Wall clock time and date at job start Mon Mar 30 2020 03:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09001 * 109.47132 * 55.76332 * 3 2 1 5 5 O 1.42901 * 109.47230 * 295.76989 * 3 2 1 6 6 C 1.42900 * 114.00702 * 144.03261 * 5 3 2 7 7 H 1.08998 * 109.46606 * 36.35849 * 6 5 3 8 8 C 1.52998 * 109.47337 * 276.36001 * 6 5 3 9 9 C 1.52999 * 109.47084 * 156.35636 * 6 5 3 10 10 C 1.50702 * 109.47147 * 296.37636 * 9 6 5 11 11 H 1.07997 * 120.00251 * 5.14946 * 10 9 6 12 12 C 1.37880 * 119.99794 * 185.14636 * 10 9 6 13 13 N 1.31510 * 119.99833 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99978 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47167 * 59.99958 * 14 12 10 16 16 H 1.48494 * 109.47291 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47160 * 300.00258 * 14 12 10 18 18 C 1.52999 * 109.47493 * 175.76669 * 3 2 1 19 19 C 1.53779 * 113.61256 * 283.04491 * 18 3 2 20 20 C 1.53784 * 87.07686 * 220.01467 * 19 18 3 21 21 C 1.53775 * 87.08302 * 25.43626 * 20 19 18 22 22 H 1.08998 * 109.46955 * 55.13354 * 1 2 3 23 23 H 1.09001 * 109.47437 * 295.13160 * 1 2 3 24 24 H 1.09005 * 109.46977 * 175.13137 * 1 2 3 25 25 H 1.08998 * 109.47008 * 119.99682 * 2 1 3 26 26 H 1.08994 * 109.47269 * 239.99731 * 2 1 3 27 27 H 1.08998 * 109.47205 * 64.99772 * 8 6 5 28 28 H 1.08996 * 109.47400 * 185.00093 * 8 6 5 29 29 H 1.09003 * 109.46936 * 305.00330 * 8 6 5 30 30 H 1.08997 * 109.46944 * 56.37692 * 9 6 5 31 31 H 1.09004 * 109.46972 * 176.38049 * 9 6 5 32 32 H 0.97005 * 119.99740 * 179.97438 * 13 12 10 33 33 H 1.09004 * 112.84687 * 54.35045 * 18 3 2 34 34 H 1.09002 * 113.61709 * 334.56117 * 19 18 3 35 35 H 1.08994 * 113.61466 * 105.47037 * 19 18 3 36 36 H 1.09001 * 113.61845 * 270.88134 * 20 19 18 37 37 H 1.09005 * 113.68929 * 139.98863 * 20 19 18 38 38 H 1.09002 * 113.61149 * 220.02016 * 21 20 19 39 39 H 1.08994 * 113.62294 * 89.11410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9778 0.8496 5 8 1.6466 2.0869 -1.2133 6 6 1.3120 3.4672 -1.0564 7 1 1.9700 3.9184 -0.3138 8 6 -0.1408 3.5904 -0.5924 9 6 1.4828 4.1887 -2.3948 10 6 2.9313 4.1441 -2.8082 11 1 3.6428 3.5803 -2.2231 12 6 3.3483 4.8230 -3.9335 13 7 2.4820 5.5098 -4.6457 14 14 5.1436 4.7671 -4.4464 15 1 5.5399 3.3602 -4.7087 16 1 5.3315 5.5729 -5.6794 17 1 5.9868 5.3241 -3.3583 18 6 3.5663 1.4439 0.1065 19 6 4.0850 1.1603 1.5261 20 6 5.1510 2.2380 1.2670 21 6 4.1725 2.8498 0.2506 22 1 -0.3633 0.5875 -0.8432 23 1 -0.3634 0.4364 0.9304 24 1 -0.3633 -1.0240 -0.0872 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 -0.2430 3.1541 0.4012 28 1 -0.4233 4.6425 -0.5582 29 1 -0.7909 3.0620 -1.2898 30 1 0.8733 3.6971 -3.1529 31 1 1.1664 5.2266 -2.2910 32 1 2.7754 5.9877 -5.4372 33 1 4.0448 0.8389 -0.6637 34 1 3.3769 1.4263 2.3110 35 1 4.4973 0.1588 1.6483 36 1 6.0638 1.8496 0.8151 37 1 5.3441 2.8788 2.1273 38 1 4.6555 3.2121 -0.6569 39 1 3.4883 3.5777 0.6867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719704720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:53 Heat of formation + Delta-G solvation = -72.271005 kcal Electronic energy + Delta-G solvation = -16800.829021 eV Core-core repulsion = 14321.551819 eV Total energy + Delta-G solvation = -2479.277202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58715 -38.20249 -35.53828 -34.23587 -32.41952 -29.27686 -28.55625 -26.45481 -25.17882 -24.21696 -21.99764 -21.65095 -20.16680 -18.43083 -17.75988 -16.63876 -16.55436 -15.98946 -15.48309 -15.06471 -14.55316 -14.31625 -13.76777 -13.70958 -13.34486 -13.29095 -13.16363 -13.00195 -12.82816 -12.65248 -12.48095 -12.45050 -12.12016 -11.87686 -11.72610 -11.50713 -11.38376 -11.15376 -10.83272 -10.75252 -10.51918 -9.88359 -8.13888 -6.19543 1.37377 1.40370 1.47583 2.43135 3.00542 3.22567 3.72854 3.84493 3.91367 4.04976 4.21581 4.26872 4.35522 4.42283 4.49926 4.53487 4.61036 4.84130 4.85878 4.90722 4.96569 5.05189 5.05380 5.10645 5.13738 5.22973 5.25029 5.27567 5.32508 5.43677 5.50629 5.58162 5.64550 5.65703 5.88137 6.33563 6.80029 6.95021 7.46481 8.98654 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.009722 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.373694 B = 2879.244492 C = 3673.711491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.061 0.939 5 O -0.382 6.382 6 C 0.100 3.900 7 H 0.051 0.949 8 C -0.166 4.166 9 C 0.029 3.971 10 C -0.513 4.513 11 H 0.069 0.931 12 C -0.004 4.004 13 N -0.939 5.939 14 Si 0.953 3.047 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.266 1.266 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.136 4.136 21 C -0.145 4.145 22 H 0.039 0.961 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.050 0.950 30 H -0.015 1.015 31 H 0.009 0.991 32 H 0.260 0.740 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 -9.472 14.243 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.079 0.921 5 O -0.302 6.302 6 C 0.043 3.957 7 H 0.069 0.931 8 C -0.224 4.224 9 C -0.008 4.008 10 C -0.551 4.551 11 H 0.087 0.913 12 C -0.200 4.200 13 N -0.581 5.581 14 Si 0.778 3.222 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.174 4.174 21 C -0.182 4.182 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.004 0.996 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.624 -9.460 13.920 16.842 hybrid contribution 0.703 0.592 -0.874 1.268 sum 1.327 -8.869 13.046 15.831 Atomic orbital electron populations 1.21707 0.95301 1.01844 1.01580 1.21615 0.96631 0.94487 1.02607 1.22256 0.92779 0.94209 0.87287 0.92080 1.87994 1.86943 1.23083 1.32169 1.22124 0.94096 0.81923 0.97593 0.93072 1.22303 0.96944 1.01928 1.01180 1.19077 0.96117 0.93635 0.91998 1.21651 0.95115 1.28686 1.09673 0.91288 1.25877 1.01687 0.95546 0.96930 1.70089 1.36020 1.34070 1.17881 0.85684 0.80601 0.78146 0.77755 1.19832 1.21012 1.19067 1.23015 0.95886 0.97487 0.98654 1.22832 0.97900 0.99527 0.94939 1.22827 0.97177 0.98471 0.98900 1.22946 0.99226 0.96797 0.99242 0.94177 0.92118 0.91633 0.88766 0.92777 0.91266 0.91933 0.93059 0.99640 0.97315 0.93145 0.90649 0.89031 0.89955 0.90206 0.90441 0.93915 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.86 71.98 0.71 -2.85 16 2 C -0.12 -2.98 5.62 30.59 0.17 -2.80 16 3 C 0.09 2.87 1.74 30.59 0.05 2.93 16 4 H 0.06 1.76 7.12 -2.39 -0.02 1.74 16 5 O -0.38 -15.89 8.73 -148.98 -1.30 -17.19 16 6 C 0.10 4.26 2.24 30.59 0.07 4.33 16 7 H 0.05 2.13 5.54 -2.39 -0.01 2.12 16 8 C -0.17 -5.80 9.39 71.98 0.68 -5.12 16 9 C 0.03 1.57 4.69 29.85 0.14 1.71 16 10 C -0.51 -29.79 8.85 25.60 0.23 -29.56 16 11 H 0.07 3.86 5.58 -2.91 -0.02 3.85 16 12 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 13 N -0.94 -58.82 13.29 21.45 0.28 -58.53 16 14 Si 0.95 46.07 29.54 68.60 2.03 48.09 16 15 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C -0.13 -3.96 3.35 -10.27 -0.03 -4.00 16 19 C -0.11 -2.50 7.40 31.12 0.23 -2.27 16 20 C -0.14 -3.33 8.08 31.12 0.25 -3.08 16 21 C -0.14 -4.76 6.35 31.12 0.20 -4.56 16 22 H 0.04 1.17 7.67 -2.39 -0.02 1.16 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.09 1.87 7.94 -2.39 -0.02 1.85 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.98 7.64 -2.39 -0.02 1.96 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 33 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.09 1.75 8.04 -2.39 -0.02 1.73 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.04 1.69 6.48 -2.39 -0.02 1.67 16 39 H 0.07 2.41 6.48 -2.39 -0.02 2.39 16 Total: -1.00 -66.22 306.28 5.15 -61.07 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.98 Total: 11.61 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 3.15 Total: -45.06 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.28 Total: -58.53 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.30 Total: -17.19 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -66.22 5.15 -61.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719704720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.197 kcal (2) G-P(sol) polarization free energy of solvation -66.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds