Wall clock time and date at job start Mon Mar 30 2020 02:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99822 * 2 1 4 4 C 1.50700 * 109.47185 * 270.00130 * 3 2 1 5 5 H 1.07990 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99656 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00063 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99887 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47305 * 60.00322 * 8 6 4 10 10 H 1.48507 * 109.47277 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47304 * 300.00157 * 8 6 4 12 12 C 1.34776 * 119.99739 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99762 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00170 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47140 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47031 * 179.97438 * 15 14 12 17 17 C 1.53515 * 114.16965 * 184.99981 * 16 15 14 18 18 N 1.47481 * 87.93334 * 220.32733 * 17 16 15 19 19 C 1.47488 * 87.83530 * 27.00963 * 18 17 16 20 20 H 1.09001 * 109.46516 * 269.99618 * 1 2 3 21 21 H 1.09000 * 109.46943 * 29.99206 * 1 2 3 22 22 H 1.08999 * 109.47198 * 149.99707 * 1 2 3 23 23 H 1.08995 * 109.47230 * 30.00843 * 3 2 1 24 24 H 1.09007 * 109.46526 * 150.00201 * 3 2 1 25 25 H 0.97000 * 119.99790 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.47034 * 60.00028 * 14 12 2 27 27 H 1.09000 * 109.47002 * 300.00414 * 14 12 2 28 28 H 1.08997 * 109.47056 * 60.00061 * 15 14 12 29 29 H 1.09000 * 109.47122 * 299.99865 * 15 14 12 30 30 H 1.09002 * 113.38857 * 318.07816 * 16 15 14 31 31 H 1.09004 * 113.47747 * 105.56637 * 17 16 15 32 32 H 1.08995 * 113.53124 * 335.10698 * 17 16 15 33 33 H 1.00901 * 110.99857 * 138.69928 * 18 17 16 34 34 H 1.08996 * 113.47304 * 87.75121 * 19 18 17 35 35 H 1.08997 * 113.47652 * 218.22256 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2416 6 6 3.1269 2.8776 -1.6727 7 7 3.5550 3.6171 -0.6730 8 14 3.4375 3.4173 -3.4338 9 1 2.1397 3.5958 -4.1331 10 1 4.1812 4.7027 -3.4337 11 1 4.2393 2.3822 -4.1346 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 6 1.6146 -4.9602 0.0001 17 6 2.5086 -6.2022 0.1222 18 7 1.6398 -6.8596 -0.8718 19 6 1.3243 -5.5191 -1.3999 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8899 -0.5139 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1383 0.5139 25 1 4.0318 4.4431 -0.8502 26 1 0.7584 -2.5298 -0.8902 27 1 0.7590 -2.5302 0.8897 28 1 3.0062 -3.5775 0.8894 29 1 3.0062 -3.5775 -0.8905 30 1 0.7538 -4.9625 0.6688 31 1 2.4720 -6.6685 1.1068 32 1 3.5274 -6.0413 -0.2302 33 1 2.1855 -7.3900 -1.5344 34 1 2.0268 -5.1751 -2.1589 35 1 0.2840 -5.4065 -1.7053 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709478514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:33 Heat of formation + Delta-G solvation = -38.236740 kcal Electronic energy + Delta-G solvation = -15568.189896 eV Core-core repulsion = 12986.848187 eV Total energy + Delta-G solvation = -2581.341709 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92273 -40.20344 -36.59581 -34.80234 -34.04103 -30.16070 -28.34502 -27.18997 -26.68691 -25.21185 -23.28997 -20.54056 -19.82824 -18.70233 -17.93712 -17.10825 -16.87669 -16.68424 -16.37658 -15.95349 -15.20367 -14.53127 -14.23998 -13.95389 -13.63187 -13.50297 -13.43627 -13.23337 -12.91404 -12.81883 -12.52378 -12.30092 -12.19695 -12.12199 -11.72466 -11.67518 -11.14661 -10.65018 -10.54227 -9.96047 -9.39500 -8.22865 -6.38361 1.35905 1.40329 1.47780 1.89121 2.33432 2.49745 3.06254 3.30355 3.47457 3.72881 3.90005 4.27757 4.33839 4.43548 4.47091 4.49741 4.66370 4.74418 4.78990 4.83080 4.87987 4.97768 5.00942 5.06987 5.13284 5.21846 5.26377 5.45451 5.56349 5.85536 6.05916 6.30846 6.69457 6.82936 7.28126 7.52683 8.84014 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039270 B = 0.005381 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.850357 B = 5202.076864 C = 5433.862108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.257 3.743 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.488 3.512 13 O -0.604 6.604 14 C -0.120 4.120 15 C -0.087 4.087 16 C -0.105 4.105 17 C 0.002 3.998 18 N -0.640 5.640 19 C 0.002 3.998 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.022 0.978 24 H -0.005 1.005 25 H 0.267 0.733 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.326 0.674 34 H 0.065 0.935 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -16.098 -0.073 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.135 3.865 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.278 3.722 13 O -0.486 6.486 14 C -0.160 4.160 15 C -0.126 4.126 16 C -0.124 4.124 17 C -0.129 4.129 18 N -0.265 5.265 19 C -0.128 4.128 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.116 0.884 23 H 0.040 0.960 24 H 0.013 0.987 25 H 0.076 0.924 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.620 -16.244 0.385 18.394 hybrid contribution 1.483 1.161 -1.168 2.217 sum -7.137 -15.083 -0.783 16.704 Atomic orbital electron populations 1.21940 0.77794 1.04047 1.02588 1.48248 1.08491 1.06473 1.71316 1.18740 0.91048 0.80707 0.95990 1.21685 1.36925 1.06615 0.93042 0.92847 1.25894 0.94853 0.96405 1.02110 1.70052 1.38872 1.14834 1.33182 0.85450 0.78887 0.77351 0.79008 1.18335 1.20282 1.20346 1.21667 0.87932 0.86972 0.75614 1.90623 1.16945 1.88324 1.52702 1.21682 0.99085 0.89080 1.06116 1.21207 0.96932 0.92386 1.02063 1.22751 0.99374 0.92143 0.98146 1.23656 0.95990 0.94392 0.98823 1.67303 1.33692 1.12173 1.13299 1.23726 1.02888 0.89749 0.96428 0.91148 0.91854 0.88427 0.96016 0.98683 0.92376 0.86982 0.86352 0.92368 0.93163 0.86725 0.89335 0.91561 0.86151 0.91650 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.24 127.77 1.31 3.59 16 2 N -0.61 -26.22 2.86 -851.12 -2.43 -28.65 16 3 C 0.26 14.17 5.16 85.63 0.44 14.61 16 4 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 5 H 0.05 3.07 7.81 -2.92 -0.02 3.05 16 6 C 0.01 0.36 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 8 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 C 0.49 20.20 7.67 87.66 0.67 20.87 16 13 O -0.60 -31.71 15.56 -3.03 -0.05 -31.76 16 14 C -0.12 -3.10 4.24 29.85 0.13 -2.97 16 15 C -0.09 -2.20 4.41 30.59 0.14 -2.07 16 16 C -0.11 -1.96 3.99 -10.45 -0.04 -2.00 16 17 C 0.00 0.03 8.20 83.58 0.69 0.72 16 18 N -0.64 -11.53 8.71 -541.87 -4.72 -16.25 16 19 C 0.00 0.04 8.19 83.58 0.68 0.73 16 20 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 22 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 23 H 0.02 1.21 8.07 -2.39 -0.02 1.20 16 24 H 0.00 -0.32 7.42 -2.38 -0.02 -0.33 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.11 2.37 7.40 -2.39 -0.02 2.35 16 27 H 0.12 2.33 8.11 -2.39 -0.02 2.31 16 28 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 29 H 0.05 1.47 7.77 -2.39 -0.02 1.45 16 30 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.33 4.98 8.91 -89.69 -0.80 4.18 16 34 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -74.97 293.16 0.09 -74.88 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.27 Total: 8.63 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.72 Total: 2.67 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -6.87 Total: -101.64 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.76 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.97 0.09 -74.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709478514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.639 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds