Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.53001 * 109.46886 * 64.99830 * 4 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 5 4 8 8 H 1.09005 * 110.27652 * 307.09346 * 7 6 5 9 9 C 1.54944 * 110.31334 * 185.00270 * 7 6 5 10 10 C 1.55303 * 100.94618 * 204.64120 * 9 7 6 11 11 C 1.54386 * 102.25313 * 34.13077 * 10 9 7 12 12 H 1.08993 * 109.83372 * 98.24577 * 11 10 9 13 13 C 1.50705 * 109.83181 * 219.13324 * 11 10 9 14 14 H 1.07995 * 119.99916 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99751 * 179.97438 * 13 11 10 16 16 N 1.31518 * 120.00399 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99935 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47135 * 60.00040 * 17 15 13 19 19 H 1.48501 * 109.47154 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47067 * 300.00140 * 17 15 13 21 21 O 1.43247 * 107.58577 * 338.64635 * 11 10 9 22 22 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47493 * 299.99883 * 1 2 3 24 24 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 25 25 H 1.08993 * 109.47639 * 240.00095 * 2 1 3 26 26 H 1.08991 * 109.47210 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47381 * 300.00344 * 3 2 1 28 28 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 29 29 H 1.09001 * 109.46741 * 305.00224 * 4 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.46652 * 60.00345 * 5 4 2 32 32 H 1.08992 * 109.47514 * 300.00434 * 5 4 2 33 33 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 35 35 H 1.09000 * 111.12196 * 322.56283 * 9 7 6 36 36 H 1.08998 * 111.12734 * 86.67393 * 9 7 6 37 37 H 1.09000 * 110.85069 * 152.32212 * 10 9 7 38 38 H 1.08998 * 110.84760 * 275.94717 * 10 9 7 39 39 H 0.97002 * 120.00229 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 6 2.1447 -2.9165 2.4375 7 6 1.7405 -4.3908 2.3760 8 1 0.6680 -4.4816 2.2032 9 6 2.1365 -5.1124 3.6888 10 6 2.2565 -6.5796 3.1941 11 6 2.7933 -6.3984 1.7580 12 1 3.8737 -6.5413 1.7463 13 6 2.1360 -7.3940 0.8371 14 1 1.4080 -8.0905 1.2260 15 6 2.4642 -7.4156 -0.5018 16 7 3.3504 -6.5671 -0.9755 17 14 1.6500 -8.6500 -1.6432 18 1 0.1806 -8.4354 -1.6374 19 1 2.1718 -8.4687 -3.0217 20 1 1.9509 -10.0278 -1.1778 21 8 2.4731 -5.0659 1.3412 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 1.6053 -0.2616 2.1369 30 1 3.1263 -0.6442 1.2952 31 1 2.0699 -2.6549 0.3003 32 1 0.5490 -2.2724 1.1421 33 1 3.2310 -2.8395 2.4840 34 1 1.7096 -2.4569 3.3250 35 1 3.0912 -4.7456 4.0659 36 1 1.3553 -5.0137 4.4424 37 1 2.9650 -7.1384 3.8055 38 1 1.2815 -7.0669 3.1851 39 1 3.5809 -6.5820 -1.9176 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703986578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = -88.159356 kcal Electronic energy + Delta-G solvation = -16087.199831 eV Core-core repulsion = 13607.233658 eV Total energy + Delta-G solvation = -2479.966172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.25826 -36.77750 -33.21013 -32.04633 -30.78647 -28.71676 -27.10577 -26.03270 -23.65405 -21.35591 -20.38221 -19.72684 -19.57777 -16.43162 -15.75039 -15.16090 -14.72855 -14.29322 -14.03602 -13.85704 -13.18876 -12.88306 -12.35883 -12.17993 -12.12433 -11.91869 -11.69921 -11.45800 -11.08933 -10.91383 -10.84749 -10.66761 -10.55466 -10.37630 -10.32116 -10.18153 -9.96778 -9.69098 -9.50721 -9.10363 -8.46228 -7.73234 -5.91652 -4.05418 3.35426 3.39960 3.42228 4.47906 4.89746 5.02333 5.05107 5.09397 5.45985 5.48825 5.53845 5.61975 5.65237 5.77803 5.84314 5.86970 5.90013 5.94276 6.04870 6.08443 6.19190 6.20927 6.29269 6.36507 6.45593 6.49766 6.56566 6.66353 6.70542 6.77891 6.86025 6.98688 7.03034 7.72656 7.94976 8.36471 8.71109 9.13264 9.65797 11.14832 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.006698 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.577201 B = 4179.339917 C = 4972.966505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.112 4.112 7 C 0.076 3.924 8 H 0.048 0.952 9 C -0.154 4.154 10 C -0.145 4.145 11 C 0.206 3.794 12 H 0.036 0.964 13 C -0.545 4.545 14 H 0.057 0.943 15 C 0.079 3.921 16 N -0.864 5.864 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.354 6.354 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 11.289 5.033 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.149 4.149 7 C 0.018 3.982 8 H 0.066 0.934 9 C -0.192 4.192 10 C -0.183 4.183 11 C 0.151 3.849 12 H 0.054 0.946 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.126 4.126 16 N -0.500 5.500 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.274 6.274 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.134 11.437 4.672 12.746 hybrid contribution -0.536 -0.788 -0.450 1.053 sum -3.669 10.650 4.222 12.029 Atomic orbital electron populations 1.21879 0.95561 1.02097 1.00957 1.21139 0.95786 0.95710 0.99211 1.21842 1.00852 0.96429 1.01184 1.21655 1.00525 0.95925 0.96847 1.21570 1.00565 0.93694 0.99557 1.21687 1.01148 0.94898 0.97182 1.22697 0.95909 0.91660 0.87970 0.93377 1.23266 1.00673 0.97314 0.97960 1.23195 1.01215 0.94828 0.99086 1.20256 0.95423 0.81004 0.88255 0.94615 1.21370 1.25779 1.17107 0.94003 0.92512 1.25039 0.94375 0.94963 0.98235 1.70032 1.31051 1.34951 1.13960 0.86764 0.79980 0.81794 0.79983 1.20203 1.21219 1.20210 1.88743 1.73569 1.27270 1.37826 0.92079 0.93110 0.93284 0.91065 0.92855 0.93112 0.93055 0.92720 0.92287 0.90664 0.92469 0.91961 0.92577 0.91759 0.92141 0.92488 0.91784 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.95 37.15 0.33 -1.39 16 2 C -0.10 -1.24 2.92 -90.62 -0.26 -1.51 16 3 C -0.15 -1.54 9.19 37.16 0.34 -1.19 16 4 C -0.11 -1.51 4.68 -26.73 -0.13 -1.63 16 5 C -0.12 -1.92 4.90 -26.73 -0.13 -2.05 16 6 C -0.11 -1.91 4.94 -26.73 -0.13 -2.04 16 7 C 0.08 1.58 3.40 -25.71 -0.09 1.49 16 8 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.15 -2.85 6.57 -24.48 -0.16 -3.01 16 10 C -0.15 -3.10 6.53 -24.78 -0.16 -3.26 16 11 C 0.21 5.47 3.35 -27.15 -0.09 5.38 16 12 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 13 C -0.54 -15.67 8.75 -34.44 -0.30 -15.97 16 14 H 0.06 1.59 7.52 -52.49 -0.39 1.19 16 15 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 16 N -0.86 -26.20 12.93 55.43 0.72 -25.48 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 O -0.35 -9.34 9.98 -35.23 -0.35 -9.70 16 22 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.49 7.99 -51.93 -0.42 1.07 16 32 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -30.39 310.02 -8.22 -38.62 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.36 Total: -1.90 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -0.88 Total: -22.99 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.72 Total: -25.48 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.35 Total: -9.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.39 -8.22 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703986578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.542 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds