Wall clock time and date at job start Mon Mar 30 2020 02:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99822 * 2 1 4 4 C 1.50700 * 109.47185 * 270.00130 * 3 2 1 5 5 H 1.07990 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99656 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00063 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99887 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47305 * 60.00322 * 8 6 4 10 10 H 1.48507 * 109.47277 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47304 * 300.00157 * 8 6 4 12 12 C 1.34776 * 119.99739 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99762 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00170 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47140 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47031 * 179.97438 * 15 14 12 17 17 C 1.53515 * 114.16965 * 184.99981 * 16 15 14 18 18 N 1.47481 * 87.93334 * 220.32733 * 17 16 15 19 19 C 1.47488 * 87.83530 * 27.00963 * 18 17 16 20 20 H 1.09001 * 109.46516 * 269.99618 * 1 2 3 21 21 H 1.09000 * 109.46943 * 29.99206 * 1 2 3 22 22 H 1.08999 * 109.47198 * 149.99707 * 1 2 3 23 23 H 1.08995 * 109.47230 * 30.00843 * 3 2 1 24 24 H 1.09007 * 109.46526 * 150.00201 * 3 2 1 25 25 H 0.97000 * 119.99790 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.47034 * 60.00028 * 14 12 2 27 27 H 1.09000 * 109.47002 * 300.00414 * 14 12 2 28 28 H 1.08997 * 109.47056 * 60.00061 * 15 14 12 29 29 H 1.09000 * 109.47122 * 299.99865 * 15 14 12 30 30 H 1.09002 * 113.38857 * 318.07816 * 16 15 14 31 31 H 1.09004 * 113.47747 * 105.56637 * 17 16 15 32 32 H 1.08995 * 113.53124 * 335.10698 * 17 16 15 33 33 H 1.00901 * 110.99857 * 138.69928 * 18 17 16 34 34 H 1.08996 * 113.47304 * 87.75121 * 19 18 17 35 35 H 1.08997 * 113.47652 * 218.22256 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2416 6 6 3.1269 2.8776 -1.6727 7 7 3.5550 3.6171 -0.6730 8 14 3.4375 3.4173 -3.4338 9 1 2.1397 3.5958 -4.1331 10 1 4.1812 4.7027 -3.4337 11 1 4.2393 2.3822 -4.1346 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 6 1.6146 -4.9602 0.0001 17 6 2.5086 -6.2022 0.1222 18 7 1.6398 -6.8596 -0.8718 19 6 1.3243 -5.5191 -1.3999 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8899 -0.5139 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1383 0.5139 25 1 4.0318 4.4431 -0.8502 26 1 0.7584 -2.5298 -0.8902 27 1 0.7590 -2.5302 0.8897 28 1 3.0062 -3.5775 0.8894 29 1 3.0062 -3.5775 -0.8905 30 1 0.7538 -4.9625 0.6688 31 1 2.4720 -6.6685 1.1068 32 1 3.5274 -6.0413 -0.2302 33 1 2.1855 -7.3900 -1.5344 34 1 2.0268 -5.1751 -2.1589 35 1 0.2840 -5.4065 -1.7053 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709478514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:33 Heat of formation + Delta-G solvation = -13.088659 kcal Electronic energy + Delta-G solvation = -15567.099393 eV Core-core repulsion = 12986.848187 eV Total energy + Delta-G solvation = -2580.251206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88764 -38.77046 -34.81470 -33.09927 -32.44438 -28.42594 -27.06203 -25.92822 -25.62699 -23.56022 -21.81197 -19.69318 -18.26211 -16.71647 -16.52369 -15.89092 -15.49082 -15.33916 -14.95233 -14.22579 -14.03452 -13.23290 -12.76175 -12.57735 -12.29204 -12.12935 -11.98174 -11.83521 -11.33118 -11.18529 -11.08295 -10.89582 -10.75831 -10.52259 -10.26087 -10.14793 -9.63160 -9.19615 -8.83372 -8.42547 -7.61020 -6.03377 -4.08252 3.31824 3.36240 3.38329 3.49881 3.97286 4.09134 4.34145 4.45408 4.68103 5.11397 5.18308 5.22986 5.30310 5.37281 5.43898 5.59683 5.61082 5.63903 5.68944 5.84649 5.89844 5.95370 6.02451 6.23134 6.28460 6.44852 7.02983 7.08524 7.46132 7.56986 7.93147 8.24955 8.46247 8.91528 9.14038 9.56818 11.04682 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039270 B = 0.005381 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.850357 B = 5202.076864 C = 5433.862108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.501 3.499 13 O -0.545 6.545 14 C -0.137 4.137 15 C -0.094 4.094 16 C -0.113 4.113 17 C 0.003 3.997 18 N -0.634 5.634 19 C 0.002 3.998 20 H 0.043 0.957 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.264 0.736 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.317 0.683 34 H 0.068 0.932 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 -14.840 0.921 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.337 5.337 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.288 3.712 13 O -0.423 6.423 14 C -0.177 4.177 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.128 4.128 18 N -0.257 5.257 19 C -0.129 4.129 20 H 0.062 0.938 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.654 -14.963 1.376 16.434 hybrid contribution 0.884 0.787 -1.534 1.937 sum -5.770 -14.176 -0.157 15.306 Atomic orbital electron populations 1.21626 0.81519 1.02524 1.00338 1.48184 1.06147 1.07969 1.71428 1.19271 0.92557 0.78256 0.97422 1.21400 1.36522 1.06275 0.92315 0.92586 1.24941 0.95366 0.96394 0.97423 1.69927 1.38357 1.14384 1.30782 0.86558 0.78343 0.77820 0.84682 1.20253 1.21145 1.20219 1.20431 0.88161 0.85274 0.77348 1.90656 1.14051 1.87363 1.50268 1.21669 0.99284 0.93337 1.03398 1.21298 0.97138 0.91031 1.03733 1.22825 0.99246 0.93833 0.97317 1.23641 0.96068 0.94645 0.98419 1.67312 1.33416 1.12068 1.12944 1.23718 1.02373 0.89902 0.96884 0.93826 0.90900 0.92406 0.95101 0.93901 0.92670 0.89621 0.89722 0.90803 0.91111 0.88112 0.89970 0.91436 0.87096 0.91402 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.61 -12.97 2.86 -182.95 -0.52 -13.50 16 3 C 0.24 6.50 5.16 -5.19 -0.03 6.47 16 4 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.50 10.40 7.67 -10.99 -0.08 10.31 16 13 O -0.55 -13.78 15.56 5.56 0.09 -13.69 16 14 C -0.14 -1.94 4.24 -27.88 -0.12 -2.06 16 15 C -0.09 -1.24 4.41 -26.73 -0.12 -1.36 16 16 C -0.11 -1.20 3.99 -90.09 -0.36 -1.56 16 17 C 0.00 0.03 8.20 -7.54 -0.06 -0.04 16 18 N -0.63 -6.46 8.71 -122.62 -1.07 -7.52 16 19 C 0.00 0.02 8.19 -7.53 -0.06 -0.05 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 22 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 23 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 24 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 27 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 28 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.07 1.04 7.77 -51.93 -0.40 0.64 16 30 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.32 2.74 8.91 -39.29 -0.35 2.39 16 34 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -33.23 293.16 -7.61 -40.84 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.60 Total: -1.26 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.64 Total: -0.12 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.85 Total: -47.16 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.23 -7.61 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709478514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.756 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds