Wall clock time and date at job start Mon Mar 30 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 6 6 C 1.52997 * 109.47577 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47260 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.27508 * 54.30207 * 7 6 5 9 9 C 1.54952 * 110.31088 * 176.38999 * 7 6 5 10 10 C 1.55415 * 100.89132 * 155.28797 * 9 7 6 11 11 C 1.54376 * 102.31207 * 325.99239 * 10 9 7 12 12 H 1.09003 * 109.83272 * 261.77192 * 11 10 9 13 13 C 1.50701 * 109.83047 * 140.79665 * 11 10 9 14 14 H 1.07997 * 120.00039 * 0.41629 * 13 11 10 15 15 C 1.37879 * 120.00048 * 180.41185 * 13 11 10 16 16 N 1.31515 * 119.99758 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99918 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47410 * 60.00167 * 17 15 13 19 19 H 1.48507 * 109.46897 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47089 * 299.99526 * 17 15 13 21 21 O 1.43243 * 107.58966 * 21.28601 * 11 10 9 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.09001 * 109.46924 * 300.00271 * 5 4 2 32 32 H 1.09000 * 109.47104 * 59.99686 * 5 4 2 33 33 H 1.09001 * 109.47096 * 300.00020 * 6 5 4 34 34 H 1.09000 * 109.46818 * 59.99916 * 6 5 4 35 35 H 1.08997 * 111.12085 * 273.27893 * 9 7 6 36 36 H 1.09000 * 111.12140 * 37.43936 * 9 7 6 37 37 H 1.08999 * 110.88102 * 207.75329 * 10 9 7 38 38 H 1.08999 * 110.93173 * 84.25743 * 10 9 7 39 39 H 0.97006 * 120.00123 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1448 -2.9166 2.4373 7 6 1.7396 -4.3907 2.3763 8 1 2.0824 -4.8385 1.4434 9 6 2.3234 -5.1597 3.5883 10 6 1.3229 -6.3443 3.6940 11 6 -0.0067 -5.6922 3.2580 12 1 -0.5881 -5.4143 4.1372 13 6 -0.7932 -6.6551 2.4064 14 1 -0.3978 -7.6380 2.1969 15 6 -2.0177 -6.2812 1.8946 16 7 -2.4990 -5.0841 2.1493 17 14 -2.9929 -7.4750 0.8395 18 1 -3.2911 -8.6998 1.6245 19 1 -4.2649 -6.8361 0.4159 20 1 -2.1980 -7.8378 -0.3612 21 8 0.3142 -4.5214 2.4977 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.1263 -0.6444 1.2951 30 1 1.6054 -0.2618 2.1369 31 1 0.5490 -2.2724 1.1420 32 1 2.0699 -2.6549 0.3001 33 1 3.2312 -2.8397 2.4836 34 1 1.7099 -2.4570 3.3248 35 1 3.3330 -5.5135 3.3796 36 1 2.3022 -4.5469 4.4894 37 1 1.2587 -6.7082 4.7195 38 1 1.6007 -7.1504 3.0149 39 1 -3.3607 -4.8211 1.7896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703986579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:26 Heat of formation + Delta-G solvation = -104.837755 kcal Electronic energy + Delta-G solvation = -16147.013996 eV Core-core repulsion = 13666.324595 eV Total energy + Delta-G solvation = -2480.689402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99803 -37.91327 -34.98561 -33.79440 -32.55668 -30.34896 -28.01878 -27.72188 -25.35030 -22.86122 -22.02345 -21.35221 -20.69547 -18.57002 -17.40279 -16.74188 -16.19605 -16.12844 -15.23141 -15.11872 -14.66198 -14.28558 -14.08698 -13.78737 -13.61470 -13.13748 -12.93634 -12.80531 -12.67684 -12.40953 -12.39471 -12.26159 -12.15616 -11.93982 -11.71654 -11.46229 -11.42915 -11.23164 -11.01836 -10.90341 -10.64172 -9.73945 -8.11139 -6.33141 1.38105 1.41149 1.48675 2.40658 3.09106 3.59153 3.76901 3.96552 4.02271 4.09364 4.15975 4.35614 4.36865 4.52512 4.57584 4.67866 4.77794 4.80352 4.82048 4.91459 4.95043 4.97849 5.03798 5.07660 5.13344 5.17515 5.20527 5.30752 5.34935 5.43739 5.47409 5.57929 5.62030 5.68478 5.77895 6.21082 6.63405 7.11456 7.44129 8.95331 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.007094 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.219437 B = 3946.001104 C = 4898.442060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.103 4.103 7 C 0.061 3.939 8 H 0.041 0.959 9 C -0.139 4.139 10 C -0.140 4.140 11 C 0.196 3.804 12 H -0.002 1.002 13 C -0.567 4.567 14 H 0.059 0.941 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.271 1.271 21 O -0.389 6.389 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.957 8.340 -1.939 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.141 4.141 7 C 0.003 3.997 8 H 0.059 0.941 9 C -0.176 4.176 10 C -0.178 4.178 11 C 0.140 3.860 12 H 0.016 0.984 13 C -0.604 4.604 14 H 0.077 0.923 15 C -0.179 4.179 16 N -0.539 5.539 17 Si 0.782 3.218 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.196 1.196 21 O -0.309 6.309 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.659 8.604 -2.037 13.849 hybrid contribution -0.974 -0.877 -0.399 1.370 sum 9.685 7.726 -2.436 12.627 Atomic orbital electron populations 1.21888 0.96332 1.00872 1.01645 1.21128 0.95130 0.97123 0.98218 1.21797 1.01318 0.94733 1.01951 1.21602 1.01179 0.93702 0.97737 1.21503 1.00184 0.95953 0.97475 1.21655 1.01106 0.93008 0.98307 1.23045 0.83607 0.96256 0.96768 0.94103 1.23240 0.99399 0.96501 0.98460 1.23100 0.95193 0.98312 1.01154 1.20169 0.92186 0.83421 0.90196 0.98392 1.21812 1.03997 1.00101 1.34515 0.92281 1.25933 0.98446 0.96564 0.96915 1.70188 1.18718 1.20268 1.44748 0.85656 0.77728 0.79210 0.79254 1.18855 1.20800 1.19619 1.88669 1.20119 1.46716 1.75398 0.93037 0.94649 0.92032 0.91515 0.92709 0.91738 0.92222 0.90446 0.92592 0.94484 0.92741 0.88807 0.92765 0.88424 0.90471 0.90811 0.91842 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.95 71.98 0.64 -3.45 16 2 C -0.10 -2.32 2.92 -10.80 -0.03 -2.35 16 3 C -0.14 -2.61 9.19 71.98 0.66 -1.94 16 4 C -0.10 -2.68 4.68 30.59 0.14 -2.54 16 5 C -0.11 -3.76 4.89 30.59 0.15 -3.61 16 6 C -0.10 -3.40 4.95 30.59 0.15 -3.25 16 7 C 0.06 2.50 3.41 31.26 0.11 2.60 16 8 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 9 C -0.14 -4.79 6.58 32.09 0.21 -4.58 16 10 C -0.14 -5.85 6.53 31.89 0.21 -5.64 16 11 C 0.20 10.70 3.36 30.32 0.10 10.80 16 12 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 13 C -0.57 -33.29 8.75 25.60 0.22 -33.06 16 14 H 0.06 3.33 7.52 -2.91 -0.02 3.31 16 15 C 0.02 1.37 5.41 84.66 0.46 1.83 16 16 N -0.90 -56.56 12.91 21.45 0.28 -56.28 16 17 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 O -0.39 -21.13 9.89 -148.98 -1.47 -22.60 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.03 1.16 6.57 -2.39 -0.02 1.15 16 24 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.53 6.37 -2.39 -0.02 1.52 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.08 2.48 8.06 -2.39 -0.02 2.46 16 37 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.06 2.63 7.65 -2.39 -0.02 2.61 16 39 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -67.79 309.90 4.83 -62.96 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.97 Total: 13.66 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.03 Total: -45.20 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.28 Total: -56.28 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.47 Total: -22.60 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.79 4.83 -62.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703986579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.874 kcal (2) G-P(sol) polarization free energy of solvation -67.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds