Wall clock time and date at job start Mon Mar 30 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.53001 * 109.46886 * 64.99830 * 4 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 5 4 8 8 H 1.09005 * 110.27652 * 307.09346 * 7 6 5 9 9 C 1.54944 * 110.31334 * 185.00270 * 7 6 5 10 10 C 1.55303 * 100.94618 * 204.64120 * 9 7 6 11 11 C 1.54386 * 102.25313 * 34.13077 * 10 9 7 12 12 H 1.08993 * 109.83372 * 98.24577 * 11 10 9 13 13 C 1.50705 * 109.83181 * 219.13324 * 11 10 9 14 14 H 1.07995 * 119.99916 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99751 * 179.97438 * 13 11 10 16 16 N 1.31518 * 120.00399 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99935 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47135 * 60.00040 * 17 15 13 19 19 H 1.48501 * 109.47154 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47067 * 300.00140 * 17 15 13 21 21 O 1.43247 * 107.58577 * 338.64635 * 11 10 9 22 22 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47493 * 299.99883 * 1 2 3 24 24 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 25 25 H 1.08993 * 109.47639 * 240.00095 * 2 1 3 26 26 H 1.08991 * 109.47210 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47381 * 300.00344 * 3 2 1 28 28 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 29 29 H 1.09001 * 109.46741 * 305.00224 * 4 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.46652 * 60.00345 * 5 4 2 32 32 H 1.08992 * 109.47514 * 300.00434 * 5 4 2 33 33 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 35 35 H 1.09000 * 111.12196 * 322.56283 * 9 7 6 36 36 H 1.08998 * 111.12734 * 86.67393 * 9 7 6 37 37 H 1.09000 * 110.85069 * 152.32212 * 10 9 7 38 38 H 1.08998 * 110.84760 * 275.94717 * 10 9 7 39 39 H 0.97002 * 120.00229 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 6 2.1447 -2.9165 2.4375 7 6 1.7405 -4.3908 2.3760 8 1 0.6680 -4.4816 2.2032 9 6 2.1365 -5.1124 3.6888 10 6 2.2565 -6.5796 3.1941 11 6 2.7933 -6.3984 1.7580 12 1 3.8737 -6.5413 1.7463 13 6 2.1360 -7.3940 0.8371 14 1 1.4080 -8.0905 1.2260 15 6 2.4642 -7.4156 -0.5018 16 7 3.3504 -6.5671 -0.9755 17 14 1.6500 -8.6500 -1.6432 18 1 0.1806 -8.4354 -1.6374 19 1 2.1718 -8.4687 -3.0217 20 1 1.9509 -10.0278 -1.1778 21 8 2.4731 -5.0659 1.3412 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 1.6053 -0.2616 2.1369 30 1 3.1263 -0.6442 1.2952 31 1 2.0699 -2.6549 0.3003 32 1 0.5490 -2.2724 1.1421 33 1 3.2310 -2.8395 2.4840 34 1 1.7096 -2.4569 3.3250 35 1 3.0912 -4.7456 4.0659 36 1 1.3553 -5.0137 4.4424 37 1 2.9650 -7.1384 3.8055 38 1 1.2815 -7.0669 3.1851 39 1 3.5809 -6.5820 -1.9176 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703986578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:23 Heat of formation + Delta-G solvation = -105.029995 kcal Electronic energy + Delta-G solvation = -16087.931396 eV Core-core repulsion = 13607.233658 eV Total energy + Delta-G solvation = -2480.697738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00637 -37.92112 -34.98919 -33.79934 -32.56535 -30.35100 -28.00715 -27.72526 -25.35090 -22.86001 -22.02490 -21.36302 -20.70516 -18.57441 -17.38526 -16.73770 -16.41671 -15.89534 -15.27408 -15.07260 -14.78721 -14.38348 -13.85516 -13.78753 -13.63426 -13.19287 -13.00478 -12.77333 -12.60957 -12.45456 -12.40069 -12.20933 -12.18065 -11.92402 -11.74611 -11.45767 -11.40028 -11.26748 -11.03648 -10.89421 -10.64689 -9.74593 -8.11582 -6.33688 1.38036 1.41137 1.48739 2.40508 3.08618 3.58815 3.76509 3.97144 4.00796 4.09746 4.19014 4.30405 4.38554 4.52620 4.58723 4.67637 4.79665 4.80444 4.83026 4.87827 4.95682 4.98138 5.03753 5.07784 5.11586 5.16044 5.20420 5.31230 5.38733 5.43720 5.46265 5.57290 5.61268 5.66660 5.77532 6.20719 6.63288 7.11050 7.43725 8.95020 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.006698 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.577201 B = 4179.339917 C = 4972.966505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.112 4.112 6 C -0.104 4.104 7 C 0.061 3.939 8 H 0.042 0.958 9 C -0.139 4.139 10 C -0.140 4.140 11 C 0.196 3.804 12 H -0.001 1.001 13 C -0.566 4.566 14 H 0.059 0.941 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.264 1.264 21 O -0.390 6.390 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 12.190 6.400 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.198 4.198 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.141 4.141 7 C 0.003 3.997 8 H 0.060 0.940 9 C -0.176 4.176 10 C -0.177 4.177 11 C 0.140 3.860 12 H 0.016 0.984 13 C -0.604 4.604 14 H 0.078 0.922 15 C -0.179 4.179 16 N -0.541 5.541 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.188 1.188 21 O -0.310 6.310 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.405 12.336 6.056 14.431 hybrid contribution -0.143 -1.047 -0.852 1.357 sum -4.548 11.289 5.204 13.237 Atomic orbital electron populations 1.21858 0.94803 1.01403 1.02214 1.21150 0.96483 0.96805 0.97760 1.21796 1.00835 0.94907 1.02300 1.21592 1.00469 0.93761 0.98337 1.21493 1.00376 0.95598 0.97466 1.21660 1.00830 0.92755 0.98864 1.23047 0.95092 0.93579 0.87941 0.94028 1.23224 1.02601 0.94377 0.97426 1.23082 1.01205 0.97332 0.96115 1.20177 0.93411 0.81185 0.91246 0.98363 1.21819 1.25781 1.17842 0.94947 0.92239 1.25944 0.94954 0.96960 1.00065 1.70187 1.32719 1.36945 1.14223 0.85645 0.78911 0.79563 0.77662 1.19579 1.20802 1.18833 1.88668 1.74379 1.27349 1.40645 0.93710 0.91563 0.92345 0.93306 0.92908 0.92254 0.91685 0.90440 0.92639 0.95251 0.92145 0.92814 0.88731 0.90481 0.88408 0.90768 0.91805 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.95 71.98 0.64 -2.55 16 2 C -0.10 -2.49 2.92 -10.79 -0.03 -2.52 16 3 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 4 C -0.10 -2.68 4.68 30.59 0.14 -2.53 16 5 C -0.11 -3.70 4.90 30.59 0.15 -3.55 16 6 C -0.10 -3.42 4.94 30.59 0.15 -3.27 16 7 C 0.06 2.50 3.40 31.26 0.11 2.61 16 8 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 9 C -0.14 -4.80 6.57 32.05 0.21 -4.58 16 10 C -0.14 -5.84 6.53 31.86 0.21 -5.63 16 11 C 0.20 10.69 3.35 30.32 0.10 10.79 16 12 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 13 C -0.57 -33.30 8.75 25.60 0.22 -33.08 16 14 H 0.06 3.35 7.52 -2.91 -0.02 3.33 16 15 C 0.02 1.33 5.41 84.65 0.46 1.79 16 16 N -0.90 -56.82 12.93 21.45 0.28 -56.55 16 17 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 O -0.39 -21.26 9.98 -148.98 -1.49 -22.75 16 22 H 0.04 1.11 6.57 -2.39 -0.02 1.09 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.21 7.99 -2.39 -0.02 1.20 16 32 H 0.06 1.93 6.56 -2.39 -0.02 1.91 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 2.47 8.06 -2.39 -0.02 2.46 16 36 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.06 2.64 7.65 -2.39 -0.02 2.62 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -68.10 310.02 4.81 -63.29 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.97 Total: 13.07 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 3.03 Total: -44.55 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.49 Total: -22.75 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.10 4.81 -63.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703986578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.742 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds