Wall clock time and date at job start Mon Mar 30 2020 03:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 6 6 C 1.52997 * 109.47577 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47260 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.27508 * 54.30207 * 7 6 5 9 9 C 1.54952 * 110.31088 * 176.38999 * 7 6 5 10 10 C 1.55415 * 100.89132 * 155.28797 * 9 7 6 11 11 C 1.54376 * 102.31207 * 325.99239 * 10 9 7 12 12 H 1.09003 * 109.83272 * 261.77192 * 11 10 9 13 13 C 1.50701 * 109.83047 * 140.79665 * 11 10 9 14 14 H 1.07997 * 120.00039 * 0.41629 * 13 11 10 15 15 C 1.37879 * 120.00048 * 180.41185 * 13 11 10 16 16 N 1.31515 * 119.99758 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99918 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47410 * 60.00167 * 17 15 13 19 19 H 1.48507 * 109.46897 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47089 * 299.99526 * 17 15 13 21 21 O 1.43243 * 107.58966 * 21.28601 * 11 10 9 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.09001 * 109.46924 * 300.00271 * 5 4 2 32 32 H 1.09000 * 109.47104 * 59.99686 * 5 4 2 33 33 H 1.09001 * 109.47096 * 300.00020 * 6 5 4 34 34 H 1.09000 * 109.46818 * 59.99916 * 6 5 4 35 35 H 1.08997 * 111.12085 * 273.27893 * 9 7 6 36 36 H 1.09000 * 111.12140 * 37.43936 * 9 7 6 37 37 H 1.08999 * 110.88102 * 207.75329 * 10 9 7 38 38 H 1.08999 * 110.93173 * 84.25743 * 10 9 7 39 39 H 0.97006 * 120.00123 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1448 -2.9166 2.4373 7 6 1.7396 -4.3907 2.3763 8 1 2.0824 -4.8385 1.4434 9 6 2.3234 -5.1597 3.5883 10 6 1.3229 -6.3443 3.6940 11 6 -0.0067 -5.6922 3.2580 12 1 -0.5881 -5.4143 4.1372 13 6 -0.7932 -6.6551 2.4064 14 1 -0.3978 -7.6380 2.1969 15 6 -2.0177 -6.2812 1.8946 16 7 -2.4990 -5.0841 2.1493 17 14 -2.9929 -7.4750 0.8395 18 1 -3.2911 -8.6998 1.6245 19 1 -4.2649 -6.8361 0.4159 20 1 -2.1980 -7.8378 -0.3612 21 8 0.3142 -4.5214 2.4977 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.1263 -0.6444 1.2951 30 1 1.6054 -0.2618 2.1369 31 1 0.5490 -2.2724 1.1420 32 1 2.0699 -2.6549 0.3001 33 1 3.2312 -2.8397 2.4836 34 1 1.7099 -2.4570 3.3248 35 1 3.3330 -5.5135 3.3796 36 1 2.3022 -4.5469 4.4894 37 1 1.2587 -6.7082 4.7195 38 1 1.6007 -7.1504 3.0149 39 1 -3.3607 -4.8211 1.7896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703986579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:27 Heat of formation + Delta-G solvation = -88.127386 kcal Electronic energy + Delta-G solvation = -16146.289381 eV Core-core repulsion = 13666.324595 eV Total energy + Delta-G solvation = -2479.964786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.25182 -36.74750 -33.20236 -32.03939 -30.78102 -28.71370 -27.01943 -26.02042 -23.65261 -21.35326 -20.37914 -19.73772 -19.53188 -16.43149 -15.77390 -15.05075 -14.76835 -14.34287 -14.03249 -13.67847 -13.26737 -12.77299 -12.51878 -12.13353 -12.06797 -11.73244 -11.63209 -11.50328 -11.13463 -10.88433 -10.83631 -10.64482 -10.55448 -10.36461 -10.32146 -10.17059 -9.93727 -9.67890 -9.50938 -9.10518 -8.46130 -7.73086 -5.91614 -4.05309 3.35385 3.39922 3.42212 4.47894 4.91105 5.03794 5.07561 5.12324 5.46362 5.48451 5.58367 5.61968 5.71061 5.79729 5.83255 5.87950 5.96932 6.00214 6.05705 6.14173 6.21232 6.25113 6.34784 6.37338 6.47181 6.50860 6.58197 6.66442 6.72090 6.77971 6.86169 7.02408 7.02982 7.72590 7.94924 8.36491 8.70928 9.13339 9.65828 11.14813 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.007094 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.219437 B = 3946.001104 C = 4898.442060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.111 4.111 7 C 0.076 3.924 8 H 0.048 0.952 9 C -0.154 4.154 10 C -0.146 4.146 11 C 0.206 3.794 12 H 0.036 0.964 13 C -0.545 4.545 14 H 0.057 0.943 15 C 0.080 3.920 16 N -0.863 5.863 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.354 6.354 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.998 8.147 -1.543 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.149 4.149 7 C 0.017 3.983 8 H 0.066 0.934 9 C -0.192 4.192 10 C -0.183 4.183 11 C 0.151 3.849 12 H 0.053 0.947 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.126 4.126 16 N -0.499 5.499 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.273 6.273 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.683 8.419 -1.646 12.206 hybrid contribution -0.383 -0.827 -0.530 1.054 sum 8.300 7.592 -2.176 11.457 Atomic orbital electron populations 1.21898 0.95056 1.02777 1.01029 1.21120 0.96220 0.95534 0.98711 1.21850 1.00510 0.96592 1.01377 1.21662 0.99841 0.96152 0.97346 1.21574 1.02934 0.93452 0.97484 1.21685 0.98991 0.95604 0.98616 1.22699 0.86164 0.93472 0.95921 0.93389 1.23281 0.98606 0.98188 0.99116 1.23213 0.97167 0.97539 1.00412 1.20251 0.89912 0.83122 0.91619 0.94659 1.21368 1.03163 0.99450 1.34294 0.92519 1.25037 0.97225 0.94797 0.95532 1.70034 1.18301 1.18218 1.43380 0.86768 0.79373 0.81339 0.81069 1.20212 1.21220 1.20215 1.88742 1.16248 1.46950 1.75407 0.92867 0.91524 0.93422 0.91560 0.92881 0.93090 0.93122 0.92782 0.92261 0.90223 0.92813 0.92604 0.91991 0.92122 0.91759 0.92521 0.91795 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.95 37.16 0.33 -1.69 16 2 C -0.10 -1.22 2.92 -90.63 -0.26 -1.48 16 3 C -0.15 -1.54 9.19 37.16 0.34 -1.19 16 4 C -0.11 -1.52 4.68 -26.73 -0.13 -1.65 16 5 C -0.12 -1.94 4.89 -26.73 -0.13 -2.07 16 6 C -0.11 -1.91 4.95 -26.73 -0.13 -2.04 16 7 C 0.08 1.57 3.41 -25.70 -0.09 1.48 16 8 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.15 -2.84 6.58 -24.42 -0.16 -3.01 16 10 C -0.15 -3.10 6.53 -24.73 -0.16 -3.26 16 11 C 0.21 5.47 3.36 -27.16 -0.09 5.37 16 12 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 13 C -0.55 -15.65 8.75 -34.44 -0.30 -15.95 16 14 H 0.06 1.58 7.52 -52.49 -0.39 1.19 16 15 C 0.08 2.30 5.41 -17.82 -0.10 2.21 16 16 N -0.86 -26.07 12.91 55.43 0.72 -25.36 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 O -0.35 -9.30 9.89 -35.23 -0.35 -9.65 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 1.04 6.57 -51.93 -0.34 0.69 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.57 6.37 -51.93 -0.33 1.24 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -30.23 309.90 -8.22 -38.45 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.36 Total: -1.59 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.88 Total: -23.28 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.72 Total: -25.36 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.35 Total: -9.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.23 -8.22 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703986579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.674 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds