Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46846 * 2 1 4 4 C 1.34777 * 119.99899 * 179.97438 * 3 2 1 5 5 O 1.21588 * 120.00162 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99964 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99981 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.41112 * 324.85944 * 7 6 4 9 9 C 1.52953 * 109.41146 * 84.65373 * 7 6 4 10 10 C 1.53229 * 109.40400 * 183.70497 * 9 7 6 11 11 C 1.51262 * 108.53534 * 305.36946 * 10 9 7 12 12 C 1.37886 * 120.85228 * 231.32765 * 11 10 9 13 13 N 1.31513 * 119.99552 * 348.87807 * 12 11 10 14 14 Si 1.86793 * 120.00054 * 168.88013 * 12 11 10 15 15 H 1.48492 * 109.47408 * 354.65897 * 14 12 11 16 16 H 1.48500 * 109.47240 * 114.66198 * 14 12 11 17 17 H 1.48502 * 109.46883 * 234.65725 * 14 12 11 18 18 C 1.51270 * 118.30196 * 51.34452 * 11 10 9 19 19 C 1.52962 * 109.41357 * 205.00057 * 7 6 4 20 20 H 1.08995 * 109.47238 * 299.99688 * 1 2 3 21 21 H 1.09000 * 109.47334 * 60.00514 * 1 2 3 22 22 H 1.09008 * 109.46911 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47238 * 240.00312 * 2 1 3 24 24 H 1.08999 * 109.46900 * 119.99790 * 2 1 3 25 25 H 0.97001 * 120.00374 * 359.97438 * 3 2 1 26 26 H 0.97009 * 120.00301 * 0.02562 * 6 4 3 27 27 H 1.09005 * 109.48083 * 303.68018 * 9 7 6 28 28 H 1.09003 * 109.48848 * 63.72385 * 9 7 6 29 29 H 1.08999 * 109.62715 * 185.65712 * 10 9 7 30 30 H 1.08993 * 109.78231 * 65.17844 * 10 9 7 31 31 H 0.97004 * 120.00030 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.62780 * 188.93790 * 18 11 10 33 33 H 1.09008 * 109.62037 * 68.36879 * 18 11 10 34 34 H 1.09001 * 109.48381 * 296.28373 * 19 7 6 35 35 H 1.09001 * 109.48009 * 56.31967 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1335 0.7034 0.0005 6 7 3.7925 2.8982 0.0000 7 6 5.2329 3.1660 0.0000 8 1 5.7426 2.4060 0.5921 9 6 5.7574 3.1261 -1.4363 10 6 7.2780 3.3142 -1.4283 11 6 7.6009 4.5897 -0.6821 12 6 8.4184 5.5487 -1.2417 13 7 9.1016 5.2756 -2.3318 14 14 8.5556 7.2357 -0.4515 15 1 7.5974 7.3324 0.6787 16 1 9.9380 7.4351 0.0530 17 1 8.2407 8.2809 -1.4583 18 6 7.0044 4.7861 0.6941 19 6 5.4937 4.5446 0.6091 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.3879 2.1185 -0.0004 26 1 3.1621 3.6356 -0.0004 27 1 5.5124 2.1639 -1.8861 28 1 5.2952 3.9262 -2.0145 29 1 7.6433 3.3869 -2.4527 30 1 7.7517 2.4685 -0.9299 31 1 9.6770 5.9501 -2.7254 32 1 7.1939 5.8045 1.0333 33 1 7.4501 4.0761 1.3910 34 1 5.0377 5.3111 -0.0174 35 1 5.0619 4.5879 1.6090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885781085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -51.882419 kcal Electronic energy + Delta-G solvation = -15923.429799 eV Core-core repulsion = 13341.496369 eV Total energy + Delta-G solvation = -2581.933430 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70220 -36.98755 -35.00698 -33.61159 -31.68534 -30.13980 -29.53557 -27.00271 -23.18800 -21.87541 -21.57017 -20.39586 -19.51525 -17.92496 -16.20941 -15.93317 -15.45283 -14.52218 -14.43765 -13.99688 -13.90978 -13.07780 -12.79866 -12.61718 -12.22960 -12.08516 -11.92030 -11.61747 -11.51020 -10.99816 -10.82099 -10.70504 -10.21541 -9.89737 -9.75106 -9.35349 -9.07558 -8.95074 -8.73524 -8.37675 -8.13416 -6.07808 -3.96612 3.03938 3.27250 3.35871 3.37274 3.60254 4.40114 4.57578 4.89600 4.97848 5.19102 5.20819 5.66405 5.72652 5.82630 5.90622 5.95217 6.23644 6.53123 6.60398 6.63377 6.74914 6.84945 6.85911 7.10955 7.16527 7.18594 7.42086 7.47343 7.68501 7.83829 7.90542 8.37364 8.44636 8.99180 9.00707 9.57540 11.01821 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060466 B = 0.005823 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.962499 B = 4807.714423 C = 5038.626249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.755 5.755 4 C 0.699 3.301 5 O -0.592 6.592 6 N -0.741 5.741 7 C 0.171 3.829 8 H 0.077 0.923 9 C -0.115 4.115 10 C 0.013 3.987 11 C -0.488 4.488 12 C 0.076 3.924 13 N -0.886 5.886 14 Si 0.878 3.122 15 H -0.256 1.256 16 H -0.283 1.283 17 H -0.287 1.287 18 C -0.022 4.022 19 C -0.113 4.113 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.392 0.608 26 H 0.388 0.612 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.007 0.993 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.020 0.980 34 H 0.054 0.946 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.524 -3.529 4.553 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 N -0.413 5.413 4 C 0.398 3.602 5 O -0.470 6.470 6 N -0.394 5.394 7 C 0.068 3.932 8 H 0.095 0.905 9 C -0.154 4.154 10 C -0.025 4.025 11 C -0.507 4.507 12 C -0.127 4.127 13 N -0.523 5.523 14 Si 0.707 3.293 15 H -0.181 1.181 16 H -0.210 1.210 17 H -0.213 1.213 18 C -0.059 4.059 19 C -0.151 4.151 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.220 0.780 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.630 -4.340 4.415 15.886 hybrid contribution -0.571 1.649 0.230 1.761 sum -15.202 -2.690 4.645 16.121 Atomic orbital electron populations 1.22002 0.94855 1.02929 1.02315 1.21064 0.93376 0.82466 1.02164 1.45220 1.05706 1.08565 1.81798 1.16064 0.82144 0.84049 0.77908 1.90913 1.54757 1.43471 1.57833 1.45633 1.09544 1.05125 1.79091 1.20916 0.76473 0.97535 0.98285 0.90491 1.21988 1.00489 0.98616 0.94303 1.19322 0.89169 0.94955 0.99032 1.20056 1.27764 1.03001 0.99906 1.24859 0.94610 0.98305 0.94905 1.69914 1.27000 1.34119 1.21292 0.86754 0.78249 0.84706 0.79631 1.18118 1.20955 1.21298 1.19916 0.90595 0.97975 0.97463 1.21873 1.00724 0.94986 0.97546 0.92158 0.92108 0.90957 0.91876 0.91941 0.77477 0.77967 0.94642 0.93488 0.92804 0.97493 0.92709 0.93831 0.96195 0.92730 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.03 37.16 0.37 -0.78 16 2 C 0.13 1.47 6.39 -4.04 -0.03 1.44 16 3 N -0.76 -9.39 5.56 -65.23 -0.36 -9.75 16 4 C 0.70 12.14 8.53 -86.92 -0.74 11.40 16 5 O -0.59 -13.04 16.01 5.29 0.08 -12.96 16 6 N -0.74 -12.26 5.08 -58.72 -0.30 -12.56 16 7 C 0.17 3.48 2.35 -67.97 -0.16 3.32 16 8 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 9 C -0.11 -2.61 5.50 -26.64 -0.15 -2.75 16 10 C 0.01 0.35 5.93 -27.49 -0.16 0.18 16 11 C -0.49 -12.97 5.48 -98.92 -0.54 -13.52 16 12 C 0.08 2.08 5.44 -17.82 -0.10 1.98 16 13 N -0.89 -25.79 12.82 55.43 0.71 -25.08 16 14 Si 0.88 20.60 27.95 -169.99 -4.75 15.84 16 15 H -0.26 -5.66 5.58 56.52 0.32 -5.35 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.02 -0.50 5.65 -27.49 -0.16 -0.65 16 19 C -0.11 -2.23 5.40 -26.64 -0.14 -2.37 16 20 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.39 3.60 8.49 -40.82 -0.35 3.26 16 26 H 0.39 5.09 8.61 -40.82 -0.35 4.74 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.52 7.19 -51.93 -0.37 1.15 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.99 4.36 -51.93 -0.23 0.76 16 33 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -31.81 282.02 -7.73 -39.54 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.56 Total: 2.45 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.80 Total: -1.74 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.05 Total: -47.39 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.75 Total: 15.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.81 -7.73 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885781085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.338 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds