Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46846 * 2 1 4 4 C 1.34777 * 119.99899 * 179.97438 * 3 2 1 5 5 O 1.21588 * 120.00162 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99964 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99981 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.41112 * 324.85944 * 7 6 4 9 9 C 1.52953 * 109.41146 * 84.65373 * 7 6 4 10 10 C 1.53229 * 109.40400 * 183.70497 * 9 7 6 11 11 C 1.51262 * 108.53534 * 305.36946 * 10 9 7 12 12 C 1.37886 * 120.85228 * 231.32765 * 11 10 9 13 13 N 1.31513 * 119.99552 * 348.87807 * 12 11 10 14 14 Si 1.86793 * 120.00054 * 168.88013 * 12 11 10 15 15 H 1.48492 * 109.47408 * 354.65897 * 14 12 11 16 16 H 1.48500 * 109.47240 * 114.66198 * 14 12 11 17 17 H 1.48502 * 109.46883 * 234.65725 * 14 12 11 18 18 C 1.51270 * 118.30196 * 51.34452 * 11 10 9 19 19 C 1.52962 * 109.41357 * 205.00057 * 7 6 4 20 20 H 1.08995 * 109.47238 * 299.99688 * 1 2 3 21 21 H 1.09000 * 109.47334 * 60.00514 * 1 2 3 22 22 H 1.09008 * 109.46911 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47238 * 240.00312 * 2 1 3 24 24 H 1.08999 * 109.46900 * 119.99790 * 2 1 3 25 25 H 0.97001 * 120.00374 * 359.97438 * 3 2 1 26 26 H 0.97009 * 120.00301 * 0.02562 * 6 4 3 27 27 H 1.09005 * 109.48083 * 303.68018 * 9 7 6 28 28 H 1.09003 * 109.48848 * 63.72385 * 9 7 6 29 29 H 1.08999 * 109.62715 * 185.65712 * 10 9 7 30 30 H 1.08993 * 109.78231 * 65.17844 * 10 9 7 31 31 H 0.97004 * 120.00030 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.62780 * 188.93790 * 18 11 10 33 33 H 1.09008 * 109.62037 * 68.36879 * 18 11 10 34 34 H 1.09001 * 109.48381 * 296.28373 * 19 7 6 35 35 H 1.09001 * 109.48009 * 56.31967 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1335 0.7034 0.0005 6 7 3.7925 2.8982 0.0000 7 6 5.2329 3.1660 0.0000 8 1 5.7426 2.4060 0.5921 9 6 5.7574 3.1261 -1.4363 10 6 7.2780 3.3142 -1.4283 11 6 7.6009 4.5897 -0.6821 12 6 8.4184 5.5487 -1.2417 13 7 9.1016 5.2756 -2.3318 14 14 8.5556 7.2357 -0.4515 15 1 7.5974 7.3324 0.6787 16 1 9.9380 7.4351 0.0530 17 1 8.2407 8.2809 -1.4583 18 6 7.0044 4.7861 0.6941 19 6 5.4937 4.5446 0.6091 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.3879 2.1185 -0.0004 26 1 3.1621 3.6356 -0.0004 27 1 5.5124 2.1639 -1.8861 28 1 5.2952 3.9262 -2.0145 29 1 7.6433 3.3869 -2.4527 30 1 7.7517 2.4685 -0.9299 31 1 9.6770 5.9501 -2.7254 32 1 7.1939 5.8045 1.0333 33 1 7.4501 4.0761 1.3910 34 1 5.0377 5.3111 -0.0174 35 1 5.0619 4.5879 1.6090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885781085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -75.090809 kcal Electronic energy + Delta-G solvation = -15924.436190 eV Core-core repulsion = 13341.496369 eV Total energy + Delta-G solvation = -2582.939821 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.10488 -38.65485 -36.19592 -35.34037 -33.45542 -31.50475 -31.13712 -28.73714 -24.42175 -23.54225 -23.22092 -21.81908 -21.27313 -19.30734 -17.97168 -17.40568 -16.59184 -16.37357 -15.86833 -15.30950 -15.16227 -14.89149 -14.52643 -14.10487 -13.97729 -13.46544 -13.14005 -12.81398 -12.76141 -12.63731 -12.54737 -12.32922 -11.90708 -11.80713 -11.35228 -11.19060 -10.88092 -10.67581 -10.46678 -10.20752 -9.63280 -8.15156 -6.09529 1.43564 1.46290 1.56239 1.80857 2.21851 2.45058 3.10890 3.43298 4.04765 4.17780 4.25048 4.28522 4.52815 4.56616 4.73056 4.89184 4.95873 5.02203 5.06798 5.10419 5.17664 5.24036 5.29446 5.30730 5.56843 5.58451 5.59847 5.73984 5.79880 5.82170 6.12784 6.36694 6.95544 7.21564 7.48190 7.67494 8.96638 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060466 B = 0.005823 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.962499 B = 4807.714423 C = 5038.626249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 N -0.734 5.734 4 C 0.693 3.307 5 O -0.644 6.644 6 N -0.728 5.728 7 C 0.184 3.816 8 H 0.050 0.950 9 C -0.102 4.102 10 C 0.010 3.990 11 C -0.501 4.501 12 C 0.017 3.983 13 N -0.934 5.934 14 Si 0.943 3.057 15 H -0.226 1.226 16 H -0.287 1.287 17 H -0.288 1.288 18 C -0.025 4.025 19 C -0.103 4.103 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.412 0.588 26 H 0.410 0.590 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.019 0.981 30 H -0.015 1.015 31 H 0.262 0.738 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.067 0.933 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 -2.078 6.218 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.004 3.996 3 N -0.392 5.392 4 C 0.392 3.608 5 O -0.526 6.526 6 N -0.382 5.382 7 C 0.079 3.921 8 H 0.068 0.932 9 C -0.141 4.141 10 C -0.028 4.028 11 C -0.520 4.520 12 C -0.181 4.181 13 N -0.574 5.574 14 Si 0.768 3.232 15 H -0.150 1.150 16 H -0.213 1.213 17 H -0.214 1.214 18 C -0.063 4.063 19 C -0.141 4.141 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.249 0.751 26 H 0.246 0.754 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.004 0.996 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.575 -2.866 6.101 18.823 hybrid contribution 0.318 1.065 -0.331 1.160 sum -17.257 -1.801 5.770 18.285 Atomic orbital electron populations 1.21935 0.91260 1.04264 1.03373 1.21235 0.96179 0.81247 1.00944 1.45074 1.04124 1.10077 1.79898 1.16308 0.83335 0.83484 0.77623 1.90887 1.56577 1.45028 1.60061 1.45200 1.08317 1.05819 1.78888 1.20481 0.78392 0.97510 0.95750 0.93209 1.21785 0.97846 0.97994 0.96466 1.19270 0.91707 0.94851 0.96931 1.20617 1.27403 1.02528 1.01489 1.25773 0.94297 1.02448 0.95538 1.70075 1.28428 1.35436 1.23443 0.85741 0.78557 0.79415 0.79463 1.14958 1.21334 1.21402 1.19928 0.92878 0.98480 0.94969 1.21732 0.98336 0.94342 0.99727 0.90882 0.91165 0.89539 0.93446 0.93023 0.75123 0.75402 0.95842 0.93033 0.96194 0.99629 0.92856 0.92728 0.96585 0.91430 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.03 71.98 0.72 -0.92 16 2 C 0.13 2.59 6.39 86.38 0.55 3.15 16 3 N -0.73 -16.52 5.56 -478.55 -2.66 -19.18 16 4 C 0.69 23.15 8.53 179.05 1.53 24.68 16 5 O -0.64 -28.58 16.01 -3.99 -0.06 -28.65 16 6 N -0.73 -22.39 5.08 -457.94 -2.33 -24.71 16 7 C 0.18 7.24 2.35 44.96 0.11 7.35 16 8 H 0.05 2.26 7.58 -2.39 -0.02 2.25 16 9 C -0.10 -4.66 5.50 30.66 0.17 -4.49 16 10 C 0.01 0.57 5.93 30.10 0.18 0.75 16 11 C -0.50 -26.74 5.48 -16.17 -0.09 -26.83 16 12 C 0.02 0.96 5.44 84.66 0.46 1.42 16 13 N -0.93 -56.10 12.82 21.45 0.28 -55.82 16 14 Si 0.94 41.67 27.95 68.60 1.92 43.58 16 15 H -0.23 -8.82 5.58 99.48 0.56 -8.26 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 C -0.02 -1.09 5.65 30.10 0.17 -0.92 16 19 C -0.10 -3.73 5.40 30.65 0.17 -3.57 16 20 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.41 6.07 8.49 -92.71 -0.79 5.28 16 26 H 0.41 9.17 8.61 -92.70 -0.80 8.37 16 27 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.02 1.17 7.19 -2.39 -0.02 1.16 16 30 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.05 2.28 4.36 -2.39 -0.01 2.27 16 33 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.65 282.02 0.46 -71.19 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -0.65 Total: 12.97 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 3.96 Total: 0.62 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.71 Total: -99.72 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.06 Total: -28.65 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.92 Total: 43.58 kcal Total: -71.65 0.46 -71.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885781085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.901 kcal (2) G-P(sol) polarization free energy of solvation -71.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds