Wall clock time and date at job start Mon Mar 30 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00580 * 2 1 4 4 O 1.21289 * 119.99307 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00507 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.27462 * 59.29795 * 5 3 2 7 7 C 1.54597 * 110.30905 * 297.21049 * 5 3 2 8 8 C 1.55103 * 102.84721 * 219.18592 * 7 5 3 9 9 N 1.48531 * 103.28575 * 37.30270 * 8 7 5 10 10 C 1.46894 * 111.00323 * 200.33608 * 9 8 7 11 11 C 1.53006 * 109.46719 * 287.39609 * 10 9 8 12 12 C 1.50706 * 109.46837 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99961 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00034 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99633 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99936 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47350 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47047 * 120.00244 * 16 14 12 19 19 H 1.48498 * 109.47172 * 239.99758 * 16 14 12 20 20 C 1.47909 * 105.81964 * 320.85169 * 9 8 7 21 21 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46813 * 59.99993 * 1 2 3 23 23 H 1.09004 * 109.47041 * 300.00120 * 1 2 3 24 24 H 0.97002 * 120.00016 * 179.97438 * 2 1 3 25 25 H 1.09003 * 110.72207 * 337.48503 * 7 5 3 26 26 H 1.09001 * 110.72733 * 100.76308 * 7 5 3 27 27 H 1.08998 * 110.59148 * 278.86944 * 8 7 5 28 28 H 1.08998 * 110.82840 * 155.84655 * 8 7 5 29 29 H 1.08996 * 109.46962 * 47.39487 * 10 9 8 30 30 H 1.09007 * 109.47184 * 167.39815 * 10 9 8 31 31 H 1.08996 * 109.47305 * 299.99668 * 11 10 9 32 32 H 1.08993 * 109.47038 * 60.00373 * 11 10 9 33 33 H 0.97003 * 119.99937 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.91434 * 265.97675 * 20 9 8 35 35 H 1.09001 * 109.91987 * 144.68210 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0233 0.6453 -0.8800 7 6 4.1830 0.5039 1.2885 8 6 5.4021 1.3916 1.6509 9 7 4.9478 2.7590 1.2903 10 6 6.0916 3.6619 1.1049 11 6 6.7100 3.9876 2.4660 12 6 7.8838 4.9134 2.2757 13 1 8.1607 5.2375 1.2833 14 6 8.6036 5.3476 3.3686 15 7 8.2661 4.9533 4.5770 16 14 10.0589 6.4946 3.1327 17 1 10.2301 6.7864 1.6867 18 1 9.8146 7.7619 3.8674 19 1 11.2888 5.8481 3.6567 20 6 4.1805 2.6108 0.0345 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.9500 -0.8401 0.0004 25 1 3.4339 0.5360 2.0797 26 1 4.4953 -0.5220 1.0932 27 1 6.2727 1.1071 1.0601 28 1 5.6244 1.3286 2.7162 29 1 6.8370 3.1790 0.4732 30 1 5.7541 4.5830 0.6294 31 1 5.9645 4.4705 3.0976 32 1 7.0475 3.0666 2.9413 33 1 8.7727 5.2584 5.3459 34 1 4.8319 2.7865 -0.8216 35 1 3.3487 3.3152 0.0223 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398559996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:15 Heat of formation + Delta-G solvation = -42.131083 kcal Electronic energy + Delta-G solvation = -15574.898087 eV Core-core repulsion = 12993.387507 eV Total energy + Delta-G solvation = -2581.510580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.13449 -37.84683 -34.71030 -33.66140 -31.97934 -28.96824 -28.77791 -26.74781 -24.31373 -21.99322 -21.59247 -19.94445 -19.84098 -17.54660 -16.38319 -16.04724 -15.51263 -14.87519 -14.69446 -14.36977 -13.97619 -13.60381 -13.03522 -12.60805 -12.42917 -12.24388 -12.00435 -11.77240 -11.35466 -11.22271 -10.97773 -10.80956 -10.66709 -10.47888 -9.78444 -9.77301 -9.33729 -9.27581 -9.06750 -8.30170 -7.75533 -5.95739 -3.97999 2.62268 3.10616 3.33764 3.41035 3.45220 4.43233 4.52690 4.62146 4.70671 4.91771 5.05759 5.27060 5.32233 5.40195 5.50062 5.58932 5.63746 5.81136 5.92111 6.12419 6.19983 6.24762 6.37235 6.43294 6.53468 7.02378 7.32932 7.46543 7.54245 7.80919 7.94531 8.13307 8.16883 8.47849 9.09668 9.65485 11.15756 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.070261 B = 0.004650 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.415823 B = 6019.825397 C = 6113.974195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.523 3.477 4 O -0.530 6.530 5 C -0.121 4.121 6 H 0.098 0.902 7 C -0.112 4.112 8 C 0.039 3.961 9 N -0.514 5.514 10 C 0.054 3.946 11 C 0.029 3.971 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.043 3.957 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.401 0.599 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.043 0.957 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 -13.596 -9.309 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.392 5.392 3 C 0.310 3.690 4 O -0.406 6.406 5 C -0.143 4.143 6 H 0.116 0.884 7 C -0.151 4.151 8 C -0.089 4.089 9 N -0.239 5.239 10 C -0.073 4.073 11 C -0.008 4.008 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.086 4.086 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.234 0.766 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.874 -12.552 -8.725 19.357 hybrid contribution 1.571 -0.169 -0.714 1.734 sum -10.304 -12.721 -9.439 18.897 Atomic orbital electron populations 1.21513 0.79885 1.01932 1.02335 1.45801 1.07597 1.08794 1.76983 1.20577 0.90137 0.83382 0.74943 1.90692 1.70120 1.31262 1.48478 1.22179 0.91563 0.99900 1.00642 0.88417 1.22542 0.98657 0.98372 0.95506 1.23233 0.94879 0.88549 1.02231 1.64907 1.22913 1.08092 1.27964 1.22518 0.89077 0.94508 1.01165 1.19044 0.94849 0.96566 0.90339 1.21251 1.13258 1.28482 0.92990 0.92762 1.24995 0.97626 0.96489 0.95241 1.69989 1.40276 1.44977 0.98016 0.86545 0.82545 0.80765 0.78182 1.19785 1.20988 1.21068 1.22901 0.98905 0.94338 0.92446 0.90872 0.92392 0.92221 0.76571 0.90531 0.90701 0.93817 0.89418 0.95932 0.92042 0.95675 0.96616 0.93094 0.93853 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.85 0.64 1.34 16 2 N -0.74 -6.83 5.67 -67.08 -0.38 -7.21 16 3 C 0.52 6.97 7.02 -10.99 -0.08 6.89 16 4 O -0.53 -9.37 15.24 5.55 0.08 -9.28 16 5 C -0.12 -1.52 3.38 -90.42 -0.31 -1.82 16 6 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.11 -1.36 6.58 -24.78 -0.16 -1.52 16 8 C 0.04 0.64 5.91 -1.81 -0.01 0.63 16 9 N -0.51 -9.95 5.25 -230.34 -1.21 -11.16 16 10 C 0.05 1.20 4.64 -3.82 -0.02 1.18 16 11 C 0.03 0.79 5.06 -27.88 -0.14 0.65 16 12 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.04 0.70 6.27 -2.75 -0.02 0.68 16 21 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.40 2.44 8.83 -40.82 -0.36 2.08 16 25 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.69 7.81 -51.93 -0.41 0.29 16 28 H 0.09 1.54 7.80 -51.93 -0.40 1.14 16 29 H 0.02 0.48 7.83 -51.93 -0.41 0.08 16 30 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.44 7.36 -51.93 -0.38 0.05 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.04 0.67 7.77 -51.93 -0.40 0.27 16 35 H 0.10 1.80 6.42 -51.93 -0.33 1.46 16 LS Contribution 289.09 15.07 4.36 4.36 Total: -1.00 -34.08 289.09 -7.54 -41.61 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.60 Total: -2.88 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.50 Total: -5.79 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.85 Total: -44.97 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.08 -7.54 -41.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398559996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.516 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds