Wall clock time and date at job start Mon Mar 30 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46900 * 111.00120 * 2 1 4 4 C 1.50703 * 109.47234 * 66.03866 * 3 2 1 5 5 H 1.08004 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00008 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99983 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00239 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47132 * 89.99315 * 8 6 4 10 10 H 1.48494 * 109.47163 * 210.00050 * 8 6 4 11 11 H 1.48502 * 109.46930 * 329.99963 * 8 6 4 12 12 C 1.46898 * 111.00513 * 236.04394 * 2 1 3 13 13 C 1.53006 * 109.47006 * 293.95181 * 12 2 1 14 14 N 1.46496 * 109.46995 * 179.97438 * 13 12 2 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.53001 * 117.49924 * 248.61926 * 17 15 14 19 19 C 1.52997 * 60.00080 * 252.51036 * 18 17 15 20 20 H 1.09008 * 109.47294 * 183.95307 * 1 2 3 21 21 H 1.08994 * 109.47718 * 303.95889 * 1 2 3 22 22 H 1.09007 * 109.47181 * 63.96365 * 1 2 3 23 23 H 1.08997 * 109.47821 * 186.04187 * 3 2 1 24 24 H 1.09003 * 109.46887 * 306.04174 * 3 2 1 25 25 H 0.97000 * 119.99944 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47062 * 173.95435 * 12 2 1 27 27 H 1.08993 * 109.47084 * 53.94882 * 12 2 1 28 28 H 1.09001 * 109.46801 * 300.00064 * 13 12 2 29 29 H 1.09001 * 109.46998 * 59.99660 * 13 12 2 30 30 H 0.96998 * 120.00192 * 359.97438 * 14 13 12 31 31 H 1.09006 * 115.55393 * 34.32883 * 17 15 14 32 32 H 1.08997 * 117.49878 * 0.02562 * 18 17 15 33 33 H 1.09002 * 117.50200 * 145.02129 * 18 17 15 34 34 H 1.09000 * 117.50332 * 252.50780 * 19 18 17 35 35 H 1.09000 * 117.51934 * 107.48216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6367 2.0472 1.2984 5 1 1.0743 1.5113 2.0487 6 6 2.0266 3.3496 1.5284 7 7 1.7132 3.9395 2.6612 8 14 2.9987 4.2767 0.2304 9 1 2.0613 4.9802 -0.6816 10 1 3.8853 5.2684 0.8903 11 1 3.8223 3.3183 -0.5497 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2427 -0.9702 14 7 2.1561 -3.0065 -2.1049 15 6 1.9548 -4.3374 -2.1720 16 8 1.3397 -4.9028 -1.2929 17 6 2.4949 -5.1232 -3.3390 18 6 1.4824 -5.7120 -4.3235 19 6 2.2332 -6.6306 -3.3574 20 1 -0.3634 -1.0253 0.0709 21 1 -0.3634 0.5740 0.8523 22 1 -0.3634 0.4511 -0.9234 23 1 3.0796 1.3445 -0.1082 24 1 1.5611 1.9273 -0.8310 25 1 1.9871 4.8558 2.8229 26 1 3.0798 -0.6610 -1.1754 27 1 1.5611 -0.3874 -2.0627 28 1 2.0659 -2.6213 -0.0449 29 1 0.5473 -2.3476 -0.9321 30 1 2.6478 -2.5542 -2.8082 31 1 3.4446 -4.7724 -3.7429 32 1 0.4257 -5.5305 -4.1274 33 1 1.7658 -5.7484 -5.3754 34 1 3.0105 -7.2714 -3.7736 35 1 1.6707 -7.0540 -2.5253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191390306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:34 Heat of formation + Delta-G solvation = -8.210518 kcal Electronic energy + Delta-G solvation = -15189.346417 eV Core-core repulsion = 12609.306743 eV Total energy + Delta-G solvation = -2580.039674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.97707 -37.32400 -36.24641 -34.53695 -32.48595 -29.55154 -27.54599 -25.67310 -23.91060 -22.69516 -21.65439 -20.54360 -19.79803 -17.58738 -16.80481 -16.15544 -15.64848 -15.14793 -14.70683 -14.38120 -14.21380 -13.74104 -13.15547 -13.00631 -12.70163 -12.30714 -11.83108 -11.64410 -11.56356 -11.10493 -10.96903 -10.88530 -10.79193 -10.68983 -10.24430 -9.96349 -9.81267 -9.32517 -9.02129 -8.60997 -7.49756 -6.07874 -4.05728 2.42292 3.05568 3.25190 3.33162 3.33955 3.63103 4.38708 4.46649 4.55337 4.62296 4.83761 4.91363 5.17133 5.24699 5.30557 5.36677 5.49503 5.67044 5.72620 5.86313 5.98657 6.11296 6.14566 6.25064 6.45284 6.65363 6.78861 6.93332 7.45785 7.53835 7.81189 7.95734 8.19534 8.61291 9.00850 9.53084 11.05235 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060868 B = 0.004386 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.899828 B = 6382.565200 C = 6632.503217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.527 5.527 3 C 0.163 3.837 4 C -0.511 4.511 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.043 3.957 13 C 0.121 3.879 14 N -0.724 5.724 15 C 0.540 3.460 16 O -0.542 6.542 17 C -0.195 4.195 18 C -0.154 4.154 19 C -0.149 4.149 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.013 0.987 23 H 0.029 0.971 24 H -0.015 1.015 25 H 0.264 0.736 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.400 0.600 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -15.162 -15.324 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.252 5.252 3 C 0.037 3.963 4 C -0.549 4.549 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.704 3.296 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.086 4.086 13 C -0.003 4.003 14 N -0.375 5.375 15 C 0.326 3.674 16 O -0.419 6.419 17 C -0.216 4.216 18 C -0.192 4.192 19 C -0.186 4.186 20 H 0.070 0.930 21 H 0.101 0.899 22 H 0.031 0.969 23 H 0.047 0.953 24 H 0.003 0.997 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.233 0.767 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.718 -15.589 -14.121 21.104 hybrid contribution 0.598 1.423 -1.723 2.313 sum 2.316 -14.167 -15.844 21.380 Atomic orbital electron populations 1.22348 0.87985 1.00282 1.01065 1.61861 1.07683 1.16621 1.39004 1.20211 0.95211 0.83690 0.97212 1.21030 1.35740 0.97247 1.00918 0.90007 1.24903 0.95751 0.97342 0.95353 1.69891 1.46765 1.13241 1.23906 0.86847 0.80600 0.80050 0.82126 1.20349 1.21086 1.19259 1.22226 1.00608 0.92375 0.93440 1.21428 0.99316 0.90786 0.88745 1.45918 1.57758 1.07712 1.26101 1.19620 0.79452 0.81994 0.86372 1.90705 1.41332 1.69806 1.40045 1.22214 1.02155 0.97580 0.99632 1.22933 0.97586 1.02697 0.95936 1.22945 1.03012 0.90430 1.02201 0.93000 0.89859 0.96893 0.95309 0.99745 0.92604 0.90800 0.95332 0.90418 0.91395 0.76677 0.85882 0.88253 0.87844 0.87975 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.14 60.06 0.55 1.15 16 2 N -0.53 -10.89 4.75 -244.37 -1.16 -12.05 16 3 C 0.16 3.90 3.79 -4.97 -0.02 3.88 16 4 C -0.51 -14.46 9.01 -34.44 -0.31 -14.77 16 5 H 0.08 2.52 7.37 -52.48 -0.39 2.14 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.04 0.69 5.07 -3.82 -0.02 0.67 16 13 C 0.12 1.79 5.60 -4.04 -0.02 1.77 16 14 N -0.72 -8.72 5.56 -60.29 -0.33 -9.06 16 15 C 0.54 7.07 7.61 -10.98 -0.08 6.99 16 16 O -0.54 -9.36 16.26 5.56 0.09 -9.27 16 17 C -0.19 -1.77 6.19 -91.77 -0.57 -2.34 16 18 C -0.15 -1.19 10.23 -26.73 -0.27 -1.46 16 19 C -0.15 -1.25 10.04 -26.73 -0.27 -1.52 16 20 H 0.05 0.87 6.47 -51.92 -0.34 0.53 16 21 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 24 H -0.02 -0.36 7.55 -51.93 -0.39 -0.75 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 27 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 30 H 0.40 3.63 8.47 -40.82 -0.35 3.28 16 31 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -32.70 291.95 -7.47 -40.16 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.45 Total: -0.31 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.11 Total: -3.76 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.72 Total: -47.79 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.70 -7.47 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191390306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.951 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds