Wall clock time and date at job start Mon Mar 30 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46900 * 111.00120 * 2 1 4 4 C 1.50703 * 109.47234 * 66.03866 * 3 2 1 5 5 H 1.08004 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00008 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99983 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00239 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47132 * 89.99315 * 8 6 4 10 10 H 1.48494 * 109.47163 * 210.00050 * 8 6 4 11 11 H 1.48502 * 109.46930 * 329.99963 * 8 6 4 12 12 C 1.46898 * 111.00513 * 236.04394 * 2 1 3 13 13 C 1.53006 * 109.47006 * 293.95181 * 12 2 1 14 14 N 1.46496 * 109.46995 * 179.97438 * 13 12 2 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.53001 * 117.49924 * 248.61926 * 17 15 14 19 19 C 1.52997 * 60.00080 * 252.51036 * 18 17 15 20 20 H 1.09008 * 109.47294 * 183.95307 * 1 2 3 21 21 H 1.08994 * 109.47718 * 303.95889 * 1 2 3 22 22 H 1.09007 * 109.47181 * 63.96365 * 1 2 3 23 23 H 1.08997 * 109.47821 * 186.04187 * 3 2 1 24 24 H 1.09003 * 109.46887 * 306.04174 * 3 2 1 25 25 H 0.97000 * 119.99944 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47062 * 173.95435 * 12 2 1 27 27 H 1.08993 * 109.47084 * 53.94882 * 12 2 1 28 28 H 1.09001 * 109.46801 * 300.00064 * 13 12 2 29 29 H 1.09001 * 109.46998 * 59.99660 * 13 12 2 30 30 H 0.96998 * 120.00192 * 359.97438 * 14 13 12 31 31 H 1.09006 * 115.55393 * 34.32883 * 17 15 14 32 32 H 1.08997 * 117.49878 * 0.02562 * 18 17 15 33 33 H 1.09002 * 117.50200 * 145.02129 * 18 17 15 34 34 H 1.09000 * 117.50332 * 252.50780 * 19 18 17 35 35 H 1.09000 * 117.51934 * 107.48216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6367 2.0472 1.2984 5 1 1.0743 1.5113 2.0487 6 6 2.0266 3.3496 1.5284 7 7 1.7132 3.9395 2.6612 8 14 2.9987 4.2767 0.2304 9 1 2.0613 4.9802 -0.6816 10 1 3.8853 5.2684 0.8903 11 1 3.8223 3.3183 -0.5497 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2427 -0.9702 14 7 2.1561 -3.0065 -2.1049 15 6 1.9548 -4.3374 -2.1720 16 8 1.3397 -4.9028 -1.2929 17 6 2.4949 -5.1232 -3.3390 18 6 1.4824 -5.7120 -4.3235 19 6 2.2332 -6.6306 -3.3574 20 1 -0.3634 -1.0253 0.0709 21 1 -0.3634 0.5740 0.8523 22 1 -0.3634 0.4511 -0.9234 23 1 3.0796 1.3445 -0.1082 24 1 1.5611 1.9273 -0.8310 25 1 1.9871 4.8558 2.8229 26 1 3.0798 -0.6610 -1.1754 27 1 1.5611 -0.3874 -2.0627 28 1 2.0659 -2.6213 -0.0449 29 1 0.5473 -2.3476 -0.9321 30 1 2.6478 -2.5542 -2.8082 31 1 3.4446 -4.7724 -3.7429 32 1 0.4257 -5.5305 -4.1274 33 1 1.7658 -5.7484 -5.3754 34 1 3.0105 -7.2714 -3.7736 35 1 1.6707 -7.0540 -2.5253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191390306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:34 Heat of formation + Delta-G solvation = -33.298171 kcal Electronic energy + Delta-G solvation = -15190.434299 eV Core-core repulsion = 12609.306743 eV Total energy + Delta-G solvation = -2581.127556 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98880 -38.76223 -37.11272 -35.81951 -34.55875 -31.09167 -29.25279 -27.14166 -25.12945 -23.31624 -23.12985 -21.99054 -20.94929 -19.00846 -18.38603 -17.35448 -16.84609 -16.44237 -16.07472 -15.85184 -15.54642 -14.99632 -14.73343 -14.49404 -14.20722 -13.53829 -13.35001 -12.99566 -12.84212 -12.58660 -12.42565 -12.34513 -11.91045 -11.78499 -11.53304 -11.49166 -11.41309 -10.95631 -10.79070 -10.13919 -9.10611 -8.27862 -6.32320 1.36007 1.38401 1.46756 1.49090 2.05241 2.35421 2.93737 3.05136 3.30643 3.73845 3.86803 3.94229 4.00037 4.07287 4.26566 4.42658 4.46640 4.60905 4.75965 4.81103 4.84419 4.94243 4.98487 5.00527 5.05238 5.20568 5.24287 5.37490 5.52286 5.94442 6.28767 6.52004 6.62455 6.74460 7.22457 7.31316 8.88995 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060868 B = 0.004386 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.899828 B = 6382.565200 C = 6632.503217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.550 5.550 3 C 0.173 3.827 4 C -0.521 4.521 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.244 1.244 12 C 0.050 3.950 13 C 0.133 3.867 14 N -0.711 5.711 15 C 0.533 3.467 16 O -0.592 6.592 17 C -0.198 4.198 18 C -0.140 4.140 19 C -0.154 4.154 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.026 0.974 23 H 0.036 0.964 24 H -0.007 1.007 25 H 0.267 0.733 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.418 0.582 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -15.558 -18.887 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.275 5.275 3 C 0.046 3.954 4 C -0.560 4.560 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.167 1.167 12 C -0.079 4.079 13 C 0.008 3.992 14 N -0.363 5.363 15 C 0.321 3.679 16 O -0.473 6.473 17 C -0.219 4.219 18 C -0.178 4.178 19 C -0.192 4.192 20 H 0.091 0.909 21 H 0.068 0.932 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.011 0.989 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.255 0.745 31 H 0.173 0.827 32 H 0.103 0.897 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.331 -16.000 -17.726 24.110 hybrid contribution 0.024 1.456 -0.537 1.552 sum 3.355 -14.544 -18.263 23.587 Atomic orbital electron populations 1.22256 0.87463 1.01148 1.00210 1.61693 1.08416 1.15290 1.42089 1.19969 0.95549 0.85195 0.94704 1.21295 1.35045 0.97611 1.02001 0.94657 1.25916 0.97003 0.98436 0.97877 1.70061 1.48581 1.13881 1.26564 0.85646 0.79146 0.78689 0.79023 1.19229 1.20864 1.16702 1.22211 1.01211 0.91995 0.92445 1.21089 0.98628 0.90430 0.89053 1.45755 1.57415 1.07501 1.25629 1.20405 0.78505 0.82128 0.86867 1.90686 1.43663 1.70760 1.42219 1.22279 1.03759 0.97332 0.98532 1.23044 0.96535 1.01001 0.97191 1.23022 1.03798 0.90428 1.01931 0.90910 0.93214 0.95521 0.94627 0.98936 0.92410 0.89617 0.93225 0.92650 0.92384 0.74529 0.82682 0.89687 0.84693 0.85275 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.14 127.69 1.17 2.59 16 2 N -0.55 -22.27 4.75 -927.06 -4.41 -26.68 16 3 C 0.17 8.05 3.79 85.56 0.32 8.37 16 4 C -0.52 -30.13 9.01 25.60 0.23 -29.90 16 5 H 0.04 2.30 7.37 -2.91 -0.02 2.28 16 6 C 0.00 0.28 5.47 84.66 0.46 0.74 16 7 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.95 43.07 27.47 68.60 1.88 44.95 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 12 C 0.05 1.48 5.07 86.31 0.44 1.92 16 13 C 0.13 3.78 5.60 86.38 0.48 4.26 16 14 N -0.71 -15.60 5.56 -463.06 -2.57 -18.18 16 15 C 0.53 13.26 7.61 87.66 0.67 13.92 16 16 O -0.59 -20.66 16.26 -3.03 -0.05 -20.71 16 17 C -0.20 -3.05 6.19 -11.54 -0.07 -3.13 16 18 C -0.14 -1.75 10.23 30.59 0.31 -1.44 16 19 C -0.15 -2.28 10.04 30.59 0.31 -1.97 16 20 H 0.07 2.43 6.47 -2.38 -0.02 2.41 16 21 H 0.05 2.20 6.76 -2.39 -0.02 2.18 16 22 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.04 1.62 6.99 -2.39 -0.02 1.60 16 24 H -0.01 -0.32 7.55 -2.39 -0.02 -0.33 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 26 H 0.09 2.36 7.93 -2.39 -0.02 2.34 16 27 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.78 6.55 -2.39 -0.02 1.76 16 30 H 0.42 6.13 8.47 -92.71 -0.79 5.35 16 31 H 0.16 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 Total: -1.00 -73.68 291.95 -0.29 -73.97 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.23 Total: 10.59 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.32 Total: -4.63 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -6.68 Total: -104.17 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -73.68 -0.29 -73.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191390306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.675 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds