Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 C 1.52997 * 117.50008 * 243.62025 * 4 3 2 6 6 C 1.52997 * 117.49904 * 174.99670 * 4 3 2 7 7 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 8 8 O 1.21593 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.34780 * 120.00532 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00367 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47458 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00195 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99793 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00027 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.46805 * 60.00240 * 16 14 12 18 18 H 1.48500 * 109.46745 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47013 * 300.00390 * 16 14 12 20 20 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 23 23 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 24 24 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 25 25 H 1.09004 * 115.55300 * 29.33271 * 4 3 2 26 26 H 1.08991 * 117.49960 * 0.02562 * 5 4 3 27 27 H 1.09003 * 117.49554 * 145.02367 * 5 4 3 28 28 H 1.08997 * 117.50442 * 214.98110 * 6 4 3 29 29 H 1.09001 * 117.49711 * 0.02562 * 6 4 3 30 30 H 0.97000 * 119.99501 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47298 * 300.00557 * 10 9 7 32 32 H 1.09000 * 109.47160 * 60.00094 * 10 9 7 33 33 H 1.09004 * 109.47275 * 300.00478 * 11 10 9 34 34 H 1.09000 * 109.47397 * 60.00196 * 11 10 9 35 35 H 0.97006 * 120.00061 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 1.8017 3.0145 1.9076 6 6 3.3101 2.9589 1.6579 7 6 2.1388 -1.1672 -0.0005 8 8 3.3548 -1.1673 -0.0010 9 7 1.4650 -2.3344 -0.0005 10 6 2.1974 -3.6032 -0.0017 11 6 1.2032 -4.7660 -0.0021 12 6 1.9566 -6.0712 -0.0026 13 1 3.0366 -6.0713 -0.0022 14 6 1.2672 -7.2652 -0.0025 15 7 -0.0479 -7.2652 -0.0024 16 14 2.2012 -8.8830 -0.0039 17 1 3.0558 -8.9621 1.2079 18 1 1.2361 -10.0116 -0.0041 19 1 3.0540 -8.9612 -1.2170 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 3.1500 1.1383 -0.5139 24 1 1.6085 2.0284 -0.5138 25 1 2.5440 0.9052 2.1715 26 1 1.1915 3.5577 1.1861 27 1 1.4645 3.0674 2.9428 28 1 3.9654 2.9754 2.5288 29 1 3.6923 3.4660 0.7719 30 1 0.4949 -2.3344 -0.0005 31 1 2.8235 -3.6605 -0.8921 32 1 2.8247 -3.6613 0.8878 33 1 0.5768 -4.7089 0.8882 34 1 0.5762 -4.7078 -0.8918 35 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612154822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -11.196463 kcal Electronic energy + Delta-G solvation = -15338.758647 eV Core-core repulsion = 12758.589493 eV Total energy + Delta-G solvation = -2580.169154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.85501 -37.52115 -34.98149 -34.74289 -32.76577 -29.70524 -27.92743 -26.02096 -24.25176 -22.51272 -21.27700 -20.74368 -19.54242 -17.67989 -16.58106 -16.19493 -15.66678 -15.07408 -14.50883 -14.29049 -13.67118 -13.55275 -13.49859 -12.70679 -12.61643 -12.28291 -12.24165 -11.70871 -11.61955 -11.14279 -10.99677 -10.63144 -10.57610 -10.28347 -10.06001 -9.81884 -9.50981 -9.24792 -8.69558 -8.43797 -8.16571 -6.07168 -4.09728 2.93802 3.33120 3.36609 3.40414 3.59523 3.71573 4.31337 4.47832 4.66557 4.80553 4.88794 5.06307 5.21567 5.29869 5.40036 5.47718 5.56035 5.67622 5.73875 5.75734 5.95754 6.12836 6.30520 6.43156 6.67659 6.80478 7.04610 7.20334 7.58112 7.65718 7.91988 8.27586 8.41584 8.94808 9.02905 9.54848 11.04523 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060068 B = 0.004451 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.023160 B = 6289.085227 C = 6525.442283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.637 5.637 3 C 0.166 3.834 4 C -0.163 4.163 5 C -0.183 4.183 6 C -0.176 4.176 7 C 0.699 3.301 8 O -0.595 6.595 9 N -0.738 5.738 10 C 0.139 3.861 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.053 0.947 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.393 0.607 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 18.359 1.165 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.375 5.375 3 C 0.042 3.958 4 C -0.183 4.183 5 C -0.220 4.220 6 C -0.214 4.214 7 C 0.400 3.600 8 O -0.473 6.473 9 N -0.393 5.393 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.095 18.185 1.148 18.221 hybrid contribution -0.196 -0.910 0.123 0.939 sum -0.291 17.275 1.271 17.324 Atomic orbital electron populations 1.21692 0.80053 1.02759 1.01654 1.46997 1.06169 1.04958 1.79415 1.20813 0.97540 0.83645 0.93761 1.22828 1.04468 0.91798 0.99163 1.23040 0.95615 1.01148 1.02186 1.22903 0.93538 1.01573 1.03344 1.16021 0.85434 0.80480 0.78045 1.90881 1.11656 1.86317 1.58472 1.45686 1.09964 1.05328 1.78346 1.21591 0.95672 0.80516 1.00632 1.19315 0.94253 0.91093 0.97749 1.21024 0.93251 0.90377 1.51322 0.92259 1.24992 0.94890 0.99379 0.95001 1.69949 1.06091 1.26943 1.50428 0.86566 0.79509 0.82633 0.78794 1.20105 1.21263 1.20103 0.92840 0.91236 0.91265 0.89467 0.90834 0.87663 0.88905 0.89112 0.88871 0.88736 0.77214 0.92807 0.92806 0.96014 0.96015 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.25 59.85 0.61 1.46 16 2 N -0.64 -8.87 2.87 -187.34 -0.54 -9.41 16 3 C 0.17 1.99 5.73 -4.04 -0.02 1.97 16 4 C -0.16 -1.86 6.01 -90.63 -0.54 -2.41 16 5 C -0.18 -1.61 10.18 -26.73 -0.27 -1.88 16 6 C -0.18 -1.66 10.25 -26.73 -0.27 -1.93 16 7 C 0.70 12.97 8.28 -86.92 -0.72 12.25 16 8 O -0.59 -13.26 15.92 5.28 0.08 -13.17 16 9 N -0.74 -13.77 5.42 -65.23 -0.35 -14.12 16 10 C 0.14 3.08 5.61 -4.05 -0.02 3.05 16 11 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 12 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 22 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 23 H 0.09 1.20 7.42 -51.93 -0.39 0.81 16 24 H 0.07 0.67 7.63 -51.93 -0.40 0.28 16 25 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 6.39 6.20 -40.82 -0.25 6.14 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -32.27 297.19 -7.95 -40.21 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.54 Total: 1.75 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.80 Total: -0.69 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.16 Total: -49.10 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.27 -7.95 -40.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612154822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.018 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds