Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44308 * 110.99752 * 2 1 4 4 C 1.53987 * 108.31385 * 221.34999 * 3 2 1 5 5 C 1.45883 * 112.66106 * 278.59843 * 4 3 2 6 6 C 1.54516 * 111.67067 * 61.50283 * 5 4 3 7 7 H 1.09006 * 109.57297 * 42.56988 * 6 5 4 8 8 N 1.46500 * 109.57074 * 162.81701 * 6 5 4 9 9 C 1.34777 * 119.99956 * 205.00118 * 8 6 5 10 10 O 1.21688 * 120.00257 * 0.02562 * 9 8 6 11 11 C 1.46379 * 120.00150 * 180.02562 * 9 8 6 12 12 H 1.08000 * 119.99706 * 353.93789 * 11 9 8 13 13 C 1.40049 * 120.00139 * 173.93958 * 11 9 8 14 14 N 1.30667 * 119.99994 * 6.15122 * 13 11 9 15 15 Si 1.86800 * 119.99832 * 186.15102 * 13 11 9 16 16 H 1.48503 * 109.47158 * 94.98137 * 15 13 11 17 17 H 1.48498 * 109.47096 * 214.98020 * 15 13 11 18 18 H 1.48498 * 109.47312 * 334.98232 * 15 13 11 19 19 C 1.50531 * 108.86523 * 282.75783 * 6 5 4 20 20 C 1.47943 * 110.99939 * 127.41625 * 2 1 3 21 21 H 1.09003 * 109.47240 * 56.04882 * 1 2 3 22 22 H 1.08992 * 109.47493 * 296.04862 * 1 2 3 23 23 H 1.08996 * 109.46997 * 176.04162 * 1 2 3 24 24 H 1.08996 * 109.69508 * 341.05495 * 3 2 1 25 25 H 1.08994 * 109.69356 * 101.60594 * 3 2 1 26 26 H 1.08994 * 108.84683 * 39.42347 * 4 3 2 27 27 H 1.09004 * 108.84443 * 157.88965 * 4 3 2 28 28 H 1.09002 * 109.04118 * 182.06667 * 5 4 3 29 29 H 1.08994 * 109.04034 * 300.93928 * 5 4 3 30 30 H 0.97002 * 120.00474 * 25.00028 * 8 6 5 31 31 H 0.97001 * 119.99994 * 180.02562 * 14 13 11 32 32 H 1.09001 * 108.78888 * 212.64299 * 19 6 5 33 33 H 1.09000 * 108.78935 * 330.97111 * 19 6 5 34 34 H 1.09001 * 108.71328 * 313.17757 * 20 2 1 35 35 H 1.08997 * 108.71304 * 71.19254 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3473 0.0000 4 6 3.1840 1.4058 -0.9658 5 6 4.4181 0.9166 -0.3609 6 6 4.2991 -0.5656 0.0593 7 1 3.7885 -1.1271 -0.7231 8 7 5.6366 -1.1244 0.2713 9 6 5.8405 -2.4508 0.1458 10 8 4.9136 -3.1841 -0.1440 11 6 7.1767 -3.0093 0.3582 12 1 8.0178 -2.3510 0.5185 13 6 7.3645 -4.3971 0.3534 14 7 6.3736 -5.1894 0.0409 15 14 9.0317 -5.1155 0.7936 16 1 9.0515 -5.4738 2.2346 17 1 9.2778 -6.3316 -0.0223 18 1 10.0914 -4.1121 0.5185 19 6 3.5074 -0.6472 1.3370 20 6 1.9991 -0.8392 1.0970 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3634 0.4512 0.9232 23 1 -0.3633 -1.0252 -0.0709 24 1 1.2115 2.0380 -0.3332 25 1 2.3104 1.6162 1.0052 26 1 2.9583 0.8006 -1.8438 27 1 3.3330 2.4389 -1.2797 28 1 5.2311 1.0183 -1.0797 29 1 4.6457 1.5184 0.5189 30 1 6.3756 -0.5399 0.5020 31 1 6.5036 -6.1507 0.0380 32 1 3.8784 -1.4853 1.9270 33 1 3.6570 0.2727 1.9021 34 1 1.4649 -0.5934 2.0148 35 1 1.8137 -1.8862 0.8572 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885782250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = -41.100878 kcal Electronic energy + Delta-G solvation = -16224.446691 eV Core-core repulsion = 13642.980784 eV Total energy + Delta-G solvation = -2581.465907 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10904 -36.95284 -34.53286 -32.64811 -32.11236 -30.53291 -27.34596 -26.10664 -24.39678 -23.62906 -20.25624 -19.98192 -18.96862 -17.02156 -15.86264 -15.64669 -15.23592 -14.75796 -14.08341 -13.83154 -13.44816 -13.18305 -12.82107 -12.66476 -12.31640 -12.21322 -11.57826 -11.31119 -11.19655 -10.93334 -10.73796 -10.69520 -10.42843 -10.39125 -10.17685 -10.11350 -9.88212 -8.79374 -8.00572 -7.50477 -7.37687 -6.12609 -4.56681 3.17157 3.24300 3.27870 4.10733 4.15855 4.65823 4.84726 5.07620 5.16281 5.24722 5.36924 5.46244 5.53168 5.69016 5.74089 5.83694 5.92283 5.96625 6.00248 6.11960 6.19745 6.31805 6.40536 6.55294 6.61391 6.85487 7.03779 7.28814 7.46697 7.49670 8.04025 8.24521 8.42908 9.09235 9.65321 10.67571 10.88021 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050587 B = 0.006396 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.365964 B = 4376.711985 C = 4692.630522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.553 5.553 3 C 0.063 3.937 4 C -0.109 4.109 5 C -0.122 4.122 6 C 0.164 3.836 7 H 0.086 0.914 8 N -0.766 5.766 9 C 0.556 3.444 10 O -0.578 6.578 11 C -0.548 4.548 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.125 4.125 20 C 0.070 3.930 21 H 0.064 0.936 22 H 0.018 0.982 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.377 0.623 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 11.725 1.450 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.277 5.277 3 C -0.065 4.065 4 C -0.148 4.148 5 C -0.161 4.161 6 C 0.058 3.942 7 H 0.104 0.896 8 N -0.419 5.419 9 C 0.359 3.641 10 O -0.461 6.461 11 C -0.585 4.585 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.397 5.397 15 Si 0.730 3.270 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.164 4.164 20 C -0.058 4.058 21 H 0.083 0.917 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.208 0.792 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.069 10.772 0.787 12.908 hybrid contribution 0.913 0.295 1.191 1.530 sum -6.155 11.067 1.978 12.817 Atomic orbital electron populations 1.22352 0.87531 1.02087 0.99638 1.60671 1.06792 1.12939 1.47336 1.21806 0.96998 0.89094 0.98623 1.20419 0.94472 1.00257 0.99623 1.20828 0.98041 0.96633 1.00549 1.20174 0.85677 0.92050 0.96343 0.89640 1.46269 1.08261 1.09345 1.78055 1.18186 0.89971 0.79102 0.76828 1.90598 1.45137 1.58178 1.52146 1.20914 0.93174 0.91759 1.52698 0.91568 1.25686 0.97401 0.97140 0.92872 1.70032 1.31262 1.03925 1.34527 0.86404 0.82901 0.78861 0.78823 1.19902 1.20515 1.18953 1.21867 0.93411 1.01479 0.99627 1.22350 0.95125 0.97960 0.90316 0.91688 0.96309 0.91550 0.92003 0.94091 0.90977 0.92581 0.91839 0.92933 0.79215 0.92242 0.90566 0.93583 0.95762 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.30 60.06 0.56 0.94 16 2 N -0.55 -8.19 4.25 -242.93 -1.03 -9.23 16 3 C 0.06 0.82 5.41 -4.70 -0.03 0.79 16 4 C -0.11 -1.47 5.37 -29.59 -0.16 -1.63 16 5 C -0.12 -1.87 4.84 -29.30 -0.14 -2.01 16 6 C 0.16 3.24 2.16 -68.37 -0.15 3.09 16 7 H 0.09 2.01 7.22 -51.93 -0.37 1.63 16 8 N -0.77 -17.44 4.99 -55.64 -0.28 -17.72 16 9 C 0.56 15.98 7.57 -12.99 -0.10 15.88 16 10 O -0.58 -18.84 14.71 5.20 0.08 -18.77 16 11 C -0.55 -15.72 9.53 -35.63 -0.34 -16.06 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 13 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 14 N -0.77 -23.36 11.85 55.55 0.66 -22.70 16 15 Si 0.91 20.42 29.56 -169.99 -5.03 15.39 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 C -0.12 -2.27 4.98 -27.48 -0.14 -2.41 16 20 C 0.07 1.15 5.44 -2.77 -0.02 1.14 16 21 H 0.06 0.68 7.98 -51.93 -0.41 0.27 16 22 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 25 H 0.04 0.53 6.79 -51.93 -0.35 0.18 16 26 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.73 7.59 -51.93 -0.39 0.34 16 30 H 0.38 7.61 8.59 -40.82 -0.35 7.26 16 31 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 32 H 0.08 1.62 7.82 -51.93 -0.41 1.22 16 33 H 0.05 0.74 6.65 -51.93 -0.35 0.39 16 34 H 0.02 0.36 8.02 -51.93 -0.42 -0.06 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -33.53 279.89 -7.51 -41.04 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.52 Total: 5.62 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.60 Total: 2.15 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.65 Total: -49.65 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.08 Total: -18.77 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.53 -7.51 -41.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885782250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.063 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds