Wall clock time and date at job start Mon Mar 30 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 110.99990 * 2 1 4 4 H 1.09002 * 112.84869 * 25.33402 * 3 2 1 5 5 C 1.53786 * 113.61608 * 156.52978 * 3 2 1 6 6 C 1.53783 * 87.08050 * 140.06254 * 5 3 2 7 7 H 1.09005 * 113.60997 * 89.20380 * 6 5 3 8 8 C 1.50697 * 113.61605 * 220.01751 * 6 5 3 9 9 O 1.21283 * 119.99506 * 0.02562 * 8 6 5 10 10 N 1.34772 * 120.00360 * 180.02562 * 8 6 5 11 11 C 1.46499 * 120.00506 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47388 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.47242 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99900 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00220 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00414 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99919 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47158 * 89.99458 * 17 15 13 19 19 H 1.48491 * 109.47305 * 209.99862 * 17 15 13 20 20 H 1.48502 * 109.47085 * 330.00107 * 17 15 13 21 21 C 1.53781 * 113.61428 * 254.13870 * 3 2 1 22 22 H 1.09006 * 109.47433 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47121 * 299.99542 * 1 2 3 24 24 H 1.08994 * 109.47632 * 59.99738 * 1 2 3 25 25 H 1.00904 * 110.99967 * 236.04742 * 2 1 3 26 26 H 1.08992 * 113.61675 * 254.61513 * 5 3 2 27 27 H 1.09000 * 113.60973 * 25.51800 * 5 3 2 28 28 H 0.97010 * 119.99465 * 359.97438 * 10 8 6 29 29 H 1.08994 * 109.46816 * 300.00422 * 11 10 8 30 30 H 1.09005 * 109.46826 * 59.99681 * 11 10 8 31 31 H 1.08999 * 109.47014 * 300.00034 * 12 11 10 32 32 H 1.08999 * 109.47104 * 59.99678 * 12 11 10 33 33 H 0.96992 * 120.00347 * 179.97438 * 16 15 13 34 34 H 1.08999 * 113.61567 * 334.48132 * 21 3 2 35 35 H 1.08998 * 113.61196 * 105.38486 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.2995 2.0919 0.4298 5 6 3.4228 1.4834 0.5612 6 6 3.6994 2.4994 -0.5596 7 1 3.4707 3.5284 -0.2823 8 6 5.0620 2.3511 -1.1861 9 8 5.8191 1.4887 -0.7938 10 7 5.4392 3.1769 -2.1821 11 6 6.7636 3.0325 -2.7915 12 6 6.9382 4.0853 -3.8878 13 6 8.3007 3.9372 -4.5142 14 1 8.9747 3.1686 -4.1655 15 6 8.6867 4.7820 -5.5332 16 7 9.8756 4.6524 -6.0802 17 14 7.5208 6.1109 -6.1367 18 1 7.7416 7.3549 -5.3564 19 1 7.7757 6.3771 -7.5752 20 1 6.1181 5.6571 -5.9583 21 6 2.5757 1.8085 -1.3554 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8306 -0.5261 -0.7814 26 1 3.4662 1.9141 1.5614 27 1 4.0012 0.5641 0.4696 28 1 4.8334 3.8665 -2.4961 29 1 7.5309 3.1708 -2.0299 30 1 6.8574 2.0368 -3.2251 31 1 6.1708 3.9474 -4.6495 32 1 6.8445 5.0808 -3.4538 33 1 10.1470 5.2465 -6.7972 34 1 2.9230 0.9780 -1.9699 35 1 1.9356 2.5016 -1.9013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693610072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:56 Heat of formation + Delta-G solvation = -54.056423 kcal Electronic energy + Delta-G solvation = -15229.098012 eV Core-core repulsion = 12647.070311 eV Total energy + Delta-G solvation = -2582.027702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34105 -39.12221 -36.61879 -34.88103 -34.73675 -32.07168 -28.10183 -26.62927 -26.40654 -24.62675 -22.64225 -21.67524 -20.46334 -19.01939 -18.25861 -16.92192 -16.71108 -16.43845 -16.23668 -15.82271 -15.36872 -14.76732 -14.60053 -14.49615 -14.27954 -13.44635 -13.36510 -13.11622 -12.94071 -12.73917 -12.23868 -12.17294 -12.05878 -11.79143 -11.76112 -11.53155 -11.44878 -10.80254 -10.68593 -10.04968 -9.30029 -8.31450 -6.39252 1.38244 1.41232 1.52510 1.64700 2.30278 2.35959 3.03507 3.30796 3.50016 3.61319 3.91002 3.93863 4.17935 4.39051 4.40577 4.51201 4.59376 4.72160 4.72752 4.76733 4.82717 5.03034 5.08802 5.11158 5.16960 5.32837 5.38659 5.43914 5.64252 6.15268 6.20698 6.42424 6.63254 6.70662 7.25385 7.32425 8.85570 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052140 B = 0.004533 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.886328 B = 6175.794891 C = 6460.566116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.700 5.700 3 C 0.078 3.922 4 H 0.122 0.878 5 C -0.113 4.113 6 C -0.130 4.130 7 H 0.145 0.855 8 C 0.511 3.489 9 O -0.594 6.594 10 N -0.715 5.715 11 C 0.143 3.857 12 C -0.011 4.011 13 C -0.542 4.542 14 H 0.026 0.974 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.961 3.039 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.236 1.236 21 C -0.143 4.143 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.030 0.970 25 H 0.345 0.655 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.414 0.586 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.268 0.732 34 H 0.071 0.929 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.193 -1.587 10.292 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.330 5.330 3 C -0.032 4.032 4 H 0.139 0.861 5 C -0.152 4.152 6 C -0.151 4.151 7 H 0.163 0.837 8 C 0.299 3.701 9 O -0.475 6.475 10 N -0.366 5.366 11 C 0.019 3.981 12 C -0.049 4.049 13 C -0.581 4.581 14 H 0.045 0.955 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.783 3.217 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.159 1.159 21 C -0.183 4.183 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.163 0.837 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.251 0.749 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.512 -2.226 11.126 25.210 hybrid contribution 0.345 0.795 -1.612 1.830 sum -22.167 -1.430 9.514 24.165 Atomic orbital electron populations 1.22263 0.86611 1.02448 1.00906 1.60329 1.08970 1.13452 1.50236 1.23020 0.95180 0.90331 0.94679 0.86056 1.22963 0.96456 0.98114 0.97629 1.22776 0.89914 1.03299 0.99124 0.83710 1.21289 0.89627 0.80084 0.79070 1.90663 1.56305 1.36640 1.63921 1.46112 1.17667 1.36016 1.36806 1.21007 0.83395 0.98919 0.94812 1.19635 0.95768 0.95304 0.94176 1.21278 1.00655 1.17154 1.18964 0.95527 1.26118 0.97058 1.00260 0.95965 1.70076 1.21873 1.40448 1.26742 0.85505 0.80341 0.78538 0.77286 1.18900 1.21199 1.15890 1.23641 0.96060 1.00761 0.97809 0.91075 0.91195 0.95153 0.83671 0.90065 0.91350 0.74932 0.94118 0.94201 0.94454 0.94549 0.92278 0.90992 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.55 127.69 1.35 1.66 16 2 N -0.70 -11.41 6.97 -511.87 -3.57 -14.98 16 3 C 0.08 1.20 4.16 45.44 0.19 1.38 16 4 H 0.12 1.36 7.88 -2.39 -0.02 1.34 16 5 C -0.11 -2.36 7.21 31.12 0.22 -2.13 16 6 C -0.13 -2.59 4.15 -10.92 -0.05 -2.64 16 7 H 0.15 1.97 8.14 -2.38 -0.02 1.95 16 8 C 0.51 16.10 7.36 87.66 0.65 16.75 16 9 O -0.59 -24.79 15.90 -3.04 -0.05 -24.84 16 10 N -0.71 -22.38 5.56 -463.07 -2.57 -24.95 16 11 C 0.14 5.94 5.61 86.38 0.48 6.43 16 12 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 13 C -0.54 -31.28 9.66 25.60 0.25 -31.03 16 14 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 15 C 0.00 0.17 5.47 84.66 0.46 0.64 16 16 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 17 Si 0.96 42.16 27.47 68.60 1.88 44.04 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 21 C -0.14 -2.31 7.27 31.21 0.23 -2.08 16 22 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 24 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.34 5.68 8.29 -89.69 -0.74 4.93 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.89 7.43 -2.39 -0.02 1.87 16 28 H 0.41 9.86 8.47 -92.70 -0.79 9.08 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 32 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.07 1.42 7.78 -2.39 -0.02 1.40 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -73.36 292.25 -0.60 -73.96 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.50 Total: 17.52 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 3.91 Total: -11.39 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -5.84 Total: -99.29 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Total: -73.36 -0.60 -73.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693610072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.905 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds