Wall clock time and date at job start Mon Mar 30 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99979 * 2 1 4 4 C 1.34776 * 119.99838 * 179.97438 * 2 1 3 5 5 O 1.21275 * 120.00181 * 5.46945 * 4 2 1 6 6 C 1.50704 * 119.99643 * 185.46490 * 4 2 1 7 7 C 1.53346 * 109.41984 * 287.97508 * 6 4 2 8 8 C 1.53193 * 109.14948 * 178.67437 * 7 6 4 9 9 N 1.46927 * 108.89305 * 54.57910 * 8 7 6 10 10 C 1.36938 * 120.62844 * 126.29584 * 9 8 7 11 11 H 1.08000 * 119.99928 * 330.81268 * 10 9 8 12 12 C 1.38809 * 119.99773 * 150.80902 * 10 9 8 13 13 N 1.31617 * 120.00192 * 341.05493 * 12 10 9 14 14 Si 1.86804 * 119.99964 * 161.04765 * 12 10 9 15 15 H 1.48499 * 109.47161 * 60.00193 * 14 12 10 16 16 H 1.48501 * 109.47329 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46965 * 299.99983 * 14 12 10 18 18 C 1.46921 * 118.73896 * 306.32544 * 9 8 7 19 19 C 1.53046 * 109.45812 * 167.85008 * 6 4 2 20 20 H 1.08995 * 109.47643 * 270.00135 * 1 2 3 21 21 H 1.08998 * 109.46712 * 30.00923 * 1 2 3 22 22 H 1.09003 * 109.46519 * 150.00427 * 1 2 3 23 23 H 1.08994 * 109.47397 * 185.11415 * 3 2 1 24 24 H 1.09010 * 109.46884 * 305.11709 * 3 2 1 25 25 H 1.09004 * 109.47607 * 65.11114 * 3 2 1 26 26 H 1.08998 * 109.45801 * 47.88313 * 6 4 2 27 27 H 1.09004 * 109.67963 * 58.71662 * 7 6 4 28 28 H 1.08991 * 109.47729 * 298.51474 * 7 6 4 29 29 H 1.09005 * 109.58686 * 294.72593 * 8 7 6 30 30 H 1.08993 * 109.58907 * 174.44315 * 8 7 6 31 31 H 0.97005 * 120.00187 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.58628 * 173.39564 * 18 9 8 33 33 H 1.09006 * 109.58672 * 293.66989 * 18 9 8 34 34 H 1.09001 * 109.49690 * 61.43265 * 19 6 4 35 35 H 1.09004 * 109.52366 * 301.35649 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5367 -2.2151 -0.0991 6 6 3.6408 -1.1701 0.1248 7 6 4.2615 -0.6603 -1.1815 8 6 5.7864 -0.6344 -1.0368 9 7 6.2481 -1.9678 -0.6274 10 6 7.2170 -2.6204 -1.3420 11 1 7.3214 -2.4384 -2.4014 12 6 8.0648 -3.5158 -0.7046 13 7 8.2035 -3.4736 0.6035 14 14 9.0088 -4.7809 -1.7036 15 1 9.8878 -4.0863 -2.6783 16 1 9.8375 -5.6120 -0.7937 17 1 8.0511 -5.6506 -2.4328 18 6 5.6501 -2.5879 0.5627 19 6 4.1267 -2.5945 0.4027 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3632 -0.8901 -0.5138 23 1 3.2656 1.0716 -0.0916 24 1 1.8672 1.8790 -0.8407 25 1 2.0047 1.7997 0.9322 26 1 3.9384 -0.5182 0.9462 27 1 3.8989 0.3459 -1.3920 28 1 3.9849 -1.3258 -1.9992 29 1 6.0693 0.0982 -0.2808 30 1 6.2396 -0.3679 -1.9915 31 1 8.7963 -4.0991 1.0489 32 1 6.0116 -3.6115 0.6621 33 1 5.9241 -2.0161 1.4494 34 1 3.8511 -3.2418 -0.4299 35 1 3.6661 -2.9643 1.3188 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885782035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:45 Heat of formation + Delta-G solvation = -12.983144 kcal Electronic energy + Delta-G solvation = -16382.872929 eV Core-core repulsion = 13802.626298 eV Total energy + Delta-G solvation = -2580.246631 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.96248 -36.95885 -35.41687 -33.16236 -30.61321 -29.94770 -27.98752 -26.52212 -24.96604 -22.43570 -22.11114 -19.57704 -18.71483 -16.83442 -16.63404 -15.82598 -15.47568 -14.79722 -14.06517 -13.63217 -13.57975 -13.20103 -12.98916 -12.59767 -12.52844 -12.40454 -12.08553 -11.84611 -11.42607 -11.05923 -10.87719 -10.66936 -10.27976 -10.21708 -9.95604 -9.79288 -9.55979 -9.18078 -8.61714 -8.43486 -6.64963 -5.77593 -3.19745 2.89411 3.15172 3.41136 3.47068 3.49229 4.52311 4.77280 5.11077 5.23378 5.29061 5.30560 5.43082 5.44706 5.54836 5.57531 5.66343 5.75083 5.86480 6.05351 6.27861 6.38096 6.51622 6.61281 6.68003 6.77642 6.81449 6.92960 7.38013 7.48025 7.65196 7.82542 8.41057 8.47485 9.22841 9.86470 10.43870 11.31274 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053923 B = 0.006663 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.137916 B = 4201.510660 C = 4359.728757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.629 5.629 3 C 0.068 3.932 4 C 0.517 3.483 5 O -0.541 6.541 6 C -0.096 4.096 7 C -0.129 4.129 8 C 0.148 3.852 9 N -0.591 5.591 10 C -0.257 4.257 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.900 5.900 14 Si 0.901 3.099 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.172 3.828 19 C -0.119 4.119 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.057 0.943 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.159 9.571 -0.314 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.364 5.364 3 C -0.075 4.075 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.117 4.117 7 C -0.168 4.168 8 C 0.021 3.979 9 N -0.314 5.314 10 C -0.386 4.386 11 H 0.082 0.918 12 C -0.193 4.193 13 N -0.544 5.544 14 Si 0.730 3.270 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.210 1.210 18 C 0.046 3.954 19 C -0.159 4.159 20 H 0.068 0.932 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.357 8.902 -0.260 14.432 hybrid contribution 0.374 -0.477 -0.372 0.711 sum -10.983 8.425 -0.632 13.856 Atomic orbital electron populations 1.21556 0.80072 1.02777 1.01384 1.47815 1.06663 1.06756 1.75196 1.22066 0.98895 0.85168 1.01366 1.21298 0.90871 0.82611 0.74540 1.90638 1.70670 1.31404 1.48975 1.21342 0.88952 1.01287 1.00113 1.22273 0.99462 0.99497 0.95616 1.20875 0.90239 0.88564 0.98229 1.44035 1.42831 1.13578 1.30958 1.19106 1.08165 1.20451 0.90898 0.91815 1.25042 0.97219 1.01477 0.95609 1.70045 1.39206 1.37418 1.07739 0.86403 0.79455 0.81789 0.79327 1.20857 1.21630 1.20973 1.20770 0.86511 0.99855 0.88232 1.22054 0.99799 0.92951 1.01101 0.93189 0.91693 0.90693 0.88731 0.92131 0.92611 0.89574 0.92230 0.91726 0.96307 0.92452 0.93563 0.89706 0.96241 0.91747 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.52 59.85 0.63 1.57 16 2 N -0.63 -8.41 3.27 -189.51 -0.62 -9.03 16 3 C 0.07 0.67 9.79 59.84 0.59 1.26 16 4 C 0.52 8.93 6.94 -10.98 -0.08 8.85 16 5 O -0.54 -11.23 15.56 5.56 0.09 -11.14 16 6 C -0.10 -1.67 1.64 -91.57 -0.15 -1.82 16 7 C -0.13 -2.20 4.94 -26.45 -0.13 -2.33 16 8 C 0.15 2.99 6.50 -3.71 -0.02 2.96 16 9 N -0.59 -14.85 2.99 -172.32 -0.51 -15.37 16 10 C -0.26 -7.09 9.55 -15.06 -0.14 -7.24 16 11 H 0.06 1.73 7.90 -52.49 -0.41 1.31 16 12 C 0.01 0.16 4.85 -17.43 -0.08 0.07 16 13 N -0.90 -26.30 11.41 55.49 0.63 -25.67 16 14 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.17 4.17 5.31 -3.72 -0.02 4.15 16 19 C -0.12 -2.49 4.71 -26.61 -0.13 -2.61 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 22 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 23 H 0.09 1.00 4.06 -51.93 -0.21 0.79 16 24 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 1.40 7.49 -51.93 -0.39 1.01 16 27 H 0.06 0.81 5.63 -51.93 -0.29 0.52 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 2.31 6.21 -51.93 -0.32 1.98 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 1.46 8.01 -51.93 -0.42 1.04 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 276.87 15.07 4.17 4.17 Total: -1.00 -32.11 276.87 -6.16 -38.27 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.35 Total: -2.96 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 0.46 Total: 4.87 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.50 Total: -50.07 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.11 -6.16 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885782035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.291 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds