Wall clock time and date at job start Mon Mar 30 2020 03:55:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47204 * 2 1
4 4 H 1.09001 * 109.47132 * 55.76332 * 3 2 1
5 5 O 1.42901 * 109.47230 * 295.76989 * 3 2 1
6 6 C 1.42900 * 114.00702 * 144.03261 * 5 3 2
7 7 H 1.08998 * 109.46606 * 36.35849 * 6 5 3
8 8 C 1.52998 * 109.47337 * 276.36001 * 6 5 3
9 9 C 1.52999 * 109.47084 * 156.35636 * 6 5 3
10 10 C 1.50702 * 109.47147 * 296.37636 * 9 6 5
11 11 H 1.07997 * 120.00251 * 5.14946 * 10 9 6
12 12 C 1.37880 * 119.99794 * 185.14636 * 10 9 6
13 13 N 1.31510 * 119.99833 * 0.02562 * 12 10 9
14 14 Si 1.86797 * 119.99978 * 180.02562 * 12 10 9
15 15 H 1.48505 * 109.47167 * 59.99958 * 14 12 10
16 16 H 1.48494 * 109.47291 * 180.02562 * 14 12 10
17 17 H 1.48503 * 109.47160 * 300.00258 * 14 12 10
18 18 C 1.52999 * 109.47493 * 175.76669 * 3 2 1
19 19 C 1.53779 * 113.61256 * 283.04491 * 18 3 2
20 20 C 1.53784 * 87.07686 * 220.01467 * 19 18 3
21 21 C 1.53775 * 87.08302 * 25.43626 * 20 19 18
22 22 H 1.08998 * 109.46955 * 55.13354 * 1 2 3
23 23 H 1.09001 * 109.47437 * 295.13160 * 1 2 3
24 24 H 1.09005 * 109.46977 * 175.13137 * 1 2 3
25 25 H 1.08998 * 109.47008 * 119.99682 * 2 1 3
26 26 H 1.08994 * 109.47269 * 239.99731 * 2 1 3
27 27 H 1.08998 * 109.47205 * 64.99772 * 8 6 5
28 28 H 1.08996 * 109.47400 * 185.00093 * 8 6 5
29 29 H 1.09003 * 109.46936 * 305.00330 * 8 6 5
30 30 H 1.08997 * 109.46944 * 56.37692 * 9 6 5
31 31 H 1.09004 * 109.46972 * 176.38049 * 9 6 5
32 32 H 0.97005 * 119.99740 * 179.97438 * 13 12 10
33 33 H 1.09004 * 112.84687 * 54.35045 * 18 3 2
34 34 H 1.09002 * 113.61709 * 334.56117 * 19 18 3
35 35 H 1.08994 * 113.61466 * 105.47037 * 19 18 3
36 36 H 1.09001 * 113.61845 * 270.88134 * 20 19 18
37 37 H 1.09005 * 113.68929 * 139.98863 * 20 19 18
38 38 H 1.09002 * 113.61149 * 220.02016 * 21 20 19
39 39 H 1.08994 * 113.62294 * 89.11410 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6160 1.9778 0.8496
5 8 1.6466 2.0869 -1.2133
6 6 1.3120 3.4672 -1.0564
7 1 1.9700 3.9184 -0.3138
8 6 -0.1408 3.5904 -0.5924
9 6 1.4828 4.1887 -2.3948
10 6 2.9313 4.1441 -2.8082
11 1 3.6428 3.5803 -2.2231
12 6 3.3483 4.8230 -3.9335
13 7 2.4820 5.5098 -4.6457
14 14 5.1436 4.7671 -4.4464
15 1 5.5399 3.3602 -4.7087
16 1 5.3315 5.5729 -5.6794
17 1 5.9868 5.3241 -3.3583
18 6 3.5663 1.4439 0.1065
19 6 4.0850 1.1603 1.5261
20 6 5.1510 2.2380 1.2670
21 6 4.1725 2.8498 0.2506
22 1 -0.3633 0.5875 -0.8432
23 1 -0.3634 0.4364 0.9304
24 1 -0.3633 -1.0240 -0.0872
25 1 1.8933 -0.5138 0.8900
26 1 1.8933 -0.5138 -0.8899
27 1 -0.2430 3.1541 0.4012
28 1 -0.4233 4.6425 -0.5582
29 1 -0.7909 3.0620 -1.2898
30 1 0.8733 3.6971 -3.1529
31 1 1.1664 5.2266 -2.2910
32 1 2.7754 5.9877 -5.4372
33 1 4.0448 0.8389 -0.6637
34 1 3.3769 1.4263 2.3110
35 1 4.4973 0.1588 1.6483
36 1 6.0638 1.8496 0.8151
37 1 5.3441 2.8788 2.1273
38 1 4.6555 3.2121 -0.6569
39 1 3.4883 3.5777 0.6867
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000719704720.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:55:53
Heat of formation + Delta-G solvation = -72.271005 kcal
Electronic energy + Delta-G solvation = -16800.829021 eV
Core-core repulsion = 14321.551819 eV
Total energy + Delta-G solvation = -2479.277202 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.167 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.58715 -38.20249 -35.53828 -34.23587 -32.41952 -29.27686 -28.55625 -26.45481
-25.17882 -24.21696 -21.99764 -21.65095 -20.16680 -18.43083 -17.75988 -16.63876
-16.55436 -15.98946 -15.48309 -15.06471 -14.55316 -14.31625 -13.76777 -13.70958
-13.34486 -13.29095 -13.16363 -13.00195 -12.82816 -12.65248 -12.48095 -12.45050
-12.12016 -11.87686 -11.72610 -11.50713 -11.38376 -11.15376 -10.83272 -10.75252
-10.51918 -9.88359 -8.13888 -6.19543 1.37377 1.40370 1.47583 2.43135
3.00542 3.22567 3.72854 3.84493 3.91367 4.04976 4.21581 4.26872
4.35522 4.42283 4.49926 4.53487 4.61036 4.84130 4.85878 4.90722
4.96569 5.05189 5.05380 5.10645 5.13738 5.22973 5.25029 5.27567
5.32508 5.43677 5.50629 5.58162 5.64550 5.65703 5.88137 6.33563
6.80029 6.95021 7.46481 8.98654
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022123 B = 0.009722 C = 0.007620
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.373694 B = 2879.244492 C = 3673.711491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.116 4.116
3 C 0.092 3.908
4 H 0.061 0.939
5 O -0.382 6.382
6 C 0.100 3.900
7 H 0.051 0.949
8 C -0.166 4.166
9 C 0.029 3.971
10 C -0.513 4.513
11 H 0.069 0.931
12 C -0.004 4.004
13 N -0.939 5.939
14 Si 0.953 3.047
15 H -0.273 1.273
16 H -0.285 1.285
17 H -0.266 1.266
18 C -0.132 4.132
19 C -0.115 4.115
20 C -0.136 4.136
21 C -0.145 4.145
22 H 0.039 0.961
23 H 0.060 0.940
24 H 0.065 0.935
25 H 0.094 0.906
26 H 0.053 0.947
27 H 0.068 0.932
28 H 0.062 0.938
29 H 0.050 0.950
30 H -0.015 1.015
31 H 0.009 0.991
32 H 0.260 0.740
33 H 0.075 0.925
34 H 0.091 0.909
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.077 0.923
38 H 0.042 0.958
39 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.648 -9.472 14.243 17.117
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.153 4.153
3 C 0.035 3.965
4 H 0.079 0.921
5 O -0.302 6.302
6 C 0.043 3.957
7 H 0.069 0.931
8 C -0.224 4.224
9 C -0.008 4.008
10 C -0.551 4.551
11 H 0.087 0.913
12 C -0.200 4.200
13 N -0.581 5.581
14 Si 0.778 3.222
15 H -0.198 1.198
16 H -0.210 1.210
17 H -0.191 1.191
18 C -0.150 4.150
19 C -0.152 4.152
20 C -0.174 4.174
21 C -0.182 4.182
22 H 0.058 0.942
23 H 0.079 0.921
24 H 0.084 0.916
25 H 0.112 0.888
26 H 0.072 0.928
27 H 0.087 0.913
28 H 0.081 0.919
29 H 0.069 0.931
30 H 0.004 0.996
31 H 0.027 0.973
32 H 0.069 0.931
33 H 0.094 0.906
34 H 0.110 0.890
35 H 0.100 0.900
36 H 0.098 0.902
37 H 0.096 0.904
38 H 0.061 0.939
39 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.624 -9.460 13.920 16.842
hybrid contribution 0.703 0.592 -0.874 1.268
sum 1.327 -8.869 13.046 15.831
Atomic orbital electron populations
1.21707 0.95301 1.01844 1.01580 1.21615 0.96631 0.94487 1.02607
1.22256 0.92779 0.94209 0.87287 0.92080 1.87994 1.86943 1.23083
1.32169 1.22124 0.94096 0.81923 0.97593 0.93072 1.22303 0.96944
1.01928 1.01180 1.19077 0.96117 0.93635 0.91998 1.21651 0.95115
1.28686 1.09673 0.91288 1.25877 1.01687 0.95546 0.96930 1.70089
1.36020 1.34070 1.17881 0.85684 0.80601 0.78146 0.77755 1.19832
1.21012 1.19067 1.23015 0.95886 0.97487 0.98654 1.22832 0.97900
0.99527 0.94939 1.22827 0.97177 0.98471 0.98900 1.22946 0.99226
0.96797 0.99242 0.94177 0.92118 0.91633 0.88766 0.92777 0.91266
0.91933 0.93059 0.99640 0.97315 0.93145 0.90649 0.89031 0.89955
0.90206 0.90441 0.93915 0.90975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.56 9.86 71.98 0.71 -2.85 16
2 C -0.12 -2.98 5.62 30.59 0.17 -2.80 16
3 C 0.09 2.87 1.74 30.59 0.05 2.93 16
4 H 0.06 1.76 7.12 -2.39 -0.02 1.74 16
5 O -0.38 -15.89 8.73 -148.98 -1.30 -17.19 16
6 C 0.10 4.26 2.24 30.59 0.07 4.33 16
7 H 0.05 2.13 5.54 -2.39 -0.01 2.12 16
8 C -0.17 -5.80 9.39 71.98 0.68 -5.12 16
9 C 0.03 1.57 4.69 29.85 0.14 1.71 16
10 C -0.51 -29.79 8.85 25.60 0.23 -29.56 16
11 H 0.07 3.86 5.58 -2.91 -0.02 3.85 16
12 C 0.00 -0.24 5.46 84.66 0.46 0.22 16
13 N -0.94 -58.82 13.29 21.45 0.28 -58.53 16
14 Si 0.95 46.07 29.54 68.60 2.03 48.09 16
15 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16
16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
18 C -0.13 -3.96 3.35 -10.27 -0.03 -4.00 16
19 C -0.11 -2.50 7.40 31.12 0.23 -2.27 16
20 C -0.14 -3.33 8.08 31.12 0.25 -3.08 16
21 C -0.14 -4.76 6.35 31.12 0.20 -4.56 16
22 H 0.04 1.17 7.67 -2.39 -0.02 1.16 16
23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16
25 H 0.09 1.87 7.94 -2.39 -0.02 1.85 16
26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
27 H 0.07 1.98 7.64 -2.39 -0.02 1.96 16
28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
30 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16
31 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16
32 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16
33 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16
34 H 0.09 1.75 8.04 -2.39 -0.02 1.73 16
35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16
38 H 0.04 1.69 6.48 -2.39 -0.02 1.67 16
39 H 0.07 2.41 6.48 -2.39 -0.02 2.39 16
Total: -1.00 -66.22 306.28 5.15 -61.07
By element:
Atomic # 1 Polarization: 10.63 SS G_CDS: 0.98 Total: 11.61 kcal
Atomic # 6 Polarization: -48.21 SS G_CDS: 3.15 Total: -45.06 kcal
Atomic # 7 Polarization: -58.82 SS G_CDS: 0.28 Total: -58.53 kcal
Atomic # 8 Polarization: -15.89 SS G_CDS: -1.30 Total: -17.19 kcal
Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal
Total: -66.22 5.15 -61.07 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719704720.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.197 kcal
(2) G-P(sol) polarization free energy of solvation -66.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.271 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds