Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99801 * 2 1 4 4 C 1.46903 * 110.99844 * 123.95020 * 2 1 3 5 5 C 1.50701 * 109.46877 * 66.04813 * 4 2 1 6 6 O 1.21282 * 120.00364 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99856 * 179.97438 * 5 4 2 8 8 C 1.47019 * 125.65068 * 0.02562 * 7 5 4 9 9 C 1.54321 * 107.27531 * 178.90607 * 8 7 5 10 10 C 1.55157 * 103.10033 * 337.71659 * 9 8 7 11 11 H 1.09001 * 111.00741 * 277.51995 * 10 9 8 12 12 C 1.50699 * 111.00343 * 153.66431 * 10 9 8 13 13 H 1.08007 * 120.00041 * 241.45467 * 12 10 9 14 14 C 1.37871 * 120.00170 * 61.45766 * 12 10 9 15 15 N 1.31516 * 119.99916 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00117 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47133 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46934 * 119.99857 * 16 14 12 19 19 H 1.48497 * 109.47354 * 239.99735 * 16 14 12 20 20 C 1.47431 * 125.64789 * 179.97438 * 7 5 4 21 21 H 1.09000 * 109.47264 * 296.05089 * 1 2 3 22 22 H 1.09005 * 109.46685 * 56.04897 * 1 2 3 23 23 H 1.09003 * 109.47097 * 176.04867 * 1 2 3 24 24 H 1.08996 * 109.46889 * 183.94717 * 3 2 1 25 25 H 1.09001 * 109.47237 * 303.94920 * 3 2 1 26 26 H 1.09003 * 109.47076 * 63.95397 * 3 2 1 27 27 H 1.09003 * 109.47358 * 306.04836 * 4 2 1 28 28 H 1.08999 * 109.46955 * 186.04695 * 4 2 1 29 29 H 1.09001 * 109.88251 * 59.48348 * 8 7 5 30 30 H 1.09004 * 109.88394 * 298.32261 * 8 7 5 31 31 H 1.09002 * 110.72109 * 96.17040 * 9 8 7 32 32 H 1.09003 * 110.72356 * 219.26865 * 9 8 7 33 33 H 0.97000 * 120.00326 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.36190 * 322.99854 * 20 7 5 35 35 H 1.08998 * 110.36491 * 85.21533 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6369 -2.2204 0.9729 6 8 1.0047 -2.5831 0.0036 7 7 2.0189 -3.1180 1.9029 8 6 2.7849 -2.8167 3.1210 9 6 2.9628 -4.1427 3.8902 10 6 1.8020 -5.0202 3.3517 11 1 0.8699 -4.7964 3.8705 12 6 2.1385 -6.4853 3.4575 13 1 2.1945 -7.0923 2.5660 14 6 2.3747 -7.0509 4.6925 15 7 2.3069 -6.3117 5.7781 16 14 2.7910 -8.8672 4.8238 17 1 2.8051 -9.4711 3.4673 18 1 4.1288 -9.0245 5.4489 19 1 1.7708 -9.5498 5.6595 20 6 1.7368 -4.5647 1.8676 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0253 -0.0708 24 1 3.0827 1.3432 -0.0707 25 1 1.5899 1.9163 -0.8525 26 1 1.7044 1.8724 0.9233 27 1 1.5611 -0.3872 2.0629 28 1 3.0797 -0.6610 1.1757 29 1 2.2376 -2.1021 3.7358 30 1 3.7600 -2.4091 2.8545 31 1 3.9273 -4.5955 3.6602 32 1 2.8595 -3.9829 4.9635 33 1 2.4735 -6.7095 6.6470 34 1 0.7432 -4.7475 1.4584 35 1 2.4912 -5.0839 1.2765 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397613602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -28.090631 kcal Electronic energy + Delta-G solvation = -15919.202739 eV Core-core repulsion = 13338.300999 eV Total energy + Delta-G solvation = -2580.901740 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56638 -37.30565 -36.00311 -33.05748 -30.59825 -28.66880 -27.95535 -27.50965 -24.85004 -22.71347 -21.70401 -19.75679 -18.65393 -16.92042 -16.42482 -15.73100 -15.39956 -14.78181 -14.66292 -14.46287 -13.77293 -13.35337 -12.63029 -12.55107 -12.42273 -12.08468 -11.87081 -11.67346 -11.61911 -11.26906 -11.21634 -10.99922 -10.77670 -10.47029 -9.80996 -9.46691 -9.26787 -8.97709 -8.49977 -8.32864 -7.96117 -6.12655 -4.16141 3.08294 3.25464 3.33853 3.36800 3.42359 4.11963 4.37632 4.90881 5.07623 5.21754 5.27030 5.31724 5.37339 5.60045 5.61421 5.65529 5.73484 5.82835 5.99733 6.16468 6.21604 6.38208 6.62844 6.79582 6.89764 7.00446 7.01532 7.13163 7.46770 7.69615 7.87567 8.15611 8.27503 8.69265 8.85981 9.49226 10.97220 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.067091 B = 0.005511 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.244992 B = 5079.077769 C = 5293.722020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.026 3.974 4 C 0.040 3.960 5 C 0.522 3.478 6 O -0.539 6.539 7 N -0.614 5.614 8 C 0.094 3.906 9 C -0.110 4.110 10 C 0.046 3.954 11 H 0.038 0.962 12 C -0.514 4.514 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.109 3.891 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 12.130 -4.638 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.123 4.123 4 C -0.091 4.091 5 C 0.309 3.691 6 O -0.417 6.417 7 N -0.347 5.347 8 C -0.029 4.029 9 C -0.148 4.148 10 C 0.027 3.973 11 H 0.056 0.944 12 C -0.553 4.553 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.013 4.013 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.647 11.758 -5.450 12.976 hybrid contribution 0.106 -0.454 1.075 1.172 sum 0.754 11.305 -4.375 12.145 Atomic orbital electron populations 1.22573 0.86515 1.04326 0.99526 1.61635 1.08980 1.12971 1.41934 1.22411 1.00766 0.88604 1.00491 1.21975 1.01755 0.92265 0.93066 1.20014 0.79906 0.87029 0.82149 1.90621 1.40546 1.80470 1.30095 1.48761 1.54303 1.09509 1.22163 1.22286 0.94084 1.00616 0.85938 1.22605 1.00919 0.91455 0.99829 1.19916 0.94731 0.94894 0.87773 0.94433 1.20997 1.48124 0.93167 0.92994 0.92109 1.24947 0.94990 0.98053 0.95710 1.69951 1.49200 1.35623 0.97961 0.86493 0.77970 0.85090 0.78232 1.19650 1.20987 1.20976 1.22659 0.99847 0.77654 1.01124 0.96274 0.91639 0.89097 0.91349 0.91147 0.95734 0.92175 0.88231 0.92747 0.92910 0.92101 0.89904 0.92932 0.92159 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.21 60.07 0.55 0.80 16 2 N -0.53 -7.45 4.76 -252.71 -1.20 -8.65 16 3 C 0.03 0.26 9.57 60.06 0.57 0.84 16 4 C 0.04 0.58 4.64 -4.97 -0.02 0.55 16 5 C 0.52 9.72 7.58 -10.98 -0.08 9.64 16 6 O -0.54 -11.73 14.56 5.56 0.08 -11.65 16 7 N -0.61 -11.84 3.33 -170.22 -0.57 -12.41 16 8 C 0.09 1.63 6.49 -3.07 -0.02 1.61 16 9 C -0.11 -2.34 5.64 -24.90 -0.14 -2.48 16 10 C 0.05 1.10 2.98 -89.37 -0.27 0.83 16 11 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.51 -13.56 8.57 -34.44 -0.30 -13.85 16 13 H 0.06 1.60 7.79 -52.48 -0.41 1.19 16 14 C 0.07 1.73 5.34 -17.82 -0.10 1.63 16 15 N -0.89 -24.24 12.12 55.43 0.67 -23.57 16 16 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.11 2.36 6.37 -2.27 -0.01 2.35 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 23 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 24 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 28 H 0.10 1.25 8.06 -51.93 -0.42 0.83 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 32 H 0.08 1.87 7.54 -51.93 -0.39 1.48 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 35 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -29.30 286.89 -7.23 -36.53 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.71 Total: -2.06 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 0.19 Total: 1.92 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -1.10 Total: -44.63 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.30 -7.23 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397613602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.441 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds