Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99913 * 2 1 4 4 C 1.53787 * 113.61127 * 205.00021 * 3 2 1 5 5 C 1.53784 * 87.07923 * 220.01561 * 4 3 2 6 6 C 1.50702 * 113.61290 * 270.88102 * 5 4 3 7 7 O 1.21281 * 119.99897 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99896 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00128 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00245 * 180.02562 * 8 6 5 11 11 C 1.50702 * 109.47242 * 89.99822 * 10 8 6 12 12 H 1.08001 * 119.99994 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00145 * 180.02562 * 11 10 8 14 14 N 1.31508 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00062 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46854 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46971 * 119.99930 * 15 13 11 18 18 H 1.48496 * 109.47148 * 240.00018 * 15 13 11 19 19 C 1.53778 * 113.61883 * 107.50322 * 3 2 1 20 20 H 1.08999 * 109.47304 * 300.00671 * 1 2 3 21 21 H 1.09001 * 109.46976 * 60.00232 * 1 2 3 22 22 H 1.08995 * 109.46851 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00019 * 236.04078 * 2 1 3 24 24 H 1.08998 * 112.90630 * 336.24254 * 3 2 1 25 25 H 1.09004 * 113.61202 * 334.56314 * 4 3 2 26 26 H 1.08994 * 113.61447 * 105.46745 * 4 3 2 27 27 H 1.08993 * 113.61313 * 139.97752 * 5 4 3 28 28 H 1.09003 * 109.46642 * 90.00200 * 9 8 6 29 29 H 1.08994 * 109.47377 * 210.00070 * 9 8 6 30 30 H 1.08995 * 109.47008 * 330.00266 * 9 8 6 31 31 H 1.08992 * 109.47700 * 209.99802 * 10 8 6 32 32 H 1.09003 * 109.46907 * 330.00373 * 10 8 6 33 33 H 0.97004 * 120.00068 * 179.97438 * 14 13 11 34 34 H 1.08999 * 113.61111 * 254.52872 * 19 3 2 35 35 H 1.09004 * 113.61682 * 25.42269 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4085 1.4888 -0.5955 5 6 3.7137 2.4925 0.5289 6 6 3.3872 3.9192 0.1697 7 8 2.9284 4.1797 -0.9223 8 7 3.6051 4.9055 1.0619 9 6 4.1588 4.5907 2.3813 10 6 3.2872 6.2923 0.7130 11 6 1.8639 6.5954 1.1049 12 1 1.2570 5.8314 1.5680 13 6 1.3366 7.8479 0.8723 14 7 2.0754 8.7780 0.3079 15 14 -0.4274 8.2237 1.3588 16 1 -1.0396 7.0175 1.9715 17 1 -0.4436 9.3388 2.3393 18 1 -1.2011 8.6138 0.1528 19 6 2.6119 1.7948 1.3437 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8306 -0.5262 -0.7813 24 1 1.2896 2.0968 -0.4045 25 1 3.9884 0.5683 -0.5285 26 1 3.4271 1.9304 -1.5918 27 1 4.7101 2.3799 0.9560 28 1 5.2470 4.6368 2.3390 29 1 3.7927 5.3129 3.1108 30 1 3.8488 3.5880 2.6756 31 1 3.9612 6.9643 1.2441 32 1 3.4060 6.4330 -0.3614 33 1 1.7043 9.6591 0.1439 34 1 1.9873 2.4833 1.9129 35 1 2.9740 0.9579 1.9410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693562033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = -38.571101 kcal Electronic energy + Delta-G solvation = -16078.383242 eV Core-core repulsion = 13497.027034 eV Total energy + Delta-G solvation = -2581.356208 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49617 -38.86363 -36.57568 -35.02779 -34.59961 -30.10589 -27.71702 -27.15061 -26.59211 -25.44033 -23.78443 -21.52478 -19.30881 -18.70937 -17.91813 -17.16111 -16.92928 -16.42197 -16.07737 -15.69174 -15.56564 -14.48954 -14.33134 -13.82765 -13.69383 -13.49576 -13.28728 -13.19580 -13.11851 -12.81150 -12.79607 -12.51974 -12.29149 -12.23913 -11.71666 -11.43654 -11.29350 -10.68373 -10.53697 -9.48975 -9.42405 -8.25818 -6.40927 1.32876 1.35041 1.47034 1.78842 2.29312 2.43814 3.03307 3.29764 3.58776 3.59190 3.74704 3.84951 4.27375 4.46278 4.49101 4.55755 4.62361 4.71910 4.83106 4.92179 4.95567 4.97676 4.99589 5.05863 5.13892 5.18756 5.31020 5.53753 5.82576 6.02251 6.02959 6.46901 6.66825 6.78622 7.25061 7.47625 8.81497 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.007656 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.082055 B = 3656.609568 C = 4210.415707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.673 5.673 3 C 0.053 3.947 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.509 3.491 7 O -0.599 6.599 8 N -0.609 5.609 9 C 0.078 3.922 10 C 0.257 3.743 11 C -0.542 4.542 12 H 0.051 0.949 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.266 1.266 18 H -0.281 1.281 19 C -0.095 4.095 20 H 0.055 0.945 21 H 0.012 0.988 22 H 0.090 0.910 23 H 0.351 0.649 24 H 0.036 0.964 25 H 0.130 0.870 26 H 0.054 0.946 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.025 0.975 32 H -0.004 1.004 33 H 0.268 0.732 34 H 0.050 0.950 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -17.078 4.415 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.304 5.304 3 C -0.057 4.057 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.298 3.702 7 O -0.481 6.481 8 N -0.339 5.339 9 C -0.064 4.064 10 C 0.136 3.864 11 C -0.580 4.580 12 H 0.069 0.931 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.191 1.191 18 H -0.207 1.207 19 C -0.134 4.134 20 H 0.074 0.926 21 H 0.031 0.969 22 H 0.108 0.892 23 H 0.170 0.830 24 H 0.054 0.946 25 H 0.148 0.852 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.277 -16.814 4.509 17.557 hybrid contribution -1.152 1.355 -1.066 2.074 sum 1.125 -15.459 3.443 15.878 Atomic orbital electron populations 1.22277 0.87805 1.02696 0.99801 1.60617 1.08096 1.12104 1.49602 1.22965 0.95126 0.89804 0.97830 1.23087 0.95729 0.99029 0.97215 1.22248 1.02954 0.88913 1.01066 1.20942 0.77284 0.88197 0.83773 1.90609 1.47336 1.84931 1.25251 1.48143 1.61983 1.07857 1.15924 1.21945 0.98906 1.02703 0.82816 1.18767 0.95077 0.77911 0.94659 1.21712 0.98618 0.97332 1.40385 0.93097 1.25873 1.02621 0.95873 0.94837 1.70054 1.38512 1.04582 1.43668 0.85372 0.78875 0.78469 0.78140 1.19216 1.19097 1.20700 1.22972 0.94989 0.99473 0.95954 0.92618 0.96912 0.89153 0.83021 0.94567 0.85233 0.92721 0.84847 0.90944 0.91665 0.88867 0.95745 0.98559 0.92327 0.93145 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.54 127.69 1.35 1.86 16 2 N -0.67 -14.79 6.91 -511.86 -3.54 -18.33 16 3 C 0.05 1.49 3.79 45.44 0.17 1.67 16 4 C -0.11 -2.91 7.02 31.12 0.22 -2.70 16 5 C -0.13 -3.71 2.98 -11.01 -0.03 -3.74 16 6 C 0.51 21.88 6.93 87.66 0.61 22.49 16 7 O -0.60 -32.19 15.32 -3.03 -0.05 -32.23 16 8 N -0.61 -26.75 2.86 -851.14 -2.43 -29.18 16 9 C 0.08 2.41 10.11 127.77 1.29 3.70 16 10 C 0.26 14.36 5.16 85.63 0.44 14.80 16 11 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 12 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 13 C 0.01 0.40 5.46 84.66 0.46 0.87 16 14 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 15 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 C -0.10 -2.44 6.58 31.12 0.20 -2.24 16 20 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 22 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 23 H 0.35 6.34 8.63 -89.70 -0.77 5.56 16 24 H 0.04 1.35 7.79 -2.39 -0.02 1.33 16 25 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 27 H 0.13 2.85 7.85 -2.39 -0.02 2.83 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 30 H 0.09 2.25 6.00 -2.39 -0.01 2.23 16 31 H 0.02 1.37 8.07 -2.39 -0.02 1.36 16 32 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.05 1.50 7.97 -2.39 -0.02 1.48 16 35 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -75.32 291.39 1.54 -73.78 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.29 Total: 10.26 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 4.95 Total: 4.80 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -5.69 Total: -104.43 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.23 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.32 1.54 -73.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693562033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.214 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds