Wall clock time and date at job start Mon Mar 30 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47099 * 2 1 4 4 H 1.09004 * 109.47270 * 53.15772 * 3 2 1 5 5 O 1.42899 * 109.47504 * 293.15139 * 3 2 1 6 6 C 1.42902 * 113.99637 * 96.26232 * 5 3 2 7 7 H 1.08996 * 109.47520 * 321.04819 * 6 5 3 8 8 C 1.52999 * 109.46939 * 81.05303 * 6 5 3 9 9 C 1.53001 * 109.47004 * 201.04743 * 6 5 3 10 10 C 1.50700 * 109.47126 * 61.37402 * 9 6 5 11 11 H 1.07993 * 120.00055 * 4.69436 * 10 9 6 12 12 C 1.37877 * 119.99680 * 184.70229 * 10 9 6 13 13 N 1.31508 * 120.00493 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99637 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47382 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47243 * 119.99751 * 14 12 10 17 17 H 1.48500 * 109.47075 * 239.99226 * 14 12 10 18 18 C 1.53005 * 109.47056 * 173.15518 * 3 2 1 19 19 C 1.53783 * 113.61159 * 277.49973 * 18 3 2 20 20 C 1.53780 * 87.07947 * 220.01869 * 19 18 3 21 21 C 1.53773 * 87.08402 * 25.43160 * 20 19 18 22 22 H 1.09006 * 109.47481 * 54.99947 * 1 2 3 23 23 H 1.09004 * 109.47189 * 294.99718 * 1 2 3 24 24 H 1.09002 * 109.47722 * 174.99856 * 1 2 3 25 25 H 1.08995 * 109.47117 * 120.00067 * 2 1 3 26 26 H 1.09000 * 109.46664 * 239.99854 * 2 1 3 27 27 H 1.08996 * 109.47410 * 59.99449 * 8 6 5 28 28 H 1.08998 * 109.47505 * 180.02562 * 8 6 5 29 29 H 1.09011 * 109.46839 * 299.99325 * 8 6 5 30 30 H 1.08995 * 109.47417 * 181.37480 * 9 6 5 31 31 H 1.09005 * 109.47105 * 301.37578 * 9 6 5 32 32 H 0.97004 * 120.00525 * 180.02562 * 13 12 10 33 33 H 1.09002 * 112.85096 * 48.79871 * 18 3 2 34 34 H 1.08999 * 113.61682 * 334.56208 * 19 18 3 35 35 H 1.08998 * 113.61703 * 105.47167 * 19 18 3 36 36 H 1.09000 * 113.61281 * 270.88421 * 20 19 18 37 37 H 1.08998 * 113.61505 * 139.98404 * 20 19 18 38 38 H 1.09000 * 113.61661 * 220.02031 * 21 20 19 39 39 H 1.09001 * 113.61708 * 89.11786 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5801 1.9904 0.8225 5 8 1.6994 2.0682 -1.2387 6 6 0.4982 2.8407 -1.1886 7 1 -0.2400 2.3253 -0.5743 8 6 0.7991 4.2124 -0.5813 9 6 -0.0524 3.0198 -2.6049 10 6 -0.3803 1.6706 -3.1907 11 1 -0.2847 0.7814 -2.5853 12 6 -0.8022 1.5715 -4.4996 13 7 -0.9190 2.6543 -5.2366 14 14 -1.2094 -0.1009 -5.2255 15 1 -0.9981 -1.1515 -4.1975 16 1 -2.6273 -0.1172 -5.6665 17 1 -0.3259 -0.3634 -6.3898 18 6 3.5603 1.4459 0.1719 19 6 4.0149 1.3190 1.6355 20 6 5.1030 2.3542 1.3049 21 6 4.1756 2.8551 0.1853 22 1 -0.3634 0.5895 -0.8418 23 1 -0.3634 0.4343 0.9314 24 1 -0.3634 -1.0237 -0.0896 25 1 1.8933 -0.5138 0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.5373 4.7278 -1.1956 28 1 -0.1171 4.8016 -0.5426 29 1 1.1914 4.0848 0.4277 30 1 -0.9551 3.6296 -2.5694 31 1 0.6953 3.5135 -3.2257 32 1 -1.2162 2.5846 -6.1574 33 1 4.0643 0.7556 -0.5046 34 1 3.2772 1.6754 2.3544 35 1 4.4105 0.3347 1.8861 36 1 6.0297 1.9120 0.9392 37 1 5.2654 3.0851 2.0971 38 1 4.7008 3.1110 -0.7350 39 1 3.4818 3.6315 0.5076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719704719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:50 Heat of formation + Delta-G solvation = -70.270803 kcal Electronic energy + Delta-G solvation = -16697.187944 eV Core-core repulsion = 14217.997478 eV Total energy + Delta-G solvation = -2479.190466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52080 -38.47174 -35.33992 -34.16685 -32.54750 -29.30351 -28.62998 -26.41999 -25.13439 -24.22049 -21.88890 -21.74454 -20.21766 -18.52180 -17.82601 -16.69441 -16.25447 -16.00562 -15.64680 -15.01198 -14.82161 -14.04632 -13.82551 -13.51819 -13.36031 -13.32858 -13.22798 -13.03194 -12.73284 -12.69298 -12.51045 -12.45360 -12.35509 -11.91789 -11.65881 -11.36164 -11.24443 -11.14122 -10.88384 -10.74277 -10.53223 -9.90467 -8.14139 -6.20241 1.38098 1.39334 1.51784 2.43624 2.97786 3.21996 3.73280 3.84505 3.96250 4.08808 4.22210 4.27534 4.35836 4.37198 4.44684 4.52319 4.60646 4.82698 4.87896 4.90675 4.93150 5.00090 5.04672 5.10664 5.13264 5.19203 5.26746 5.27364 5.34417 5.39130 5.45811 5.59959 5.65639 5.68144 5.89987 6.31105 6.80240 6.95313 7.46149 8.98726 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.007583 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.645492 B = 3691.572742 C = 4028.106377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.135 4.135 3 C 0.093 3.907 4 H 0.062 0.938 5 O -0.381 6.381 6 C 0.095 3.905 7 H 0.057 0.943 8 C -0.167 4.167 9 C 0.027 3.973 10 C -0.513 4.513 11 H 0.069 0.931 12 C -0.004 4.004 13 N -0.939 5.939 14 Si 0.955 3.045 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.283 1.283 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.136 4.136 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.007 0.993 31 H -0.010 1.010 32 H 0.260 0.740 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -2.752 15.358 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.172 4.172 3 C 0.035 3.965 4 H 0.080 0.920 5 O -0.301 6.301 6 C 0.038 3.962 7 H 0.074 0.926 8 C -0.224 4.224 9 C -0.010 4.010 10 C -0.551 4.551 11 H 0.087 0.913 12 C -0.201 4.201 13 N -0.581 5.581 14 Si 0.780 3.220 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.209 1.209 18 C -0.134 4.134 19 C -0.158 4.158 20 C -0.170 4.170 21 C -0.173 4.173 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.025 0.975 31 H 0.009 0.991 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.275 -2.719 15.036 17.377 hybrid contribution -0.589 -0.490 -0.974 1.238 sum 7.686 -3.209 14.063 16.344 Atomic orbital electron populations 1.22066 0.96455 1.02003 1.02220 1.21943 0.96012 0.97303 1.01977 1.22246 0.94787 0.92726 0.86754 0.91981 1.88033 1.42353 1.66539 1.33143 1.22193 0.86132 0.90562 0.97316 0.92554 1.22318 1.01914 0.97530 1.00668 1.19088 0.94073 0.96233 0.91564 1.21678 1.42096 0.94316 0.96989 0.91332 1.25885 0.96188 1.00063 0.97937 1.70102 1.49427 1.29873 1.08669 0.85542 0.77734 0.80303 0.78385 1.18678 1.20339 1.20949 1.22707 0.93383 0.98599 0.98713 1.22891 0.98431 1.00272 0.94203 1.22800 0.97198 0.98784 0.98193 1.22832 0.98928 0.96474 0.99090 0.92629 0.91908 0.92652 0.89367 0.93411 0.93329 0.91647 0.91313 0.97518 0.99134 0.93131 0.90077 0.89403 0.90203 0.89678 0.90288 0.93004 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 9.02 71.98 0.65 -4.86 16 2 C -0.13 -4.10 5.63 30.59 0.17 -3.93 16 3 C 0.09 2.92 1.83 30.59 0.06 2.98 16 4 H 0.06 1.80 6.80 -2.38 -0.02 1.78 16 5 O -0.38 -16.01 8.98 -148.98 -1.34 -17.34 16 6 C 0.10 4.04 1.91 30.59 0.06 4.10 16 7 H 0.06 2.30 5.59 -2.39 -0.01 2.29 16 8 C -0.17 -5.79 9.39 71.98 0.68 -5.12 16 9 C 0.03 1.49 4.71 29.85 0.14 1.63 16 10 C -0.51 -29.68 8.66 25.60 0.22 -29.46 16 11 H 0.07 3.83 5.53 -2.91 -0.02 3.82 16 12 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 13 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 14 Si 0.95 45.96 29.54 68.60 2.03 47.99 16 15 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 17 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 18 C -0.12 -3.08 3.35 -10.27 -0.03 -3.11 16 19 C -0.12 -2.31 7.63 31.12 0.24 -2.07 16 20 C -0.13 -2.49 8.08 31.12 0.25 -2.23 16 21 C -0.14 -3.46 7.44 31.12 0.23 -3.23 16 22 H 0.05 2.23 3.36 -2.38 -0.01 2.22 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.97 7.14 -2.38 -0.02 1.95 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H -0.01 -0.60 8.14 -2.38 -0.02 -0.61 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.09 1.55 7.96 -2.39 -0.02 1.53 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.96 7.86 -2.39 -0.02 1.94 16 Total: -1.00 -65.97 304.62 5.08 -60.89 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.99 Total: 12.08 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.12 Total: -45.11 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.28 Total: -58.51 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.34 Total: -17.34 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -65.97 5.08 -60.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719704719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.380 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds