Wall clock time and date at job start Mon Mar 30 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99988 * 2 1 4 4 C 1.52994 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47153 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00330 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00258 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47269 * 184.79147 * 8 7 5 10 10 C 1.50694 * 115.55114 * 294.81128 * 9 8 7 11 11 H 1.08008 * 119.99906 * 95.20873 * 10 9 8 12 12 C 1.37875 * 120.00314 * 274.92789 * 10 9 8 13 13 N 1.31509 * 119.99913 * 355.42420 * 12 10 9 14 14 Si 1.86807 * 120.00040 * 175.41703 * 12 10 9 15 15 H 1.48494 * 109.47052 * 60.00642 * 14 12 10 16 16 H 1.48500 * 109.47055 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47106 * 300.00083 * 14 12 10 18 18 C 1.53003 * 117.49834 * 80.48431 * 9 8 7 19 19 C 1.53006 * 117.49908 * 149.14426 * 9 8 7 20 20 H 1.08996 * 109.47446 * 59.99401 * 1 2 3 21 21 H 1.09006 * 109.46745 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46835 * 299.99523 * 1 2 3 23 23 H 1.00906 * 110.99703 * 236.05238 * 2 1 3 24 24 H 1.09003 * 109.46812 * 60.00493 * 3 2 1 25 25 H 1.09002 * 109.46926 * 300.00731 * 3 2 1 26 26 H 1.09005 * 109.47336 * 59.99644 * 4 3 2 27 27 H 1.09009 * 109.47164 * 300.00266 * 4 3 2 28 28 H 0.96999 * 119.99637 * 359.97438 * 7 5 4 29 29 H 1.09001 * 109.47395 * 64.78624 * 8 7 5 30 30 H 1.09007 * 109.47080 * 304.78945 * 8 7 5 31 31 H 0.97001 * 119.99960 * 184.99387 * 13 12 10 32 32 H 1.09003 * 117.50034 * 214.99852 * 18 9 8 33 33 H 1.09002 * 117.49971 * 0.02686 * 18 9 8 34 34 H 1.08996 * 117.49810 * 359.97342 * 19 9 8 35 35 H 1.08995 * 117.50078 * 144.97442 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 -0.0006 5 6 4.0649 2.7376 0.0000 6 8 3.3017 3.6801 0.0004 7 7 5.3961 2.9485 -0.0009 8 6 5.9211 4.3161 0.0002 9 6 7.4457 4.2773 -0.1217 10 6 8.1748 3.6523 1.0396 11 1 8.4560 2.6101 1.0030 12 6 8.4882 4.4123 2.1465 13 7 8.2319 5.7021 2.1525 14 14 9.2768 3.6097 3.6377 15 1 10.5716 2.9985 3.2441 16 1 9.5115 4.6354 4.6857 17 1 8.3738 2.5574 4.1690 18 6 8.0378 4.0769 -1.5181 19 6 8.1271 5.4452 -0.8377 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8305 -0.5261 -0.7815 24 1 1.6460 1.8948 0.8901 25 1 1.6458 1.8949 -0.8899 26 1 3.8740 0.8074 -0.8909 27 1 3.8747 0.8071 0.8892 28 1 6.0065 2.1947 -0.0016 29 1 5.6434 4.8111 0.9308 30 1 5.5031 4.8665 -0.8427 31 1 8.5174 6.2499 2.9004 32 1 8.9549 3.4929 -1.5969 33 1 7.3412 3.9731 -2.3501 34 1 7.4892 6.2409 -1.2223 35 1 9.1026 5.7617 -0.4686 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404164885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:36 Heat of formation + Delta-G solvation = -25.018612 kcal Electronic energy + Delta-G solvation = -15503.601197 eV Core-core repulsion = 12922.832670 eV Total energy + Delta-G solvation = -2580.768528 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17376 -36.82605 -36.05339 -33.27692 -31.97163 -30.95730 -26.71160 -25.50708 -24.54616 -22.25108 -21.15431 -19.71457 -19.20820 -16.73142 -16.28147 -16.01301 -15.18016 -14.78962 -14.64205 -14.23618 -14.06810 -13.50041 -13.10059 -12.72408 -12.49829 -11.84665 -11.72534 -11.67859 -11.45799 -11.07428 -10.97707 -10.95090 -10.55037 -10.24796 -9.62131 -9.28673 -9.04968 -8.59596 -8.49733 -8.27199 -8.09158 -6.07997 -4.18178 3.20673 3.26914 3.32996 3.34250 3.71314 4.33646 4.39304 4.98619 5.13377 5.19727 5.24770 5.30558 5.36180 5.50626 5.72309 5.73544 5.99517 6.01735 6.05536 6.33011 6.46734 6.55712 6.69366 6.82975 6.87306 7.11091 7.22007 7.27989 7.38975 7.52444 7.80248 8.29171 8.33085 8.82442 8.88028 9.49163 10.99160 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029574 B = 0.006094 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.555691 B = 4593.292622 C = 5121.532657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.698 5.698 3 C 0.074 3.926 4 C -0.139 4.139 5 C 0.504 3.496 6 O -0.562 6.562 7 N -0.703 5.703 8 C 0.162 3.838 9 C 0.024 3.976 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.211 4.211 19 C -0.142 4.142 20 H 0.021 0.979 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.339 0.661 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.401 0.599 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 -9.050 -4.880 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.328 5.328 3 C -0.056 4.056 4 C -0.180 4.180 5 C 0.289 3.711 6 O -0.442 6.442 7 N -0.352 5.352 8 C 0.039 3.961 9 C 0.023 3.977 10 C -0.539 4.539 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.511 5.511 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.248 4.248 19 C -0.181 4.181 20 H 0.040 0.960 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.156 0.844 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.236 0.764 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.522 -8.251 -4.036 12.530 hybrid contribution 0.667 -0.358 -0.048 0.759 sum -7.855 -8.609 -4.084 12.349 Atomic orbital electron populations 1.22170 0.87741 1.01604 1.00615 1.60416 1.07875 1.14751 1.49801 1.21690 0.93236 0.88559 1.02082 1.21581 0.96399 0.95337 1.04654 1.20461 0.82906 0.90879 0.76839 1.90653 1.57537 1.44669 1.51350 1.46002 1.05869 1.10697 1.72592 1.20993 0.94076 0.80814 1.00193 1.19045 0.89395 0.99315 0.89940 1.20310 1.37947 0.96363 0.99249 0.92227 1.24989 0.95055 0.94861 0.98160 1.69979 1.44907 1.04573 1.31629 0.86682 0.79704 0.79169 0.82578 1.20271 1.21268 1.20105 1.23016 1.02485 1.02236 0.97078 1.22465 1.02346 0.89907 1.03336 0.96020 0.91534 0.91614 0.84420 0.90147 0.94429 0.89460 0.88211 0.76444 0.91495 0.94266 0.92798 0.90386 0.91780 0.91854 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.06 0.64 0.91 16 2 N -0.70 -7.63 6.86 -121.13 -0.83 -8.46 16 3 C 0.07 0.97 4.97 -3.82 -0.02 0.95 16 4 C -0.14 -1.85 5.96 -27.89 -0.17 -2.02 16 5 C 0.50 9.21 7.83 -10.98 -0.09 9.12 16 6 O -0.56 -12.35 15.98 5.56 0.09 -12.26 16 7 N -0.70 -13.47 5.48 -60.30 -0.33 -13.80 16 8 C 0.16 3.68 5.50 -4.05 -0.02 3.66 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C -0.50 -12.82 8.59 -34.44 -0.30 -13.11 16 11 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 12 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 13 N -0.88 -24.25 12.65 55.43 0.70 -23.55 16 14 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 19 C -0.14 -3.27 9.14 -26.69 -0.24 -3.51 16 20 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.34 3.09 8.82 -39.29 -0.35 2.74 16 24 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 25 H 0.04 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.40 6.98 8.33 -40.82 -0.34 6.64 16 29 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.04 0.88 8.09 -51.92 -0.42 0.46 16 31 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -29.36 300.38 -7.37 -36.73 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.72 Total: 7.82 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.78 Total: -6.48 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.46 Total: -45.81 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.36 -7.37 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404164885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.710 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds