Wall clock time and date at job start Mon Mar 30 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99482 * 2 1 4 4 C 1.34774 * 120.00056 * 179.72371 * 2 1 3 5 5 O 1.21280 * 120.00174 * 359.97438 * 4 2 1 6 6 C 1.50697 * 119.99965 * 180.02562 * 4 2 1 7 7 N 1.46895 * 109.47309 * 186.10760 * 6 4 2 8 8 C 1.47904 * 111.00110 * 176.64013 * 7 6 4 9 9 C 1.53993 * 107.05697 * 214.15727 * 8 7 6 10 10 C 1.54591 * 105.14247 * 1.22147 * 9 8 7 11 11 H 1.08997 * 110.72689 * 263.42549 * 10 9 8 12 12 C 1.50703 * 110.72368 * 140.31391 * 10 9 8 13 13 H 1.08002 * 119.99723 * 241.45259 * 12 10 9 14 14 C 1.37878 * 119.99786 * 61.46055 * 12 10 9 15 15 N 1.31517 * 120.00119 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99761 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47283 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47037 * 119.99872 * 16 14 12 19 19 H 1.48500 * 109.46709 * 239.99613 * 16 14 12 20 20 C 1.48533 * 110.99876 * 59.24246 * 7 6 4 21 21 H 1.08995 * 109.47413 * 270.27106 * 1 2 3 22 22 H 1.09003 * 109.47227 * 30.27807 * 1 2 3 23 23 H 1.09004 * 109.46667 * 150.27658 * 1 2 3 24 24 H 1.08997 * 109.47038 * 239.72256 * 3 2 1 25 25 H 1.08995 * 109.47326 * 359.72345 * 3 2 1 26 26 H 1.09004 * 109.46776 * 119.72456 * 3 2 1 27 27 H 1.08996 * 109.47215 * 306.11119 * 6 4 2 28 28 H 1.09007 * 109.46914 * 66.10585 * 6 4 2 29 29 H 1.09003 * 109.91538 * 333.50957 * 8 7 6 30 30 H 1.09000 * 109.91418 * 94.60454 * 8 7 6 31 31 H 1.08998 * 110.30689 * 120.13961 * 9 8 7 32 32 H 1.08999 * 110.30653 * 242.30509 * 9 8 7 33 33 H 0.96991 * 119.99798 * 179.97438 * 15 14 12 34 34 H 1.09003 * 110.66645 * 278.15191 * 20 7 6 35 35 H 1.08998 * 110.66299 * 41.28780 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 0.0056 5 8 1.5326 -2.2175 0.0112 6 6 3.6459 -1.1671 0.0062 7 7 4.1357 -2.5448 -0.1346 8 6 5.6120 -2.5766 -0.2186 9 6 5.9858 -3.7322 -1.1654 10 6 4.6363 -4.3252 -1.6311 11 1 4.3667 -5.1916 -1.0272 12 6 4.6907 -4.6918 -3.0919 13 1 4.0246 -4.2125 -3.7940 14 6 5.5906 -5.6392 -3.5318 15 7 6.4020 -6.2226 -2.6768 16 14 5.6575 -6.0941 -5.3424 17 1 4.6486 -5.3012 -6.0896 18 1 7.0121 -5.8019 -5.8764 19 1 5.3649 -7.5414 -5.5001 20 6 3.6450 -3.1579 -1.3954 21 1 -0.3634 0.0049 1.0276 22 1 -0.3634 0.8875 -0.5182 23 1 -0.3633 -0.8925 -0.5096 24 1 2.8278 1.3244 -0.8875 25 1 1.4891 2.0972 -0.0050 26 1 2.8204 1.3287 0.8925 27 1 4.0096 -0.5653 -0.8266 28 1 4.0089 -0.7465 0.9441 29 1 5.9814 -1.6331 -0.6204 30 1 6.0365 -2.7505 0.7701 31 1 6.5481 -3.3547 -2.0194 32 1 6.5661 -4.4853 -0.6323 33 1 7.0348 -6.8893 -2.9862 34 1 2.6298 -3.5346 -1.2704 35 1 3.6925 -2.4414 -2.2154 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:00 Heat of formation + Delta-G solvation = -47.503719 kcal Electronic energy + Delta-G solvation = -16066.633995 eV Core-core repulsion = 13484.890440 eV Total energy + Delta-G solvation = -2581.743555 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07415 -39.17538 -36.48576 -35.15238 -32.67372 -30.07949 -29.34416 -27.96650 -26.66013 -25.31201 -21.89903 -21.45682 -20.19900 -18.44108 -17.99721 -17.10294 -16.90121 -16.58477 -16.34925 -15.56574 -14.99438 -14.49713 -14.24720 -13.92613 -13.77332 -13.49428 -13.41152 -13.19368 -12.97244 -12.88269 -12.71990 -12.55185 -12.28011 -12.00816 -11.63113 -11.12683 -10.83321 -10.70994 -10.50996 -9.64485 -9.27044 -8.14607 -6.25868 1.39211 1.40707 1.52917 1.63029 2.02833 2.41724 3.15143 3.22487 3.61159 4.07471 4.23990 4.29290 4.36597 4.43865 4.46304 4.52496 4.56794 4.58629 4.81345 4.87447 4.92061 4.95837 5.07776 5.28050 5.31544 5.57738 5.59947 5.77723 5.85945 6.00023 6.09402 6.37014 6.43238 6.83386 7.23751 7.41839 8.95308 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.040928 B = 0.006359 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.957022 B = 4401.926798 C = 4718.415686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.626 5.626 3 C 0.072 3.928 4 C 0.503 3.497 5 O -0.570 6.570 6 C 0.033 3.967 7 N -0.523 5.523 8 C 0.045 3.955 9 C -0.092 4.092 10 C 0.040 3.960 11 H -0.007 1.007 12 C -0.536 4.536 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.959 3.041 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.280 1.280 20 C 0.064 3.936 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 18.059 5.077 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.361 5.361 3 C -0.069 4.069 4 C 0.291 3.709 5 O -0.449 6.449 6 C -0.098 4.098 7 N -0.248 5.248 8 C -0.082 4.082 9 C -0.131 4.131 10 C 0.021 3.979 11 H 0.011 0.989 12 C -0.574 4.574 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.206 1.206 20 C -0.064 4.064 21 H 0.079 0.921 22 H 0.120 0.880 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.945 17.138 5.561 18.972 hybrid contribution 0.340 -0.313 -1.534 1.602 sum -5.604 16.825 4.027 18.185 Atomic orbital electron populations 1.21751 0.78587 1.03295 1.02261 1.47941 1.07794 1.06756 1.73582 1.22101 0.98078 0.83843 1.02921 1.20989 0.90849 0.83434 0.75621 1.90683 1.70965 1.32899 1.50303 1.22295 0.91232 0.91467 1.04798 1.64556 1.07812 1.16328 1.36097 1.22920 0.86942 0.98275 1.00069 1.22074 0.98575 0.95777 0.96656 1.19507 0.91684 0.92042 0.94705 0.98873 1.21421 1.19457 1.22810 0.93724 0.93169 1.25784 0.95050 0.95646 1.02026 1.70115 1.22333 1.27402 1.35749 0.85496 0.78121 0.77962 0.80016 1.19271 1.19990 1.20592 1.23048 0.98851 0.96167 0.88290 0.92148 0.87956 0.93387 0.91503 0.87721 0.90508 0.90465 0.85216 0.92272 0.89807 0.94126 0.94187 0.92891 0.92415 0.95573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 10.40 127.77 1.33 2.94 16 2 N -0.63 -14.06 3.27 -871.89 -2.85 -16.91 16 3 C 0.07 0.87 9.73 127.77 1.24 2.11 16 4 C 0.50 16.27 7.31 87.66 0.64 16.91 16 5 O -0.57 -24.61 13.88 -3.03 -0.04 -24.65 16 6 C 0.03 0.97 4.16 85.56 0.36 1.32 16 7 N -0.52 -21.08 5.11 -887.56 -4.53 -25.62 16 8 C 0.05 1.71 6.70 86.45 0.58 2.29 16 9 C -0.09 -4.52 5.50 31.47 0.17 -4.35 16 10 C 0.04 2.21 2.99 -10.33 -0.03 2.18 16 11 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 12 C -0.54 -31.46 8.42 25.60 0.22 -31.25 16 13 H 0.05 2.91 7.78 -2.91 -0.02 2.89 16 14 C 0.01 0.81 5.33 84.65 0.45 1.26 16 15 N -0.92 -55.12 12.44 21.45 0.27 -54.85 16 16 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C 0.06 3.07 5.00 86.65 0.43 3.50 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.10 1.21 7.92 -2.39 -0.02 1.19 16 23 H 0.05 1.22 7.42 -2.39 -0.02 1.20 16 24 H 0.07 0.77 7.67 -2.39 -0.02 0.75 16 25 H 0.10 0.68 7.80 -2.39 -0.02 0.66 16 26 H 0.08 0.73 8.06 -2.38 -0.02 0.71 16 27 H 0.08 1.98 7.44 -2.39 -0.02 1.96 16 28 H 0.13 2.91 8.12 -2.38 -0.02 2.89 16 29 H 0.06 1.88 7.68 -2.39 -0.02 1.86 16 30 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.04 2.06 7.84 -2.39 -0.02 2.04 16 32 H 0.04 2.08 8.05 -2.39 -0.02 2.06 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.06 3.03 6.43 -2.39 -0.02 3.02 16 35 H 0.03 1.23 7.91 -2.39 -0.02 1.21 16 Total: -1.00 -74.86 283.96 1.30 -73.56 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.05 Total: 4.55 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.39 Total: -3.07 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -7.12 Total: -97.38 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.04 Total: -24.65 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.86 1.30 -73.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.053 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds