Wall clock time and date at job start Mon Mar 30 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36932 * 120.00431 * 2 1 4 4 H 1.08001 * 119.99978 * 202.82285 * 3 2 1 5 5 C 1.38808 * 119.99936 * 22.83137 * 3 2 1 6 6 N 1.31623 * 120.00217 * 13.94412 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 193.94941 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3 10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3 11 11 C 1.46505 * 119.99802 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.63261 * 180.39451 * 11 2 1 13 13 C 1.53067 * 109.63510 * 59.99576 * 11 2 1 14 14 C 1.51790 * 110.74476 * 155.38547 * 13 11 2 15 15 C 1.51775 * 113.80939 * 66.80773 * 14 13 11 16 16 C 1.52985 * 110.88555 * 292.99744 * 15 14 13 17 17 N 1.47192 * 108.66353 * 86.46617 * 16 15 14 18 18 C 1.46504 * 119.78518 * 108.04463 * 17 16 15 19 19 C 1.33367 * 120.42905 * 288.03966 * 17 16 15 20 20 O 1.21278 * 119.89103 * 180.28445 * 19 17 16 21 21 H 1.09003 * 109.46691 * 275.22567 * 1 2 3 22 22 H 1.08999 * 109.46629 * 35.21656 * 1 2 3 23 23 H 1.08993 * 109.47549 * 155.21740 * 1 2 3 24 24 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 25 25 H 1.09005 * 109.21930 * 275.71431 * 13 11 2 26 26 H 1.09001 * 109.21780 * 35.05347 * 13 11 2 27 27 H 1.08997 * 108.61356 * 187.92963 * 14 13 11 28 28 H 1.09000 * 108.61249 * 305.69007 * 14 13 11 29 29 H 1.09002 * 109.19244 * 53.36307 * 15 14 13 30 30 H 1.08999 * 109.19044 * 172.63304 * 15 14 13 31 31 H 1.08997 * 109.60307 * 206.22510 * 16 15 14 32 32 H 1.09005 * 109.60123 * 326.71430 * 16 15 14 33 33 H 1.09002 * 109.47169 * 89.99532 * 18 17 16 34 34 H 1.08997 * 109.47225 * 210.00128 * 18 17 16 35 35 H 1.09008 * 109.46967 * 330.00221 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1663 1.2223 -0.3628 5 6 1.5373 2.3409 0.4664 6 7 0.4187 2.2605 1.1554 7 14 2.3007 4.0094 0.1163 8 1 3.5468 3.8284 -0.6707 9 1 1.3425 4.8397 -0.6569 10 1 2.6198 4.6868 1.3988 11 6 2.1975 -1.2688 -0.0006 12 1 3.2696 -1.0727 0.0066 13 6 1.8303 -2.0741 -1.2494 14 6 2.9402 -3.0453 -1.6085 15 6 3.1374 -4.1538 -0.5908 16 6 3.6594 -3.5923 0.7331 17 7 2.5111 -3.1669 1.5498 18 6 2.1297 -3.9454 2.7307 19 6 1.8157 -2.0771 1.2217 20 8 0.8745 -1.7325 1.9044 21 1 -0.3633 0.0936 1.0234 22 1 -0.3632 0.8396 -0.5926 23 1 -0.3634 -0.9329 -0.4307 24 1 -0.0090 3.0676 1.4817 25 1 0.9129 -2.6316 -1.0600 26 1 1.6682 -1.3902 -2.0825 27 1 2.7094 -3.4960 -2.5737 28 1 3.8727 -2.4887 -1.7018 29 1 2.1848 -4.6544 -0.4171 30 1 3.8546 -4.8756 -0.9816 31 1 4.2189 -4.3637 1.2623 32 1 4.3063 -2.7370 0.5378 33 1 2.6601 -3.5650 3.6036 34 1 1.0552 -3.8582 2.8919 35 1 2.3900 -4.9925 2.5752 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601971845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:24 Heat of formation + Delta-G solvation = -7.516971 kcal Electronic energy + Delta-G solvation = -16840.915329 eV Core-core repulsion = 14260.905729 eV Total energy + Delta-G solvation = -2580.009599 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74247 -36.07786 -35.62967 -33.38947 -31.23710 -29.16224 -27.77896 -25.78995 -24.82106 -23.48526 -21.48114 -20.12605 -18.02044 -16.96840 -16.33820 -15.82185 -14.85968 -14.68182 -13.89701 -13.77677 -13.35272 -13.34209 -12.74582 -12.69439 -12.28690 -11.96860 -11.63145 -11.40360 -11.11034 -10.90987 -10.79232 -10.54035 -10.49485 -10.28169 -10.20599 -9.81664 -9.79791 -8.89370 -8.39863 -8.16308 -6.64418 -5.62783 -3.11920 3.40097 3.47046 3.50115 3.55968 3.57914 4.52948 4.91718 5.00239 5.06613 5.30855 5.46904 5.52297 5.56265 5.67184 5.76059 5.84733 5.88916 5.95833 6.03316 6.13047 6.23057 6.35079 6.39598 6.65355 6.83766 6.97736 7.03389 7.53116 7.84845 7.97425 8.16518 8.45177 9.09156 9.30211 9.92982 10.42789 11.39162 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034957 B = 0.008892 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.797194 B = 3148.146658 C = 3425.069905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.573 5.573 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.892 5.892 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.166 3.834 12 H 0.082 0.918 13 C -0.125 4.125 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.115 3.885 17 N -0.628 5.628 18 C 0.085 3.915 19 C 0.488 3.512 20 O -0.524 6.524 21 H 0.045 0.955 22 H 0.034 0.966 23 H -0.005 1.005 24 H 0.252 0.748 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -13.224 -3.367 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.293 5.293 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.536 5.536 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.218 1.218 11 C 0.052 3.948 12 H 0.100 0.900 13 C -0.165 4.165 14 C -0.154 4.154 15 C -0.175 4.175 16 C -0.009 4.009 17 N -0.365 5.365 18 C -0.058 4.058 19 C 0.274 3.726 20 O -0.398 6.398 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.013 0.987 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.787 -12.824 -2.927 14.370 hybrid contribution 0.406 0.794 0.084 0.896 sum 6.192 -12.030 -2.843 13.825 Atomic orbital electron populations 1.20743 0.81843 0.94493 1.00235 1.43898 1.02293 0.99119 1.83957 1.19246 0.98722 0.85031 1.36400 0.91237 1.25121 0.97994 0.98585 0.97685 1.70160 1.19509 1.26920 1.36974 0.86197 0.78536 0.84364 0.77482 1.20244 1.21545 1.21768 1.20627 0.97286 0.87025 0.89817 0.89973 1.21824 0.97730 0.97714 0.99268 1.21120 0.99670 0.96484 0.98162 1.21801 1.01750 0.98329 0.95653 1.21699 0.88128 0.99802 0.91250 1.48210 1.32173 1.27986 1.28111 1.21517 1.01828 0.94394 0.88093 1.22796 0.82172 0.79492 0.88156 1.90660 1.28666 1.67544 1.52896 0.93710 0.94747 0.98687 0.93789 0.92894 0.90415 0.92405 0.91976 0.91622 0.91344 0.90552 0.90715 0.93654 0.91064 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.68 7.41 59.85 0.44 5.12 16 2 N -0.57 -15.30 2.66 -174.36 -0.46 -15.76 16 3 C -0.26 -7.52 9.58 -15.06 -0.14 -7.66 16 4 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 5 C 0.01 0.17 5.08 -17.43 -0.09 0.08 16 6 N -0.89 -27.56 10.75 55.49 0.60 -26.96 16 7 Si 0.90 22.32 29.58 -169.99 -5.03 17.29 16 8 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 C 0.17 3.57 2.29 -68.69 -0.16 3.41 16 12 H 0.08 1.69 6.52 -51.93 -0.34 1.36 16 13 C -0.13 -2.19 4.46 -27.31 -0.12 -2.31 16 14 C -0.12 -1.50 5.27 -27.97 -0.15 -1.64 16 15 C -0.14 -1.54 5.73 -27.36 -0.16 -1.70 16 16 C 0.11 1.41 5.88 -3.67 -0.02 1.39 16 17 N -0.63 -10.47 2.86 -181.11 -0.52 -10.98 16 18 C 0.09 1.22 10.35 59.85 0.62 1.84 16 19 C 0.49 10.64 6.65 -11.26 -0.07 10.57 16 20 O -0.52 -13.91 14.09 5.56 0.08 -13.83 16 21 H 0.04 1.38 6.59 -51.93 -0.34 1.04 16 22 H 0.03 0.97 7.36 -51.93 -0.38 0.59 16 23 H -0.01 -0.14 7.03 -51.93 -0.37 -0.50 16 24 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.05 0.96 7.47 -51.93 -0.39 0.57 16 26 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 29 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 32 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.16 7.38 -51.93 -0.38 0.77 16 35 H 0.06 0.63 8.03 -51.92 -0.42 0.21 16 LS Contribution 273.56 15.07 4.12 4.12 Total: -1.00 -34.35 273.56 -6.50 -40.85 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.44 Total: -3.84 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 0.15 Total: 9.11 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.38 Total: -53.71 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -34.35 -6.50 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601971845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.335 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds