Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99913 * 2 1 4 4 C 1.53787 * 113.61127 * 205.00021 * 3 2 1 5 5 C 1.53784 * 87.07923 * 220.01561 * 4 3 2 6 6 C 1.50702 * 113.61290 * 270.88102 * 5 4 3 7 7 O 1.21281 * 119.99897 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99896 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00128 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00245 * 180.02562 * 8 6 5 11 11 C 1.50702 * 109.47242 * 89.99822 * 10 8 6 12 12 H 1.08001 * 119.99994 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00145 * 180.02562 * 11 10 8 14 14 N 1.31508 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00062 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46854 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46971 * 119.99930 * 15 13 11 18 18 H 1.48496 * 109.47148 * 240.00018 * 15 13 11 19 19 C 1.53778 * 113.61883 * 107.50322 * 3 2 1 20 20 H 1.08999 * 109.47304 * 300.00671 * 1 2 3 21 21 H 1.09001 * 109.46976 * 60.00232 * 1 2 3 22 22 H 1.08995 * 109.46851 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00019 * 236.04078 * 2 1 3 24 24 H 1.08998 * 112.90630 * 336.24254 * 3 2 1 25 25 H 1.09004 * 113.61202 * 334.56314 * 4 3 2 26 26 H 1.08994 * 113.61447 * 105.46745 * 4 3 2 27 27 H 1.08993 * 113.61313 * 139.97752 * 5 4 3 28 28 H 1.09003 * 109.46642 * 90.00200 * 9 8 6 29 29 H 1.08994 * 109.47377 * 210.00070 * 9 8 6 30 30 H 1.08995 * 109.47008 * 330.00266 * 9 8 6 31 31 H 1.08992 * 109.47700 * 209.99802 * 10 8 6 32 32 H 1.09003 * 109.46907 * 330.00373 * 10 8 6 33 33 H 0.97004 * 120.00068 * 179.97438 * 14 13 11 34 34 H 1.08999 * 113.61111 * 254.52872 * 19 3 2 35 35 H 1.09004 * 113.61682 * 25.42269 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4085 1.4888 -0.5955 5 6 3.7137 2.4925 0.5289 6 6 3.3872 3.9192 0.1697 7 8 2.9284 4.1797 -0.9223 8 7 3.6051 4.9055 1.0619 9 6 4.1588 4.5907 2.3813 10 6 3.2872 6.2923 0.7130 11 6 1.8639 6.5954 1.1049 12 1 1.2570 5.8314 1.5680 13 6 1.3366 7.8479 0.8723 14 7 2.0754 8.7780 0.3079 15 14 -0.4274 8.2237 1.3588 16 1 -1.0396 7.0175 1.9715 17 1 -0.4436 9.3388 2.3393 18 1 -1.2011 8.6138 0.1528 19 6 2.6119 1.7948 1.3437 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8306 -0.5262 -0.7813 24 1 1.2896 2.0968 -0.4045 25 1 3.9884 0.5683 -0.5285 26 1 3.4271 1.9304 -1.5918 27 1 4.7101 2.3799 0.9560 28 1 5.2470 4.6368 2.3390 29 1 3.7927 5.3129 3.1108 30 1 3.8488 3.5880 2.6756 31 1 3.9612 6.9643 1.2441 32 1 3.4060 6.4330 -0.3614 33 1 1.7043 9.6591 0.1439 34 1 1.9873 2.4833 1.9129 35 1 2.9740 0.9579 1.9410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693562033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = -14.314425 kcal Electronic energy + Delta-G solvation = -16077.331394 eV Core-core repulsion = 13497.027034 eV Total energy + Delta-G solvation = -2580.304359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06453 -37.41702 -34.76033 -33.85770 -32.54016 -28.14413 -26.41827 -25.67352 -25.40308 -23.85729 -22.22525 -20.12215 -17.78276 -16.62594 -16.42924 -15.73147 -15.43734 -14.84070 -14.66320 -14.18511 -14.03970 -13.05948 -12.70057 -12.39970 -12.19909 -12.15841 -12.05754 -11.76749 -11.54295 -11.19139 -11.16722 -10.85554 -10.59394 -10.28071 -10.17564 -10.09156 -9.60156 -8.83306 -8.45732 -8.43884 -7.61085 -6.04237 -4.08858 3.29121 3.35779 3.38648 3.43807 3.97453 4.29269 4.44451 4.74225 4.79618 5.02774 5.08941 5.29846 5.39612 5.46601 5.59084 5.72753 5.76389 5.85321 5.88816 5.96982 6.07864 6.18902 6.27165 6.31014 6.36398 7.06782 7.11321 7.35414 7.45501 7.56898 7.92645 8.24121 8.45863 8.91216 9.13156 9.56341 11.03888 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.007656 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.082055 B = 3656.609568 C = 4210.415707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.684 5.684 3 C 0.057 3.943 4 C -0.124 4.124 5 C -0.136 4.136 6 C 0.521 3.479 7 O -0.543 6.543 8 N -0.600 5.600 9 C 0.083 3.917 10 C 0.244 3.756 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.109 4.109 20 H 0.064 0.936 21 H 0.023 0.977 22 H 0.063 0.937 23 H 0.339 0.661 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -14.842 2.712 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.314 5.314 3 C -0.053 4.053 4 C -0.162 4.162 5 C -0.159 4.159 6 C 0.307 3.693 7 O -0.421 6.421 8 N -0.331 5.331 9 C -0.061 4.061 10 C 0.125 3.875 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.148 4.148 20 H 0.083 0.917 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.157 0.843 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.152 -14.549 2.769 14.966 hybrid contribution -1.142 0.671 -0.502 1.417 sum 1.010 -13.878 2.267 14.099 Atomic orbital electron populations 1.22233 0.88170 1.01297 1.00733 1.60598 1.07738 1.13905 1.49128 1.23127 0.95416 0.89394 0.97314 1.23050 0.95849 0.98162 0.99150 1.22299 1.00724 0.93159 0.99669 1.19828 0.78698 0.85970 0.84803 1.90643 1.44959 1.83677 1.22800 1.48093 1.61810 1.09649 1.13591 1.21654 0.97352 1.01189 0.85911 1.19295 0.95814 0.74704 0.97726 1.21473 0.97633 0.97122 1.40088 0.92462 1.24941 0.97995 0.96112 0.95117 1.69942 1.36435 1.04058 1.42987 0.86455 0.84660 0.78183 0.78218 1.19814 1.20913 1.20885 1.22962 0.96178 0.99220 0.96438 0.91675 0.95855 0.91806 0.84347 0.90043 0.89351 0.90105 0.88642 0.93850 0.90885 0.92144 0.94997 0.93881 0.92777 0.91226 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.54 60.07 0.63 0.92 16 2 N -0.68 -8.33 6.91 -113.14 -0.78 -9.11 16 3 C 0.06 0.84 3.79 -66.90 -0.25 0.58 16 4 C -0.12 -1.73 7.02 -25.91 -0.18 -1.91 16 5 C -0.14 -2.10 2.98 -90.96 -0.27 -2.37 16 6 C 0.52 11.04 6.93 -10.99 -0.08 10.97 16 7 O -0.54 -13.83 15.32 5.56 0.09 -13.75 16 8 N -0.60 -13.04 2.86 -182.96 -0.52 -13.56 16 9 C 0.08 1.36 10.11 59.85 0.60 1.96 16 10 C 0.24 6.51 5.16 -5.19 -0.03 6.48 16 11 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 C -0.11 -1.55 6.58 -25.92 -0.17 -1.72 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.34 3.55 8.63 -39.29 -0.34 3.21 16 24 H 0.08 1.45 7.79 -51.93 -0.40 1.05 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.28 7.43 -51.93 -0.39 0.89 16 27 H 0.10 1.25 7.85 -51.93 -0.41 0.84 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.06 0.83 6.00 -51.93 -0.31 0.52 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 1.10 7.97 -51.93 -0.41 0.68 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -32.79 291.39 -6.84 -39.63 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.57 Total: 0.35 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.16 Total: 1.14 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.57 Total: -48.84 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.79 -6.84 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693562033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.320 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds