Wall clock time and date at job start Mon Mar 30 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47421 * 2 1 4 4 C 1.53008 * 109.46941 * 119.99849 * 2 1 3 5 5 H 1.09005 * 108.76827 * 304.49522 * 4 2 1 6 6 C 1.50473 * 108.87520 * 63.00325 * 4 2 1 7 7 C 1.54238 * 108.68385 * 214.82656 * 6 4 2 8 8 C 1.45389 * 112.49758 * 280.32497 * 7 6 4 9 9 C 1.54238 * 112.55712 * 61.62226 * 8 7 6 10 10 C 1.50473 * 108.52038 * 280.13072 * 9 8 7 11 11 C 1.54063 * 108.87474 * 185.98260 * 4 2 1 12 12 O 1.42901 * 108.81563 * 76.75748 * 11 4 2 13 13 C 1.50697 * 108.81559 * 318.36119 * 11 4 2 14 14 H 1.07998 * 119.99933 * 355.38415 * 13 11 4 15 15 C 1.37880 * 120.00147 * 175.37964 * 13 11 4 16 16 N 1.31516 * 119.99945 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00158 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47198 * 60.00134 * 17 15 13 19 19 H 1.48500 * 109.47111 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47057 * 300.00187 * 17 15 13 21 21 H 1.08997 * 109.47526 * 173.86570 * 1 2 3 22 22 H 1.08997 * 109.47208 * 293.86786 * 1 2 3 23 23 H 1.09007 * 109.46823 * 53.86386 * 1 2 3 24 24 H 1.08995 * 109.47205 * 239.99532 * 2 1 3 25 25 H 1.08996 * 109.47728 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47305 * 300.00053 * 3 2 1 27 27 H 1.09005 * 109.47338 * 59.99487 * 3 2 1 28 28 H 1.08999 * 109.63289 * 334.64328 * 6 4 2 29 29 H 1.09007 * 109.62439 * 95.02309 * 6 4 2 30 30 H 1.09004 * 108.89660 * 40.87283 * 7 6 4 31 31 H 1.08999 * 108.89730 * 159.36017 * 7 6 4 32 32 H 1.08999 * 108.72011 * 300.89186 * 8 7 6 33 33 H 1.09003 * 108.91187 * 182.48637 * 8 7 6 34 34 H 1.09001 * 109.62856 * 160.42208 * 9 8 7 35 35 H 1.09002 * 109.78945 * 39.93643 * 9 8 7 36 36 H 1.08998 * 108.87409 * 333.37457 * 10 9 8 37 37 H 1.09003 * 108.79642 * 214.87775 * 10 9 8 38 38 H 0.96703 * 113.99984 * 179.97438 * 12 11 4 39 39 H 0.96993 * 120.00136 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6057 -0.2473 2.1297 6 6 1.5928 -2.1572 1.1991 7 6 1.2893 -2.6307 2.6352 8 6 2.4932 -2.9791 3.3722 9 6 3.4510 -1.7820 3.5408 10 6 4.2258 -1.6062 2.2628 11 6 3.5730 -0.5830 1.3138 12 8 3.8985 0.7334 1.7644 13 6 4.1369 -0.7755 -0.0704 14 1 3.4840 -1.0473 -0.8865 15 6 5.4865 -0.6044 -0.2949 16 7 6.2818 -0.2738 0.6990 17 14 6.1855 -0.8423 -2.0108 18 1 5.5422 0.1164 -2.9446 19 1 7.6508 -0.6025 -1.9860 20 1 5.9192 -2.2307 -2.4656 21 1 -0.3634 -1.0217 -0.1098 22 1 -0.3633 0.4158 0.9397 23 1 -0.3633 0.6061 -0.8300 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 0.6936 -2.2396 0.5886 29 1 2.3841 -2.7722 0.7702 30 1 0.7723 -1.8327 3.1682 31 1 0.6365 -3.5023 2.5890 32 1 3.0128 -3.7744 2.8376 33 1 2.2098 -3.3461 4.3587 34 1 4.1399 -1.9772 4.3627 35 1 2.8788 -0.8781 3.7494 36 1 4.2900 -2.5681 1.7542 37 1 5.2331 -1.2686 2.5065 38 1 4.8482 0.9021 1.8329 39 1 7.2312 -0.1538 0.5412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:46 Heat of formation + Delta-G solvation = -91.325393 kcal Electronic energy + Delta-G solvation = -17755.470839 eV Core-core repulsion = 15275.367377 eV Total energy + Delta-G solvation = -2480.103462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64677 -36.69162 -36.17629 -33.91195 -31.80590 -30.91736 -28.26901 -27.06759 -25.13300 -23.97539 -21.43389 -21.12547 -19.94917 -18.19214 -17.06098 -16.74267 -15.95589 -15.48160 -15.30893 -14.84530 -14.42643 -14.28750 -13.95177 -13.48595 -13.26778 -12.90104 -12.87844 -12.61823 -12.61317 -12.53990 -12.27421 -12.02408 -11.87564 -11.81432 -11.41908 -11.22022 -11.15346 -10.89841 -10.67154 -10.54744 -10.23828 -9.63382 -8.04458 -6.14579 1.41272 1.43465 1.48801 2.45410 3.18018 3.88690 4.02975 4.13275 4.25254 4.38285 4.44321 4.55971 4.72568 4.76688 4.84783 4.95318 4.96472 5.03334 5.08417 5.16528 5.21410 5.21759 5.25015 5.35384 5.45835 5.54954 5.57482 5.63970 5.65825 5.71502 5.77504 5.81009 6.00285 6.02702 6.19959 6.45345 6.90033 7.52739 7.72136 8.97314 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.013129 C = 0.010475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.686151 B = 2132.173991 C = 2672.383754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.131 4.131 4 C -0.049 4.049 5 H 0.043 0.957 6 C -0.109 4.109 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.112 4.112 10 C -0.118 4.118 11 C 0.253 3.747 12 O -0.596 6.596 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.024 3.976 16 N -0.919 5.919 17 Si 0.940 3.060 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.276 1.276 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.368 0.632 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -3.219 2.023 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.188 4.188 4 C -0.067 4.067 5 H 0.061 0.939 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.150 4.150 10 C -0.156 4.156 11 C 0.214 3.786 12 O -0.405 6.405 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.174 4.174 16 N -0.562 5.562 17 Si 0.767 3.233 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.201 1.201 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.218 0.782 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.065 -3.129 2.069 9.810 hybrid contribution 1.744 0.011 -0.971 1.997 sum -7.320 -3.119 1.097 8.032 Atomic orbital electron populations 1.21908 0.94803 1.01722 1.01320 1.21100 0.94838 0.96108 0.98083 1.21786 1.02963 0.95733 0.98363 1.20717 0.94148 0.95415 0.96451 0.93854 1.21407 1.00674 0.95410 0.97151 1.20405 0.97666 1.01352 0.95288 1.20413 0.96618 0.97299 1.00391 1.21343 0.98073 0.98245 0.97294 1.21767 0.99411 0.99171 0.95300 1.19221 0.90289 0.79272 0.89844 1.86158 1.29543 1.35007 1.89763 1.22150 0.92789 1.45269 0.96406 0.92414 1.25555 0.97565 0.94967 0.99299 1.69663 1.04781 1.49934 1.31779 0.85898 0.77014 0.78399 0.81955 1.20333 1.21514 1.20148 0.91760 0.93072 0.92669 0.92643 0.91813 0.94661 0.94761 0.90530 0.93273 0.92460 0.90731 0.93218 0.91202 0.93252 0.93112 0.95037 0.93754 0.78233 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.84 71.98 0.64 -3.56 16 2 C -0.08 -3.18 1.89 -10.79 -0.02 -3.20 16 3 C -0.13 -5.42 8.01 71.98 0.58 -4.84 16 4 C -0.05 -1.95 0.83 -11.25 -0.01 -1.96 16 5 H 0.04 1.77 6.65 -2.38 -0.02 1.76 16 6 C -0.11 -3.76 4.91 30.20 0.15 -3.61 16 7 C -0.11 -3.22 5.26 28.69 0.15 -3.07 16 8 C -0.11 -3.42 5.25 28.69 0.15 -3.27 16 9 C -0.11 -4.24 5.60 30.20 0.17 -4.07 16 10 C -0.12 -5.43 3.80 30.14 0.11 -5.32 16 11 C 0.25 11.92 0.19 -10.82 0.00 11.92 16 12 O -0.60 -30.36 10.19 -148.98 -1.52 -31.87 16 13 C -0.53 -27.14 5.86 25.60 0.15 -26.99 16 14 H 0.06 2.98 5.65 -2.91 -0.02 2.96 16 15 C 0.02 1.27 5.21 84.66 0.44 1.71 16 16 N -0.92 -49.66 9.75 21.45 0.21 -49.45 16 17 Si 0.94 42.89 29.54 68.60 2.03 44.91 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H 0.06 1.70 6.33 -2.39 -0.02 1.69 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.06 2.31 6.03 -2.39 -0.01 2.30 16 25 H 0.06 3.11 4.90 -2.39 -0.01 3.10 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.08 2.31 5.70 -2.39 -0.01 2.30 16 29 H 0.05 1.91 6.79 -2.38 -0.02 1.89 16 30 H 0.06 1.65 7.49 -2.38 -0.02 1.63 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.60 7.47 -2.39 -0.02 1.58 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 2.00 7.00 -2.39 -0.02 1.98 16 36 H 0.03 1.49 6.47 -2.39 -0.02 1.48 16 37 H 0.04 2.28 6.56 -2.39 -0.02 2.27 16 38 H 0.37 19.91 6.73 -74.05 -0.50 19.42 16 39 H 0.26 13.76 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -54.23 275.51 3.75 -50.48 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.53 Total: 32.20 kcal Atomic # 6 Polarization: -48.77 SS G_CDS: 2.51 Total: -46.26 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.21 Total: -49.45 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.52 Total: -31.87 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -54.23 3.75 -50.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.846 kcal (2) G-P(sol) polarization free energy of solvation -54.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds