Wall clock time and date at job start Mon Mar 30 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00580 * 2 1 4 4 O 1.21289 * 119.99307 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00507 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.27462 * 59.29795 * 5 3 2 7 7 C 1.54597 * 110.30905 * 297.21049 * 5 3 2 8 8 C 1.55103 * 102.84721 * 219.18592 * 7 5 3 9 9 N 1.48531 * 103.28575 * 37.30270 * 8 7 5 10 10 C 1.46894 * 111.00323 * 200.33608 * 9 8 7 11 11 C 1.53006 * 109.46719 * 287.39609 * 10 9 8 12 12 C 1.50706 * 109.46837 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99961 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00034 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99633 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99936 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47350 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47047 * 120.00244 * 16 14 12 19 19 H 1.48498 * 109.47172 * 239.99758 * 16 14 12 20 20 C 1.47909 * 105.81964 * 320.85169 * 9 8 7 21 21 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46813 * 59.99993 * 1 2 3 23 23 H 1.09004 * 109.47041 * 300.00120 * 1 2 3 24 24 H 0.97002 * 120.00016 * 179.97438 * 2 1 3 25 25 H 1.09003 * 110.72207 * 337.48503 * 7 5 3 26 26 H 1.09001 * 110.72733 * 100.76308 * 7 5 3 27 27 H 1.08998 * 110.59148 * 278.86944 * 8 7 5 28 28 H 1.08998 * 110.82840 * 155.84655 * 8 7 5 29 29 H 1.08996 * 109.46962 * 47.39487 * 10 9 8 30 30 H 1.09007 * 109.47184 * 167.39815 * 10 9 8 31 31 H 1.08996 * 109.47305 * 299.99668 * 11 10 9 32 32 H 1.08993 * 109.47038 * 60.00373 * 11 10 9 33 33 H 0.97003 * 119.99937 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.91434 * 265.97675 * 20 9 8 35 35 H 1.09001 * 109.91987 * 144.68210 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0233 0.6453 -0.8800 7 6 4.1830 0.5039 1.2885 8 6 5.4021 1.3916 1.6509 9 7 4.9478 2.7590 1.2903 10 6 6.0916 3.6619 1.1049 11 6 6.7100 3.9876 2.4660 12 6 7.8838 4.9134 2.2757 13 1 8.1607 5.2375 1.2833 14 6 8.6036 5.3476 3.3686 15 7 8.2661 4.9533 4.5770 16 14 10.0589 6.4946 3.1327 17 1 10.2301 6.7864 1.6867 18 1 9.8146 7.7619 3.8674 19 1 11.2888 5.8481 3.6567 20 6 4.1805 2.6108 0.0345 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.9500 -0.8401 0.0004 25 1 3.4339 0.5360 2.0797 26 1 4.4953 -0.5220 1.0932 27 1 6.2727 1.1071 1.0601 28 1 5.6244 1.3286 2.7162 29 1 6.8370 3.1790 0.4732 30 1 5.7541 4.5830 0.6294 31 1 5.9645 4.4705 3.0976 32 1 7.0475 3.0666 2.9413 33 1 8.7727 5.2584 5.3459 34 1 4.8319 2.7865 -0.8216 35 1 3.3487 3.3152 0.0223 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398559996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:15 Heat of formation + Delta-G solvation = -68.801729 kcal Electronic energy + Delta-G solvation = -15576.054613 eV Core-core repulsion = 12993.387507 eV Total energy + Delta-G solvation = -2582.667106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22520 -39.15183 -35.66602 -35.59270 -33.72098 -30.67241 -30.04481 -27.75846 -26.17887 -23.26841 -23.06202 -21.54666 -20.90917 -18.63088 -18.48025 -17.10115 -16.61891 -16.53213 -15.93873 -15.88691 -15.52918 -14.84076 -14.37334 -14.01487 -13.72827 -13.68808 -13.34261 -13.05541 -12.87250 -12.83178 -12.49601 -12.36284 -12.32949 -11.80139 -11.71058 -11.36176 -11.22654 -10.85749 -10.56059 -10.12207 -9.25053 -8.20329 -6.32205 1.39915 1.41159 1.54408 1.61616 2.27474 2.40580 3.12907 3.18216 3.46229 3.66004 3.92413 4.27920 4.34515 4.43044 4.46419 4.52090 4.57612 4.64096 4.75413 4.89970 4.96315 5.00148 5.02903 5.12993 5.15051 5.44719 5.47321 5.62796 5.78225 6.07514 6.15335 6.31574 6.56790 6.84936 7.27837 7.37077 8.92272 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.070261 B = 0.004650 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.415823 B = 6019.825397 C = 6113.974195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.519 3.481 4 O -0.584 6.584 5 C -0.111 4.111 6 H 0.138 0.862 7 C -0.096 4.096 8 C 0.032 3.968 9 N -0.541 5.541 10 C 0.072 3.928 11 C 0.039 3.961 12 C -0.545 4.545 13 H 0.060 0.940 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.275 1.275 20 C 0.040 3.960 21 H 0.114 0.886 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.420 0.580 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.054 0.946 31 H -0.014 1.014 32 H -0.004 1.004 33 H 0.264 0.736 34 H 0.054 0.946 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 -15.372 -10.790 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.372 5.372 3 C 0.306 3.694 4 O -0.464 6.464 5 C -0.132 4.132 6 H 0.156 0.844 7 C -0.134 4.134 8 C -0.095 4.095 9 N -0.266 5.266 10 C -0.056 4.056 11 C 0.001 3.999 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.088 4.088 21 H 0.133 0.867 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.257 0.743 25 H 0.087 0.913 26 H 0.141 0.859 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.004 0.996 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.421 -14.396 -10.219 21.027 hybrid contribution 1.360 0.338 -0.217 1.418 sum -10.061 -14.058 -10.436 20.193 Atomic orbital electron populations 1.21671 0.78940 1.04277 1.01188 1.45672 1.08269 1.08441 1.74795 1.20742 0.90490 0.83679 0.74515 1.90681 1.71038 1.33375 1.51297 1.22144 0.91152 0.97435 1.02485 0.84416 1.22509 0.96213 0.99822 0.94852 1.23296 0.97332 0.87878 1.01035 1.64733 1.22069 1.09625 1.30146 1.22128 0.90171 0.95279 0.98008 1.18862 0.93748 0.94983 0.92300 1.21663 1.14064 1.29134 0.93505 0.92147 1.25995 1.00847 0.98155 0.94748 1.70127 1.41797 1.46261 0.99044 0.85343 0.78420 0.78203 0.78712 1.18536 1.20454 1.20047 1.22839 0.97846 0.96824 0.91259 0.86731 0.93182 0.93836 0.74256 0.91338 0.85882 0.92947 0.91727 0.95025 0.92754 0.99581 0.98562 0.92725 0.92813 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.70 127.77 1.37 2.51 16 2 N -0.72 -11.18 5.67 -484.52 -2.75 -13.92 16 3 C 0.52 12.98 7.02 87.65 0.62 13.59 16 4 O -0.58 -20.83 15.24 -3.06 -0.05 -20.87 16 5 C -0.11 -2.49 3.38 -10.66 -0.04 -2.52 16 6 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.10 -2.05 6.58 31.86 0.21 -1.84 16 8 C 0.03 1.03 5.91 86.71 0.51 1.55 16 9 N -0.54 -21.27 5.25 -882.66 -4.63 -25.90 16 10 C 0.07 3.26 4.64 86.31 0.40 3.66 16 11 C 0.04 2.16 5.06 29.85 0.15 2.32 16 12 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 14 C 0.00 0.02 5.46 84.65 0.46 0.49 16 15 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 16 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 C 0.04 1.31 6.27 86.44 0.54 1.85 16 21 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.42 3.26 8.83 -92.71 -0.82 2.44 16 25 H 0.07 1.60 7.86 -2.39 -0.02 1.58 16 26 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.58 7.81 -2.39 -0.02 1.57 16 28 H 0.06 2.34 7.80 -2.39 -0.02 2.32 16 29 H 0.03 1.35 7.83 -2.39 -0.02 1.34 16 30 H 0.05 2.48 8.08 -2.38 -0.02 2.46 16 31 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.00 -0.24 7.36 -2.39 -0.02 -0.25 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.05 1.61 7.77 -2.39 -0.02 1.59 16 35 H 0.07 2.73 6.42 -2.39 -0.02 2.71 16 Total: -1.00 -77.50 289.09 -0.41 -77.90 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.25 Total: 3.98 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.46 Total: -10.37 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -7.09 Total: -97.84 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -77.50 -0.41 -77.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398559996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.102 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds