Wall clock time and date at job start Mon Mar 30 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46509 * 119.99593 * 2 1 4 4 C 1.34775 * 120.00345 * 180.02562 * 2 1 3 5 5 O 1.21272 * 120.00171 * 359.97438 * 4 2 1 6 6 C 1.50697 * 119.99716 * 180.02562 * 4 2 1 7 7 N 1.46904 * 109.47023 * 179.97438 * 6 4 2 8 8 C 1.48531 * 111.00046 * 287.39473 * 7 6 4 9 9 C 1.54936 * 103.22830 * 200.27790 * 8 7 6 10 10 C 1.54599 * 102.92020 * 37.41634 * 9 8 7 11 11 H 1.08996 * 110.39267 * 97.00121 * 10 9 8 12 12 C 1.50699 * 110.30739 * 219.12954 * 10 9 8 13 13 H 1.07999 * 120.00803 * 115.71605 * 12 10 9 14 14 C 1.37881 * 119.99889 * 295.71425 * 12 10 9 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.47900 * 110.99992 * 169.99958 * 7 6 4 21 21 H 1.09001 * 109.46659 * 269.99567 * 1 2 3 22 22 H 1.08994 * 109.47590 * 30.00079 * 1 2 3 23 23 H 1.09004 * 109.46468 * 149.99969 * 1 2 3 24 24 H 1.08994 * 109.47423 * 270.00030 * 3 2 1 25 25 H 1.09001 * 109.46869 * 30.00226 * 3 2 1 26 26 H 1.08996 * 109.46995 * 149.99621 * 3 2 1 27 27 H 1.09003 * 109.47911 * 59.99872 * 6 4 2 28 28 H 1.09002 * 109.47226 * 299.99700 * 6 4 2 29 29 H 1.09005 * 110.66811 * 318.71205 * 8 7 6 30 30 H 1.09006 * 110.66427 * 81.84564 * 8 7 6 31 31 H 1.09003 * 110.72510 * 279.05957 * 9 8 7 32 32 H 1.08995 * 110.72419 * 155.77214 * 9 8 7 33 33 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.91971 * 26.49422 * 20 7 6 35 35 H 1.09003 * 110.08292 * 265.28753 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5327 -2.2174 -0.0005 6 6 3.6459 -1.1670 0.0001 7 7 4.1357 -2.5520 -0.0001 8 6 3.9219 -3.1923 1.3230 9 6 4.9245 -4.3735 1.3114 10 6 6.1490 -3.7803 0.5772 11 1 6.8894 -3.4294 1.2960 12 6 6.7580 -4.8094 -0.3398 13 1 6.7572 -4.6491 -1.4079 14 6 7.3164 -5.9558 0.1846 15 7 7.8484 -6.8538 -0.6156 16 14 7.3173 -6.2336 2.0319 17 1 6.0798 -6.9544 2.4247 18 1 7.3698 -4.9237 2.7294 19 1 8.5031 -7.0436 2.4101 20 6 5.5945 -2.5982 -0.2393 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 2.3791 1.5836 -1.0276 25 1 1.6083 2.0284 0.5139 26 1 3.1498 1.1386 0.5139 27 1 4.0090 -0.6537 0.8905 28 1 4.0096 -0.6526 -0.8895 29 1 4.1558 -2.4970 2.1292 30 1 2.8986 -3.5572 1.4128 31 1 4.5167 -5.2202 0.7593 32 1 5.1884 -4.6654 2.3278 33 1 8.2409 -7.6604 -0.2467 34 1 6.0552 -1.6683 0.0940 35 1 5.7953 -2.7527 -1.2995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:58 Heat of formation + Delta-G solvation = -42.781748 kcal Electronic energy + Delta-G solvation = -16031.624743 eV Core-core repulsion = 13450.085948 eV Total energy + Delta-G solvation = -2581.538795 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03380 -39.35449 -36.46524 -35.09432 -33.11678 -30.17450 -29.62534 -28.05115 -26.54526 -25.14474 -22.29876 -21.19587 -20.19839 -19.00886 -17.98181 -17.36695 -16.90382 -16.62849 -15.99594 -15.52026 -15.08933 -14.83892 -14.24740 -14.13381 -13.94569 -13.48254 -13.38262 -13.24911 -13.10523 -12.82428 -12.73530 -12.51227 -12.18286 -11.81446 -11.67204 -11.43974 -11.04449 -10.78784 -10.69055 -9.63989 -9.23457 -8.26738 -6.29555 1.35001 1.36514 1.46427 1.64884 2.02173 2.36166 3.06619 3.16006 3.61805 3.96228 4.11032 4.19573 4.33056 4.38985 4.43737 4.45459 4.49137 4.52558 4.72214 4.81808 4.87172 4.92963 4.96790 5.00129 5.20024 5.35026 5.44643 5.56388 5.71487 6.05851 6.07723 6.33434 6.43179 6.75888 7.24802 7.34469 8.90438 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057062 B = 0.006074 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.574377 B = 4608.509595 C = 4714.975501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.626 5.626 3 C 0.070 3.930 4 C 0.506 3.494 5 O -0.570 6.570 6 C 0.031 3.969 7 N -0.526 5.526 8 C 0.053 3.947 9 C -0.129 4.129 10 C -0.001 4.001 11 H 0.042 0.958 12 C -0.508 4.508 13 H 0.032 0.968 14 C 0.010 3.990 15 N -0.954 5.954 16 Si 0.943 3.057 17 H -0.271 1.271 18 H -0.239 1.239 19 H -0.292 1.292 20 C 0.065 3.935 21 H 0.058 0.942 22 H 0.100 0.900 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 20.038 5.821 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.361 5.361 3 C -0.071 4.071 4 C 0.294 3.706 5 O -0.449 6.449 6 C -0.100 4.100 7 N -0.251 5.251 8 C -0.075 4.075 9 C -0.167 4.167 10 C -0.020 4.020 11 H 0.060 0.940 12 C -0.547 4.547 13 H 0.050 0.950 14 C -0.187 4.187 15 N -0.595 5.595 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.162 1.162 19 H -0.219 1.219 20 C -0.062 4.062 21 H 0.077 0.923 22 H 0.119 0.881 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.138 0.862 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.778 19.098 5.390 23.076 hybrid contribution 0.578 -0.448 0.840 1.114 sum -11.199 18.650 6.230 22.629 Atomic orbital electron populations 1.21705 0.78652 1.03339 1.02162 1.47944 1.07756 1.06769 1.73642 1.22109 0.97828 0.83819 1.03366 1.20981 0.90700 0.83370 0.75511 1.90674 1.70882 1.32934 1.50368 1.22275 0.91505 0.91365 1.04812 1.64358 1.15008 1.15476 1.30235 1.23105 0.99166 0.95650 0.89541 1.22819 0.96959 0.97984 0.98941 1.19996 0.93471 0.93771 0.94769 0.93990 1.21349 1.36232 1.03682 0.93397 0.94987 1.25890 0.94413 0.95501 1.02854 1.70063 1.41255 1.10796 1.37358 0.85882 0.77391 0.79496 0.80488 1.19617 1.16209 1.21885 1.22713 0.85732 0.97504 1.00287 0.92334 0.88136 0.93110 0.91165 0.88623 0.89995 0.89249 0.86193 0.92456 0.91222 0.93612 0.92188 0.92663 0.92029 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.44 127.77 1.33 2.76 16 2 N -0.63 -12.47 3.27 -871.89 -2.85 -15.33 16 3 C 0.07 0.71 10.24 127.77 1.31 2.02 16 4 C 0.51 14.75 7.50 87.66 0.66 15.41 16 5 O -0.57 -22.51 14.64 -3.01 -0.04 -22.56 16 6 C 0.03 0.83 3.75 85.56 0.32 1.15 16 7 N -0.53 -19.76 4.91 -887.55 -4.35 -24.11 16 8 C 0.05 1.98 5.93 86.65 0.51 2.50 16 9 C -0.13 -5.69 4.93 31.80 0.16 -5.53 16 10 C 0.00 -0.03 2.43 -10.66 -0.03 -0.06 16 11 H 0.04 1.89 7.09 -2.39 -0.02 1.87 16 12 C -0.51 -29.78 8.96 25.60 0.23 -29.55 16 13 H 0.03 2.08 7.59 -2.91 -0.02 2.06 16 14 C 0.01 0.58 5.46 84.65 0.46 1.05 16 15 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 16 Si 0.94 45.26 24.86 68.60 1.71 46.97 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.24 -10.30 6.40 99.48 0.64 -9.67 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 C 0.06 2.55 6.31 86.45 0.55 3.10 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 23 H 0.05 1.15 7.42 -2.39 -0.02 1.13 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 26 H 0.08 0.71 6.44 -2.39 -0.02 0.70 16 27 H 0.09 1.85 7.09 -2.39 -0.02 1.84 16 28 H 0.12 2.65 8.05 -2.39 -0.02 2.63 16 29 H 0.06 1.81 7.81 -2.38 -0.02 1.79 16 30 H 0.07 2.78 7.10 -2.38 -0.02 2.76 16 31 H 0.04 2.29 7.86 -2.39 -0.02 2.27 16 32 H 0.06 2.46 6.17 -2.39 -0.01 2.45 16 33 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.06 1.96 7.77 -2.39 -0.02 1.94 16 35 H 0.06 2.55 7.39 -2.39 -0.02 2.53 16 Total: -1.00 -77.21 276.74 1.24 -75.97 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.99 Total: 7.28 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.50 Total: -7.15 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -6.91 Total: -100.51 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.56 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.71 Total: 46.97 kcal Total: -77.21 1.24 -75.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.186 kcal (2) G-P(sol) polarization free energy of solvation -77.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds