Wall clock time and date at job start Mon Mar 30 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47099 * 2 1 4 4 H 1.09004 * 109.47270 * 53.15772 * 3 2 1 5 5 O 1.42899 * 109.47504 * 293.15139 * 3 2 1 6 6 C 1.42902 * 113.99637 * 96.26232 * 5 3 2 7 7 H 1.08996 * 109.47520 * 321.04819 * 6 5 3 8 8 C 1.52999 * 109.46939 * 81.05303 * 6 5 3 9 9 C 1.53001 * 109.47004 * 201.04743 * 6 5 3 10 10 C 1.50700 * 109.47126 * 61.37402 * 9 6 5 11 11 H 1.07993 * 120.00055 * 4.69436 * 10 9 6 12 12 C 1.37877 * 119.99680 * 184.70229 * 10 9 6 13 13 N 1.31508 * 120.00493 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99637 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47382 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47243 * 119.99751 * 14 12 10 17 17 H 1.48500 * 109.47075 * 239.99226 * 14 12 10 18 18 C 1.53005 * 109.47056 * 173.15518 * 3 2 1 19 19 C 1.53783 * 113.61159 * 277.49973 * 18 3 2 20 20 C 1.53780 * 87.07947 * 220.01869 * 19 18 3 21 21 C 1.53773 * 87.08402 * 25.43160 * 20 19 18 22 22 H 1.09006 * 109.47481 * 54.99947 * 1 2 3 23 23 H 1.09004 * 109.47189 * 294.99718 * 1 2 3 24 24 H 1.09002 * 109.47722 * 174.99856 * 1 2 3 25 25 H 1.08995 * 109.47117 * 120.00067 * 2 1 3 26 26 H 1.09000 * 109.46664 * 239.99854 * 2 1 3 27 27 H 1.08996 * 109.47410 * 59.99449 * 8 6 5 28 28 H 1.08998 * 109.47505 * 180.02562 * 8 6 5 29 29 H 1.09011 * 109.46839 * 299.99325 * 8 6 5 30 30 H 1.08995 * 109.47417 * 181.37480 * 9 6 5 31 31 H 1.09005 * 109.47105 * 301.37578 * 9 6 5 32 32 H 0.97004 * 120.00525 * 180.02562 * 13 12 10 33 33 H 1.09002 * 112.85096 * 48.79871 * 18 3 2 34 34 H 1.08999 * 113.61682 * 334.56208 * 19 18 3 35 35 H 1.08998 * 113.61703 * 105.47167 * 19 18 3 36 36 H 1.09000 * 113.61281 * 270.88421 * 20 19 18 37 37 H 1.08998 * 113.61505 * 139.98404 * 20 19 18 38 38 H 1.09000 * 113.61661 * 220.02031 * 21 20 19 39 39 H 1.09001 * 113.61708 * 89.11786 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5801 1.9904 0.8225 5 8 1.6994 2.0682 -1.2387 6 6 0.4982 2.8407 -1.1886 7 1 -0.2400 2.3253 -0.5743 8 6 0.7991 4.2124 -0.5813 9 6 -0.0524 3.0198 -2.6049 10 6 -0.3803 1.6706 -3.1907 11 1 -0.2847 0.7814 -2.5853 12 6 -0.8022 1.5715 -4.4996 13 7 -0.9190 2.6543 -5.2366 14 14 -1.2094 -0.1009 -5.2255 15 1 -0.9981 -1.1515 -4.1975 16 1 -2.6273 -0.1172 -5.6665 17 1 -0.3259 -0.3634 -6.3898 18 6 3.5603 1.4459 0.1719 19 6 4.0149 1.3190 1.6355 20 6 5.1030 2.3542 1.3049 21 6 4.1756 2.8551 0.1853 22 1 -0.3634 0.5895 -0.8418 23 1 -0.3634 0.4343 0.9314 24 1 -0.3634 -1.0237 -0.0896 25 1 1.8933 -0.5138 0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.5373 4.7278 -1.1956 28 1 -0.1171 4.8016 -0.5426 29 1 1.1914 4.0848 0.4277 30 1 -0.9551 3.6296 -2.5694 31 1 0.6953 3.5135 -3.2257 32 1 -1.2162 2.5846 -6.1574 33 1 4.0643 0.7556 -0.5046 34 1 3.2772 1.6754 2.3544 35 1 4.4105 0.3347 1.8861 36 1 6.0297 1.9120 0.9392 37 1 5.2654 3.0851 2.0971 38 1 4.7008 3.1110 -0.7350 39 1 3.4818 3.6315 0.5076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719704719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:50 Heat of formation + Delta-G solvation = -54.004732 kcal Electronic energy + Delta-G solvation = -16696.482595 eV Core-core repulsion = 14217.997478 eV Total energy + Delta-G solvation = -2478.485117 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30507 -37.11678 -33.49897 -32.48714 -30.82403 -27.63940 -27.14231 -25.44216 -23.22982 -22.97047 -20.58749 -20.02105 -19.17991 -16.53736 -16.18769 -15.24360 -15.00116 -14.47703 -14.11474 -13.57269 -13.16475 -12.74378 -12.34333 -12.09015 -11.94652 -11.92559 -11.69510 -11.47530 -11.25249 -11.21451 -11.03207 -10.71455 -10.51641 -10.40257 -10.32150 -10.12481 -9.94979 -9.92041 -9.06865 -8.91807 -8.41942 -8.26444 -5.91062 -3.90238 3.36549 3.44029 3.48414 4.35207 4.54020 4.75525 4.84746 4.96137 5.17137 5.44932 5.50251 5.50580 5.62222 5.74199 5.78558 5.81478 5.87364 5.92854 5.96387 6.04728 6.10588 6.15840 6.24787 6.32693 6.35952 6.41638 6.48327 6.60547 6.73802 6.81211 6.91936 7.02702 7.62141 7.77668 8.09203 8.31590 8.53661 9.15140 9.71842 11.20948 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.007583 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.645492 B = 3691.572742 C = 4028.106377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.137 4.137 3 C 0.097 3.903 4 H 0.050 0.950 5 O -0.352 6.352 6 C 0.086 3.914 7 H 0.050 0.950 8 C -0.176 4.176 9 C 0.025 3.975 10 C -0.502 4.502 11 H 0.064 0.936 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.106 4.106 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.127 4.127 22 H 0.092 0.908 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 -1.505 13.133 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C 0.038 3.962 4 H 0.068 0.932 5 O -0.271 6.271 6 C 0.029 3.971 7 H 0.068 0.932 8 C -0.233 4.233 9 C -0.012 4.012 10 C -0.541 4.541 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.125 4.125 19 C -0.171 4.171 20 C -0.182 4.182 21 C -0.164 4.164 22 H 0.110 0.890 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.637 -1.467 12.792 14.971 hybrid contribution -0.407 -0.887 -0.289 1.018 sum 7.230 -2.353 12.503 14.633 Atomic orbital electron populations 1.22111 0.95824 1.02040 1.02823 1.21943 0.96614 0.97438 1.01483 1.21976 0.93080 0.92832 0.88291 0.93208 1.88089 1.42867 1.66018 1.30106 1.22507 0.85589 0.88455 1.00597 0.93194 1.22430 1.01603 0.99696 0.99581 1.19209 0.95654 0.97683 0.88640 1.21274 1.42877 0.93269 0.96639 0.91838 1.24986 0.96125 0.96205 0.97290 1.69968 1.48230 1.27544 1.08274 0.86604 0.77751 0.84855 0.79222 1.19743 1.21246 1.21162 1.22641 0.95209 0.98211 0.96426 1.22921 0.98449 0.99221 0.96520 1.22844 0.97446 0.98834 0.99110 1.22786 0.98209 0.96916 0.98505 0.88963 0.93944 0.93448 0.92585 0.91303 0.92409 0.92451 0.94245 0.95720 0.95471 0.93250 0.89032 0.90383 0.91740 0.90490 0.91903 0.91456 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.02 37.16 0.34 -2.57 16 2 C -0.14 -2.21 5.63 -26.74 -0.15 -2.36 16 3 C 0.10 1.60 1.83 -26.73 -0.05 1.55 16 4 H 0.05 0.79 6.80 -51.93 -0.35 0.44 16 5 O -0.35 -7.36 8.98 -35.23 -0.32 -7.68 16 6 C 0.09 1.81 1.91 -26.73 -0.05 1.76 16 7 H 0.05 1.03 5.59 -51.93 -0.29 0.74 16 8 C -0.18 -3.11 9.39 37.16 0.35 -2.77 16 9 C 0.02 0.65 4.71 -27.88 -0.13 0.52 16 10 C -0.50 -14.19 8.66 -34.44 -0.30 -14.49 16 11 H 0.06 1.75 5.53 -52.49 -0.29 1.46 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 14 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 C -0.11 -1.51 3.35 -89.80 -0.30 -1.81 16 19 C -0.13 -1.52 7.63 -25.92 -0.20 -1.72 16 20 C -0.14 -1.58 8.08 -25.92 -0.21 -1.79 16 21 C -0.13 -1.71 7.44 -25.92 -0.19 -1.90 16 22 H 0.09 1.88 3.36 -51.93 -0.17 1.70 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.61 7.14 -51.92 -0.37 0.24 16 30 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -29.98 304.62 -7.94 -37.91 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.93 Total: -1.15 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -0.99 Total: -24.11 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.32 Total: -7.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.98 -7.94 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719704719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.093 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds