Wall clock time and date at job start Mon Mar 30 2020 03:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34781 * 120.00043 * 2 1 4 4 O 1.21279 * 119.99657 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00000 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47014 * 180.02562 * 5 3 2 7 7 C 1.53352 * 109.41800 * 295.12992 * 6 5 3 8 8 C 1.53190 * 109.15070 * 178.67720 * 7 6 5 9 9 N 1.46925 * 108.89356 * 54.57285 * 8 7 6 10 10 C 1.36935 * 120.62758 * 126.30089 * 9 8 7 11 11 H 1.08001 * 120.00088 * 332.62829 * 10 9 8 12 12 C 1.38817 * 119.99782 * 152.62208 * 10 9 8 13 13 N 1.31618 * 119.99923 * 159.36242 * 12 10 9 14 14 Si 1.86801 * 120.00195 * 339.36341 * 12 10 9 15 15 H 1.48501 * 109.47054 * 92.89675 * 14 12 10 16 16 H 1.48497 * 109.47324 * 212.90179 * 14 12 10 17 17 H 1.48501 * 109.46722 * 332.89954 * 14 12 10 18 18 C 1.46926 * 118.73822 * 306.31916 * 9 8 7 19 19 C 1.53037 * 109.46053 * 174.99837 * 6 5 3 20 20 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47611 * 300.00100 * 1 2 3 22 22 H 1.09008 * 109.47017 * 60.00575 * 1 2 3 23 23 H 0.97001 * 120.00574 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46847 * 59.99996 * 5 3 2 25 25 H 1.08996 * 109.46957 * 299.99883 * 5 3 2 26 26 H 1.09008 * 109.45887 * 55.02636 * 6 5 3 27 27 H 1.09004 * 109.68561 * 58.70472 * 7 6 5 28 28 H 1.09004 * 109.47287 * 298.51133 * 7 6 5 29 29 H 1.09004 * 109.58215 * 294.71811 * 8 7 6 30 30 H 1.08997 * 109.58828 * 174.43980 * 8 7 6 31 31 H 0.96999 * 119.99917 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.58248 * 173.39705 * 18 9 8 33 33 H 1.08994 * 109.58922 * 293.68210 * 18 9 8 34 34 H 1.09003 * 109.49698 * 61.43697 * 19 6 5 35 35 H 1.08994 * 109.52761 * 301.35110 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6097 0.0011 7 6 3.7472 3.2954 -1.3083 8 6 4.2320 4.7485 -1.2872 9 7 5.6769 4.7641 -1.0213 10 6 6.5337 5.4244 -1.8609 11 1 6.2769 5.5537 -2.9019 12 6 7.7322 5.9278 -1.3739 13 7 8.7210 6.1896 -2.2022 14 14 7.9418 6.2334 0.4569 15 1 8.5445 5.0345 1.0931 16 1 8.8315 7.4041 0.6648 17 1 6.6160 6.5046 1.0684 18 6 6.1850 4.0575 0.1625 19 6 5.6810 2.6113 0.1275 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.9500 -0.8400 0.0004 24 1 4.0095 0.6532 -0.8891 25 1 4.0088 0.6536 0.8908 26 1 3.7211 3.1483 0.8433 27 1 2.6622 3.2753 -1.4103 28 1 4.2019 2.7724 -2.1497 29 1 3.7101 5.2964 -0.5027 30 1 4.0330 5.2141 -2.2524 31 1 9.5586 6.5409 -1.8619 32 1 7.2749 4.0650 0.1526 33 1 5.8244 4.5506 1.0652 34 1 6.1174 2.0945 -0.7273 35 1 5.9709 2.1027 1.0469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885782041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:19 Heat of formation + Delta-G solvation = -23.811930 kcal Electronic energy + Delta-G solvation = -16157.603655 eV Core-core repulsion = 13576.887453 eV Total energy + Delta-G solvation = -2580.716202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85513 -37.61476 -34.67881 -33.72416 -31.42250 -30.18882 -28.89169 -26.39789 -23.93860 -22.68396 -21.37153 -20.32816 -19.20289 -17.20577 -16.60500 -15.95388 -15.47074 -15.08960 -14.24997 -13.90899 -13.76170 -13.47988 -13.24802 -12.79324 -12.47809 -12.42325 -12.17490 -11.65736 -11.59133 -11.22337 -10.69808 -10.44665 -10.39580 -9.99972 -9.87043 -9.64219 -9.50357 -9.28695 -9.16888 -8.50980 -6.84848 -5.86803 -3.20588 2.68708 3.17455 3.37859 3.54458 3.59509 4.61253 4.75869 5.01906 5.09686 5.13227 5.19563 5.32318 5.44070 5.57305 5.65985 5.75388 5.81408 6.04527 6.08345 6.25986 6.27501 6.38497 6.54491 6.68905 6.72473 6.80427 6.85289 6.85950 7.14935 7.38724 8.07381 8.24083 8.42006 9.05363 9.82223 10.22431 11.29677 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.059769 B = 0.006350 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.358604 B = 4408.377824 C = 4545.793753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.744 5.744 3 C 0.510 3.490 4 O -0.529 6.529 5 C -0.136 4.136 6 C -0.064 4.064 7 C -0.132 4.132 8 C 0.150 3.850 9 N -0.608 5.608 10 C -0.255 4.255 11 H 0.084 0.916 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.883 3.117 15 H -0.289 1.289 16 H -0.304 1.304 17 H -0.271 1.271 18 C 0.127 3.873 19 C -0.129 4.129 20 H 0.071 0.929 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.400 0.600 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 -14.790 5.760 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.397 5.397 3 C 0.298 3.702 4 O -0.404 6.404 5 C -0.176 4.176 6 C -0.083 4.083 7 C -0.171 4.171 8 C 0.024 3.976 9 N -0.332 5.332 10 C -0.383 4.383 11 H 0.102 0.898 12 C -0.178 4.178 13 N -0.556 5.556 14 Si 0.714 3.286 15 H -0.217 1.217 16 H -0.233 1.233 17 H -0.196 1.196 18 C 0.001 3.999 19 C -0.168 4.168 20 H 0.090 0.910 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.233 0.767 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.834 -13.917 5.713 19.775 hybrid contribution 0.456 -0.341 1.040 1.185 sum -12.379 -14.257 6.753 20.053 Atomic orbital electron populations 1.21484 0.80153 1.01785 1.02238 1.45926 1.07562 1.08977 1.77275 1.20991 0.90771 0.83295 0.75168 1.90689 1.70548 1.31086 1.48105 1.21834 0.90793 1.01110 1.03902 1.20877 0.95475 0.92233 0.99751 1.22186 1.00660 0.98290 0.95921 1.20898 0.84296 0.93426 0.98963 1.44390 1.01997 1.58912 1.27860 1.18961 0.98581 1.29268 0.91492 0.89803 1.25275 0.96335 0.98948 0.97208 1.69843 1.03388 1.47962 1.34402 0.86941 0.77473 0.76651 0.87583 1.21715 1.23283 1.19588 1.21298 0.98493 0.90277 0.89844 1.22077 0.94549 0.99473 1.00717 0.91029 0.92449 0.92359 0.76683 0.88990 0.89324 0.91120 0.91077 0.92784 0.96065 0.92233 0.92907 0.91101 0.95914 0.91712 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.70 59.84 0.64 1.35 16 2 N -0.74 -6.86 5.71 -67.08 -0.38 -7.24 16 3 C 0.51 6.68 7.54 -10.98 -0.08 6.60 16 4 O -0.53 -9.11 13.96 5.56 0.08 -9.04 16 5 C -0.14 -1.66 5.18 -27.88 -0.14 -1.81 16 6 C -0.06 -1.06 1.80 -90.42 -0.16 -1.23 16 7 C -0.13 -2.42 5.13 -26.45 -0.14 -2.56 16 8 C 0.15 3.26 6.50 -3.71 -0.02 3.24 16 9 N -0.61 -15.25 2.77 -172.32 -0.48 -15.73 16 10 C -0.25 -7.41 10.03 -15.06 -0.15 -7.56 16 11 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 12 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16 13 N -0.91 -28.68 13.97 55.49 0.78 -27.91 16 14 Si 0.88 23.15 24.34 -169.99 -4.14 19.01 16 15 H -0.29 -7.26 6.62 56.52 0.37 -6.88 16 16 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 17 H -0.27 -7.06 6.64 56.52 0.38 -6.69 16 18 C 0.13 2.88 4.21 -3.71 -0.02 2.86 16 19 C -0.13 -2.30 5.36 -26.61 -0.14 -2.45 16 20 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.40 2.39 8.83 -40.82 -0.36 2.03 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.26 7.96 -51.92 -0.41 0.85 16 27 H 0.07 1.30 5.94 -51.93 -0.31 0.99 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.07 1.75 4.50 -51.93 -0.23 1.51 16 33 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 274.68 15.07 4.14 4.14 Total: -1.00 -34.28 274.68 -5.83 -40.10 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.51 Total: -2.32 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.31 Total: -1.02 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.14 Total: 19.01 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.28 -5.83 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885782041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.293 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds