Wall clock time and date at job start Mon Mar 30 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 C 1.52997 * 117.50008 * 243.62025 * 4 3 2 6 6 C 1.52997 * 117.49904 * 174.99670 * 4 3 2 7 7 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 8 8 O 1.21593 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.34780 * 120.00532 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00367 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47458 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00195 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99793 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00027 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.46805 * 60.00240 * 16 14 12 18 18 H 1.48500 * 109.46745 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47013 * 300.00390 * 16 14 12 20 20 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 23 23 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 24 24 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 25 25 H 1.09004 * 115.55300 * 29.33271 * 4 3 2 26 26 H 1.08991 * 117.49960 * 0.02562 * 5 4 3 27 27 H 1.09003 * 117.49554 * 145.02367 * 5 4 3 28 28 H 1.08997 * 117.50442 * 214.98110 * 6 4 3 29 29 H 1.09001 * 117.49711 * 0.02562 * 6 4 3 30 30 H 0.97000 * 119.99501 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47298 * 300.00557 * 10 9 7 32 32 H 1.09000 * 109.47160 * 60.00094 * 10 9 7 33 33 H 1.09004 * 109.47275 * 300.00478 * 11 10 9 34 34 H 1.09000 * 109.47397 * 60.00196 * 11 10 9 35 35 H 0.97006 * 120.00061 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 1.8017 3.0145 1.9076 6 6 3.3101 2.9589 1.6579 7 6 2.1388 -1.1672 -0.0005 8 8 3.3548 -1.1673 -0.0010 9 7 1.4650 -2.3344 -0.0005 10 6 2.1974 -3.6032 -0.0017 11 6 1.2032 -4.7660 -0.0021 12 6 1.9566 -6.0712 -0.0026 13 1 3.0366 -6.0713 -0.0022 14 6 1.2672 -7.2652 -0.0025 15 7 -0.0479 -7.2652 -0.0024 16 14 2.2012 -8.8830 -0.0039 17 1 3.0558 -8.9621 1.2079 18 1 1.2361 -10.0116 -0.0041 19 1 3.0540 -8.9612 -1.2170 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 3.1500 1.1383 -0.5139 24 1 1.6085 2.0284 -0.5138 25 1 2.5440 0.9052 2.1715 26 1 1.1915 3.5577 1.1861 27 1 1.4645 3.0674 2.9428 28 1 3.9654 2.9754 2.5288 29 1 3.6923 3.4660 0.7719 30 1 0.4949 -2.3344 -0.0005 31 1 2.8235 -3.6605 -0.8921 32 1 2.8247 -3.6613 0.8878 33 1 0.5768 -4.7089 0.8882 34 1 0.5762 -4.7078 -0.8918 35 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612154822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:25 Heat of formation + Delta-G solvation = -31.836655 kcal Electronic energy + Delta-G solvation = -15339.653673 eV Core-core repulsion = 12758.589493 eV Total energy + Delta-G solvation = -2581.064180 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22409 -38.48091 -36.59573 -36.08494 -34.75847 -31.55567 -28.93637 -27.41599 -25.98115 -23.22358 -22.99386 -21.95032 -20.88839 -19.00727 -18.48132 -17.55930 -16.92024 -16.49776 -16.26852 -15.60189 -15.22223 -14.75759 -14.69246 -14.24651 -13.96786 -13.58226 -13.37862 -13.01816 -12.92151 -12.54051 -12.52430 -12.32420 -12.23052 -11.67286 -11.51874 -11.39268 -11.11645 -10.81064 -10.59759 -10.16178 -9.49855 -8.23705 -6.34251 1.42209 1.44931 1.52651 1.70135 2.13525 2.41409 2.92882 3.07796 3.10976 3.84010 4.01926 4.08032 4.21376 4.37483 4.45529 4.50239 4.61135 4.71781 4.79102 4.82730 4.85203 4.90146 5.03974 5.22685 5.28100 5.30265 5.50704 5.58235 5.62720 5.78911 5.93973 6.17079 6.78243 6.99701 7.34985 7.56685 8.88121 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060068 B = 0.004451 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.023160 B = 6289.085227 C = 6525.442283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.628 5.628 3 C 0.165 3.835 4 C -0.187 4.187 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.694 3.306 8 O -0.639 6.639 9 N -0.734 5.734 10 C 0.159 3.841 11 C 0.025 3.975 12 C -0.549 4.549 13 H 0.058 0.942 14 C 0.009 3.991 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.268 1.268 20 H 0.063 0.937 21 H 0.104 0.896 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.405 0.595 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 19.551 1.030 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.365 5.365 3 C 0.042 3.958 4 C -0.207 4.207 5 C -0.195 4.195 6 C -0.213 4.213 7 C 0.395 3.605 8 O -0.521 6.521 9 N -0.391 5.391 10 C 0.035 3.965 11 C -0.012 4.012 12 C -0.587 4.587 13 H 0.077 0.923 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.081 0.919 21 H 0.123 0.877 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.242 0.758 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.743 19.429 1.017 19.470 hybrid contribution -0.047 -1.193 0.182 1.208 sum -0.791 18.235 1.199 18.292 Atomic orbital electron populations 1.21975 0.77433 1.04475 1.02838 1.47075 1.07815 1.03974 1.77625 1.20996 0.97065 0.83362 0.94377 1.22634 1.07822 0.92140 0.98079 1.23129 0.95194 0.98247 1.02958 1.23015 0.94392 0.99953 1.03899 1.16204 0.85015 0.81447 0.77853 1.90844 1.13718 1.87110 1.60404 1.45391 1.10426 1.04500 1.78742 1.21077 0.94698 0.81270 0.99468 1.19111 0.94175 0.91612 0.96307 1.21436 0.93603 0.91910 1.51784 0.92335 1.25865 0.95806 1.03055 0.94309 1.70051 1.07529 1.28097 1.50882 0.85490 0.78312 0.78071 0.79131 1.19380 1.20459 1.19328 0.91884 0.87712 0.91406 0.91867 0.86990 0.90921 0.86642 0.88648 0.88969 0.87438 0.75752 0.93890 0.94069 0.97385 0.97255 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.25 127.77 1.31 2.66 16 2 N -0.63 -16.81 2.87 -864.89 -2.49 -19.30 16 3 C 0.16 3.71 5.73 86.38 0.50 4.20 16 4 C -0.19 -4.08 6.01 -10.80 -0.06 -4.14 16 5 C -0.16 -2.33 10.18 30.59 0.31 -2.02 16 6 C -0.18 -3.00 10.25 30.59 0.31 -2.69 16 7 C 0.69 25.97 8.28 179.06 1.48 27.46 16 8 O -0.64 -29.32 15.92 -4.01 -0.06 -29.39 16 9 N -0.73 -27.70 5.42 -478.54 -2.59 -30.30 16 10 C 0.16 7.26 5.61 86.38 0.48 7.74 16 11 C 0.03 1.32 5.09 29.85 0.15 1.47 16 12 C -0.55 -31.25 9.11 25.60 0.23 -31.01 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 14 C 0.01 0.48 5.46 84.66 0.46 0.94 16 15 N -0.93 -54.61 13.29 21.45 0.28 -54.33 16 16 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.10 1.20 7.89 -2.38 -0.02 1.18 16 22 H 0.07 1.26 6.36 -2.39 -0.02 1.24 16 23 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 24 H 0.11 1.64 7.63 -2.39 -0.02 1.62 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.12 1.21 8.03 -2.39 -0.02 1.19 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.41 13.12 6.20 -92.71 -0.58 12.55 16 31 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -70.39 297.19 2.84 -67.56 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.49 Total: 15.15 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.18 Total: 4.60 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.79 Total: -103.93 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.06 Total: -29.39 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.39 2.84 -67.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612154822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.721 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds