Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44308 * 110.99752 * 2 1 4 4 C 1.53987 * 108.31385 * 221.34999 * 3 2 1 5 5 C 1.45883 * 112.66106 * 278.59843 * 4 3 2 6 6 C 1.54516 * 111.67067 * 61.50283 * 5 4 3 7 7 H 1.09006 * 109.57297 * 42.56988 * 6 5 4 8 8 N 1.46500 * 109.57074 * 162.81701 * 6 5 4 9 9 C 1.34777 * 119.99956 * 205.00118 * 8 6 5 10 10 O 1.21688 * 120.00257 * 0.02562 * 9 8 6 11 11 C 1.46379 * 120.00150 * 180.02562 * 9 8 6 12 12 H 1.08000 * 119.99706 * 353.93789 * 11 9 8 13 13 C 1.40049 * 120.00139 * 173.93958 * 11 9 8 14 14 N 1.30667 * 119.99994 * 6.15122 * 13 11 9 15 15 Si 1.86800 * 119.99832 * 186.15102 * 13 11 9 16 16 H 1.48503 * 109.47158 * 94.98137 * 15 13 11 17 17 H 1.48498 * 109.47096 * 214.98020 * 15 13 11 18 18 H 1.48498 * 109.47312 * 334.98232 * 15 13 11 19 19 C 1.50531 * 108.86523 * 282.75783 * 6 5 4 20 20 C 1.47943 * 110.99939 * 127.41625 * 2 1 3 21 21 H 1.09003 * 109.47240 * 56.04882 * 1 2 3 22 22 H 1.08992 * 109.47493 * 296.04862 * 1 2 3 23 23 H 1.08996 * 109.46997 * 176.04162 * 1 2 3 24 24 H 1.08996 * 109.69508 * 341.05495 * 3 2 1 25 25 H 1.08994 * 109.69356 * 101.60594 * 3 2 1 26 26 H 1.08994 * 108.84683 * 39.42347 * 4 3 2 27 27 H 1.09004 * 108.84443 * 157.88965 * 4 3 2 28 28 H 1.09002 * 109.04118 * 182.06667 * 5 4 3 29 29 H 1.08994 * 109.04034 * 300.93928 * 5 4 3 30 30 H 0.97002 * 120.00474 * 25.00028 * 8 6 5 31 31 H 0.97001 * 119.99994 * 180.02562 * 14 13 11 32 32 H 1.09001 * 108.78888 * 212.64299 * 19 6 5 33 33 H 1.09000 * 108.78935 * 330.97111 * 19 6 5 34 34 H 1.09001 * 108.71328 * 313.17757 * 20 2 1 35 35 H 1.08997 * 108.71304 * 71.19254 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3473 0.0000 4 6 3.1840 1.4058 -0.9658 5 6 4.4181 0.9166 -0.3609 6 6 4.2991 -0.5656 0.0593 7 1 3.7885 -1.1271 -0.7231 8 7 5.6366 -1.1244 0.2713 9 6 5.8405 -2.4508 0.1458 10 8 4.9136 -3.1841 -0.1440 11 6 7.1767 -3.0093 0.3582 12 1 8.0178 -2.3510 0.5185 13 6 7.3645 -4.3971 0.3534 14 7 6.3736 -5.1894 0.0409 15 14 9.0317 -5.1155 0.7936 16 1 9.0515 -5.4738 2.2346 17 1 9.2778 -6.3316 -0.0223 18 1 10.0914 -4.1121 0.5185 19 6 3.5074 -0.6472 1.3370 20 6 1.9991 -0.8392 1.0970 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3634 0.4512 0.9232 23 1 -0.3633 -1.0252 -0.0709 24 1 1.2115 2.0380 -0.3332 25 1 2.3104 1.6162 1.0052 26 1 2.9583 0.8006 -1.8438 27 1 3.3330 2.4389 -1.2797 28 1 5.2311 1.0183 -1.0797 29 1 4.6457 1.5184 0.5189 30 1 6.3756 -0.5399 0.5020 31 1 6.5036 -6.1507 0.0380 32 1 3.8784 -1.4853 1.9270 33 1 3.6570 0.2727 1.9021 34 1 1.4649 -0.5934 2.0148 35 1 1.8137 -1.8862 0.8572 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885782250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = -66.688075 kcal Electronic energy + Delta-G solvation = -16225.556235 eV Core-core repulsion = 13642.980784 eV Total energy + Delta-G solvation = -2582.575451 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53144 -38.84385 -36.11191 -34.60350 -33.76565 -32.21423 -28.85816 -27.84062 -25.79408 -24.90703 -21.99022 -21.46676 -20.51722 -19.06807 -17.40936 -17.17093 -16.90367 -16.05575 -15.90815 -15.32383 -14.81551 -14.69165 -14.29355 -14.07349 -14.01269 -13.64084 -13.12439 -12.93354 -12.75617 -12.58497 -12.48604 -12.17794 -11.99269 -11.88225 -11.65111 -11.43753 -11.32639 -10.91579 -9.78252 -9.43589 -9.05441 -8.26959 -6.82403 1.40097 1.41642 1.57392 2.25891 2.50944 2.98057 3.16790 3.65329 3.77199 4.01598 4.13307 4.16825 4.23939 4.45314 4.53770 4.58964 4.63729 4.78999 4.80819 4.85849 5.01693 5.10177 5.17990 5.19491 5.33584 5.34090 5.39597 5.55871 5.93686 6.16320 6.29858 6.38226 6.43548 6.89412 7.63329 8.54891 8.72041 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050587 B = 0.006396 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.365964 B = 4376.711985 C = 4692.630522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.574 5.574 3 C 0.063 3.937 4 C -0.109 4.109 5 C -0.110 4.110 6 C 0.161 3.839 7 H 0.039 0.961 8 N -0.754 5.754 9 C 0.539 3.461 10 O -0.630 6.630 11 C -0.577 4.577 12 H 0.086 0.914 13 C 0.028 3.972 14 N -0.824 5.824 15 Si 0.998 3.002 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.248 1.248 19 C -0.117 4.117 20 C 0.078 3.922 21 H 0.083 0.917 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.273 0.727 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 14.000 2.129 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.299 5.299 3 C -0.065 4.065 4 C -0.147 4.147 5 C -0.148 4.148 6 C 0.056 3.944 7 H 0.058 0.942 8 N -0.407 5.407 9 C 0.343 3.657 10 O -0.517 6.517 11 C -0.614 4.614 12 H 0.104 0.896 13 C -0.186 4.186 14 N -0.453 5.453 15 Si 0.817 3.183 16 H -0.188 1.188 17 H -0.198 1.198 18 H -0.171 1.171 19 C -0.157 4.157 20 C -0.050 4.050 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.181 13.122 1.470 14.579 hybrid contribution 0.571 -0.360 0.944 1.161 sum -5.610 12.762 2.415 14.149 Atomic orbital electron populations 1.22407 0.85704 1.02153 1.01272 1.60598 1.08604 1.14151 1.46577 1.21900 0.97474 0.88268 0.98863 1.20437 0.93785 1.01679 0.98825 1.20755 0.99349 0.92996 1.01657 1.20325 0.83732 0.94466 0.95883 0.94230 1.45970 1.10183 1.07857 1.76677 1.18575 0.89903 0.80744 0.76498 1.90553 1.46547 1.60070 1.54483 1.21461 0.93757 0.93045 1.53143 0.89611 1.26974 1.02502 0.97324 0.91840 1.70206 1.34658 1.04641 1.35817 0.85009 0.76438 0.78062 0.78757 1.18824 1.19796 1.17124 1.21733 0.94386 1.01128 0.98412 1.22123 0.94173 0.96716 0.91988 0.89786 0.94680 0.92489 0.89182 0.93398 0.93144 0.89079 0.91885 0.90433 0.77472 0.91695 0.94638 0.90496 0.93639 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.30 127.69 1.19 1.90 16 2 N -0.57 -16.45 4.25 -922.48 -3.92 -20.37 16 3 C 0.06 1.43 5.41 87.12 0.47 1.90 16 4 C -0.11 -2.65 5.37 28.75 0.15 -2.49 16 5 C -0.11 -3.14 4.84 28.93 0.14 -3.00 16 6 C 0.16 6.51 2.16 44.71 0.10 6.61 16 7 H 0.04 1.97 7.22 -2.38 -0.02 1.95 16 8 N -0.75 -35.12 4.99 -448.17 -2.24 -37.35 16 9 C 0.54 32.29 7.57 86.36 0.65 32.95 16 10 O -0.63 -43.57 14.71 -4.31 -0.06 -43.63 16 11 C -0.58 -33.64 9.53 24.83 0.24 -33.41 16 12 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 13 C 0.03 1.62 5.49 85.31 0.47 2.09 16 14 N -0.82 -51.82 11.85 21.84 0.26 -51.56 16 15 Si 1.00 41.91 29.56 68.60 2.03 43.94 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 19 C -0.12 -4.34 4.98 30.11 0.15 -4.19 16 20 C 0.08 2.60 5.44 86.41 0.47 3.07 16 21 H 0.08 1.54 7.98 -2.39 -0.02 1.52 16 22 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 1.57 7.51 -2.39 -0.02 1.55 16 25 H 0.05 1.04 6.79 -2.39 -0.02 1.03 16 26 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 27 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 1.87 7.59 -2.39 -0.02 1.85 16 30 H 0.39 15.71 8.59 -92.71 -0.80 14.92 16 31 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 32 H 0.03 1.58 7.82 -2.39 -0.02 1.56 16 33 H 0.08 2.33 6.65 -2.39 -0.02 2.31 16 34 H 0.05 1.31 8.02 -2.39 -0.02 1.29 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -77.43 279.89 0.37 -77.06 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.27 Total: 26.50 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 4.03 Total: 5.42 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -5.90 Total: -109.29 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.06 Total: -43.63 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -77.43 0.37 -77.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885782250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.374 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds