Wall clock time and date at job start Mon Mar 30 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47421 * 2 1 4 4 C 1.53008 * 109.46941 * 119.99849 * 2 1 3 5 5 H 1.09005 * 108.76827 * 304.49522 * 4 2 1 6 6 C 1.50473 * 108.87520 * 63.00325 * 4 2 1 7 7 C 1.54238 * 108.68385 * 214.82656 * 6 4 2 8 8 C 1.45389 * 112.49758 * 280.32497 * 7 6 4 9 9 C 1.54238 * 112.55712 * 61.62226 * 8 7 6 10 10 C 1.50473 * 108.52038 * 280.13072 * 9 8 7 11 11 C 1.54063 * 108.87474 * 185.98260 * 4 2 1 12 12 O 1.42901 * 108.81563 * 76.75748 * 11 4 2 13 13 C 1.50697 * 108.81559 * 318.36119 * 11 4 2 14 14 H 1.07998 * 119.99933 * 355.38415 * 13 11 4 15 15 C 1.37880 * 120.00147 * 175.37964 * 13 11 4 16 16 N 1.31516 * 119.99945 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00158 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47198 * 60.00134 * 17 15 13 19 19 H 1.48500 * 109.47111 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47057 * 300.00187 * 17 15 13 21 21 H 1.08997 * 109.47526 * 173.86570 * 1 2 3 22 22 H 1.08997 * 109.47208 * 293.86786 * 1 2 3 23 23 H 1.09007 * 109.46823 * 53.86386 * 1 2 3 24 24 H 1.08995 * 109.47205 * 239.99532 * 2 1 3 25 25 H 1.08996 * 109.47728 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47305 * 300.00053 * 3 2 1 27 27 H 1.09005 * 109.47338 * 59.99487 * 3 2 1 28 28 H 1.08999 * 109.63289 * 334.64328 * 6 4 2 29 29 H 1.09007 * 109.62439 * 95.02309 * 6 4 2 30 30 H 1.09004 * 108.89660 * 40.87283 * 7 6 4 31 31 H 1.08999 * 108.89730 * 159.36017 * 7 6 4 32 32 H 1.08999 * 108.72011 * 300.89186 * 8 7 6 33 33 H 1.09003 * 108.91187 * 182.48637 * 8 7 6 34 34 H 1.09001 * 109.62856 * 160.42208 * 9 8 7 35 35 H 1.09002 * 109.78945 * 39.93643 * 9 8 7 36 36 H 1.08998 * 108.87409 * 333.37457 * 10 9 8 37 37 H 1.09003 * 108.79642 * 214.87775 * 10 9 8 38 38 H 0.96703 * 113.99984 * 179.97438 * 12 11 4 39 39 H 0.96993 * 120.00136 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6057 -0.2473 2.1297 6 6 1.5928 -2.1572 1.1991 7 6 1.2893 -2.6307 2.6352 8 6 2.4932 -2.9791 3.3722 9 6 3.4510 -1.7820 3.5408 10 6 4.2258 -1.6062 2.2628 11 6 3.5730 -0.5830 1.3138 12 8 3.8985 0.7334 1.7644 13 6 4.1369 -0.7755 -0.0704 14 1 3.4840 -1.0473 -0.8865 15 6 5.4865 -0.6044 -0.2949 16 7 6.2818 -0.2738 0.6990 17 14 6.1855 -0.8423 -2.0108 18 1 5.5422 0.1164 -2.9446 19 1 7.6508 -0.6025 -1.9860 20 1 5.9192 -2.2307 -2.4656 21 1 -0.3634 -1.0217 -0.1098 22 1 -0.3633 0.4158 0.9397 23 1 -0.3633 0.6061 -0.8300 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 0.6936 -2.2396 0.5886 29 1 2.3841 -2.7722 0.7702 30 1 0.7723 -1.8327 3.1682 31 1 0.6365 -3.5023 2.5890 32 1 3.0128 -3.7744 2.8376 33 1 2.2098 -3.3461 4.3587 34 1 4.1399 -1.9772 4.3627 35 1 2.8788 -0.8781 3.7494 36 1 4.2900 -2.5681 1.7542 37 1 5.2331 -1.2686 2.5065 38 1 4.8482 0.9021 1.8329 39 1 7.2312 -0.1538 0.5412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606268999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:47 Heat of formation + Delta-G solvation = -77.873850 kcal Electronic energy + Delta-G solvation = -17754.887536 eV Core-core repulsion = 15275.367377 eV Total energy + Delta-G solvation = -2479.520159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00065 -35.07061 -34.50092 -31.91235 -30.19201 -29.27450 -26.66294 -25.30194 -23.53137 -22.27666 -19.85317 -19.63100 -18.17358 -16.30873 -15.26176 -15.05105 -14.30368 -13.74800 -13.68012 -13.21562 -12.95381 -12.71376 -12.34230 -11.82357 -11.55394 -11.36292 -11.18992 -10.91090 -10.86760 -10.81795 -10.58513 -10.30022 -10.18905 -10.12590 -9.99233 -9.62102 -9.48451 -9.26922 -9.06299 -8.71991 -8.35906 -7.72511 -6.06766 -4.12172 3.28825 3.33970 3.37267 4.39480 5.16205 5.36307 5.42454 5.61231 5.79362 5.85430 5.89953 6.07960 6.20592 6.29826 6.31862 6.38672 6.45382 6.52635 6.61501 6.67494 6.68744 6.75971 6.84848 6.90925 6.98831 7.06453 7.13774 7.19527 7.22593 7.42580 7.47756 7.66399 7.79919 7.86597 8.09000 8.37333 8.88381 9.53720 9.75175 10.97578 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.013129 C = 0.010475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.686151 B = 2132.173991 C = 2672.383754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.054 4.054 5 H 0.048 0.952 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.128 4.128 11 C 0.262 3.738 12 O -0.591 6.591 13 C -0.524 4.524 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.279 1.279 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.019 0.981 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.377 0.623 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -2.334 1.967 7.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.072 4.072 5 H 0.066 0.934 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.153 4.153 10 C -0.167 4.167 11 C 0.222 3.778 12 O -0.401 6.401 13 C -0.562 4.562 14 H 0.081 0.919 15 C -0.133 4.133 16 N -0.544 5.544 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.229 0.771 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.070 -2.238 2.015 7.685 hybrid contribution 1.107 -0.300 -0.946 1.487 sum -5.963 -2.539 1.069 6.568 Atomic orbital electron populations 1.22012 0.97989 1.00243 1.00376 1.21111 0.92152 0.97402 0.99252 1.21902 1.05372 0.94450 0.97670 1.20742 0.96556 0.93604 0.96339 0.93364 1.21420 1.00654 0.97568 0.95206 1.20417 0.97506 0.99972 0.97026 1.20455 0.97095 0.98924 0.98675 1.21411 0.97712 0.97139 0.99051 1.21933 1.00506 1.00416 0.93817 1.18987 0.88185 0.79925 0.90677 1.86145 1.30431 1.33870 1.89657 1.21923 0.92761 1.46033 0.95496 0.91896 1.24968 0.97020 0.94603 0.96725 1.69554 1.04932 1.49154 1.30714 0.86685 0.77792 0.78616 0.85060 1.20255 1.21448 1.20429 0.93427 0.93712 0.93958 0.90966 0.88219 0.96207 0.94690 0.92577 0.91111 0.93025 0.93685 0.92740 0.94024 0.94046 0.92301 0.93593 0.90639 0.77126 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.84 37.16 0.33 -2.13 16 2 C -0.08 -1.60 1.89 -90.62 -0.17 -1.78 16 3 C -0.14 -2.86 8.01 37.16 0.30 -2.56 16 4 C -0.05 -1.10 0.83 -91.32 -0.08 -1.18 16 5 H 0.05 1.02 6.65 -51.93 -0.35 0.68 16 6 C -0.11 -2.03 4.91 -27.35 -0.13 -2.17 16 7 C -0.11 -1.83 5.26 -29.67 -0.16 -1.99 16 8 C -0.11 -1.93 5.25 -29.67 -0.16 -2.08 16 9 C -0.12 -2.24 5.60 -27.35 -0.15 -2.39 16 10 C -0.13 -2.91 3.80 -27.44 -0.10 -3.01 16 11 C 0.26 6.09 0.19 -90.66 -0.02 6.08 16 12 O -0.59 -14.66 10.19 -35.23 -0.36 -15.02 16 13 C -0.52 -13.25 5.86 -34.44 -0.20 -13.45 16 14 H 0.06 1.60 5.65 -52.49 -0.30 1.31 16 15 C 0.07 1.74 5.21 -17.82 -0.09 1.64 16 16 N -0.90 -23.68 9.75 55.43 0.54 -23.14 16 17 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 24 H 0.07 1.53 6.03 -51.93 -0.31 1.22 16 25 H 0.10 2.39 4.90 -51.93 -0.25 2.14 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.94 5.70 -51.93 -0.30 0.64 16 29 H 0.07 1.42 6.79 -51.92 -0.35 1.06 16 30 H 0.05 0.84 7.49 -51.93 -0.39 0.45 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.93 7.47 -51.93 -0.39 0.55 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.19 7.00 -51.93 -0.36 0.82 16 36 H 0.05 1.07 6.47 -51.93 -0.34 0.74 16 37 H 0.08 1.89 6.56 -51.93 -0.34 1.55 16 38 H 0.38 9.80 6.73 45.56 0.31 10.11 16 39 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -25.14 275.51 -7.11 -32.25 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -5.79 Total: 11.16 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -0.64 Total: -25.02 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.54 Total: -23.14 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.36 Total: -15.02 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.14 -7.11 -32.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.621 kcal (2) G-P(sol) polarization free energy of solvation -25.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds