01494 1.47833 1.06918 1.06477 1.75791 1.21786 0.97339 0.85387 1.01896 1.20798 0.90355 0.82965 0.75788 1.90691 1.69951 1.30726 1.47263 1.22175 0.91819 0.93760 1.02386 1.64538 1.15792 1.11956 1.29922 1.23273 1.00792 0.96357 0.88401 1.22959 0.96795 0.97800 0.99159 1.20003 0.92934 0.93645 0.94898 0.95012 1.21044 1.36387 1.02222 0.94429 0.90614 1.24980 0.94763 0.95856 0.97502 1.69904 1.39493 1.09893 1.34822 0.86921 0.77340 0.78337 0.86696 1.20188 1.19202 1.22035 1.22956 0.84707 0.97388 1.02118 0.93119 0.91576 0.90532 0.92511 0.91199 0.90921 0.92381 0.88316 0.95434 0.90187 0.90253 0.93416 0.92746 0.95721 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.44 59.85 0.62 1.47 16 2 N -0.63 -7.25 3.27 -189.52 -0.62 -7.87 16 3 C 0.08 0.58 10.24 59.85 0.61 1.19 16 4 C 0.51 7.98 7.50 -10.99 -0.08 7.90 16 5 O -0.51 -10.14 14.64 5.56 0.08 -10.06 16 6 C 0.03 0.45 3.75 -4.97 -0.02 0.44 16 7 N -0.50 -9.77 4.91 -231.88 -1.14 -10.91 16 8 C 0.04 0.78 5.93 -1.90 -0.01 0.77 16 9 C -0.13 -2.92 4.93 -24.87 -0.12 -3.05 16 10 C 0.00 0.11 2.43 -90.41 -0.22 -0.11 16 11 H 0.03 0.76 7.09 -51.93 -0.37 0.39 16 12 C -0.50 -14.33 8.96 -34.44 -0.31 -14.63 16 13 H 0.08 2.33 7.59 -52.49 -0.40 1.94 16 14 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 15 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 16 Si 0.88 22.07 24.86 -169.99 -4.23 17.84 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.39 6.40 56.52 0.36 -6.02 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 C 0.06 1.13 6.31 -2.75 -0.02 1.11 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 23 H 0.08 0.88 7.42 -51.93 -0.39 0.50 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 26 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 27 H 0.06 0.76 7.09 -51.93 -0.37 0.39 16 28 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.03 0.49 7.81 -51.93 -0.41 0.09 16 30 H 0.08 1.63 7.10 -51.93 -0.37 1.26 16 31 H 0.08 1.96 7.86 -51.93 -0.41 1.56 16 32 H 0.05 1.04 6.17 -51.93 -0.32 0.72 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.02 0.44 7.77 -51.93 -0.40 0.03 16 35 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -33.90 276.74 -6.02 -39.92 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.42 Total: -2.85 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.36 Total: -2.96 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.98 Total: -46.06 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.23 Total: 17.84 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.90 -6.02 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.497 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds