Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 120.00054 * 2 1 4 4 N 1.34770 * 120.00172 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00203 * 185.14032 * 4 2 1 6 6 C 1.52993 * 110.81924 * 298.40290 * 5 4 2 7 7 N 1.46494 * 109.47215 * 302.07272 * 6 5 4 8 8 C 1.36946 * 120.00130 * 185.12652 * 7 6 5 9 9 H 1.07993 * 119.99568 * 354.07941 * 8 7 6 10 10 C 1.38806 * 119.99833 * 174.08594 * 8 7 6 11 11 N 1.31621 * 119.99430 * 183.39445 * 10 8 7 12 12 Si 1.86797 * 120.00621 * 3.38635 * 10 8 7 13 13 H 1.48498 * 109.46836 * 92.55259 * 12 10 8 14 14 H 1.48493 * 109.47536 * 212.55669 * 12 10 8 15 15 H 1.48506 * 109.46751 * 332.55867 * 12 10 8 16 16 C 1.54888 * 110.75568 * 175.06530 * 5 4 2 17 17 C 1.54271 * 104.19625 * 279.63180 * 16 5 4 18 18 C 1.53873 * 106.59846 * 336.39065 * 17 16 5 19 19 C 1.54263 * 106.59851 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46827 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46797 * 299.98890 * 1 2 3 22 22 H 1.08990 * 109.47372 * 59.98861 * 1 2 3 23 23 H 0.96996 * 120.00283 * 5.14812 * 4 2 1 24 24 H 1.09003 * 109.47012 * 62.07396 * 6 5 4 25 25 H 1.08997 * 109.47200 * 182.06940 * 6 5 4 26 26 H 0.96997 * 120.00090 * 5.11950 * 7 6 5 27 27 H 0.97011 * 119.99873 * 179.97438 * 11 10 8 28 28 H 1.09007 * 110.48477 * 160.95487 * 16 5 4 29 29 H 1.08994 * 110.48987 * 38.30858 * 16 5 4 30 30 H 1.08992 * 110.03073 * 95.67603 * 17 16 5 31 31 H 1.08997 * 110.02943 * 217.10939 * 17 16 5 32 32 H 1.08995 * 110.03206 * 119.28717 * 18 17 16 33 33 H 1.09002 * 110.03267 * 240.71608 * 18 17 16 34 34 H 1.09007 * 110.48636 * 142.28746 * 19 18 17 35 35 H 1.09004 * 110.48773 * 264.93087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6415 -1.1697 0.1132 6 6 4.2801 -0.4343 -1.0667 7 7 3.8630 -1.0673 -2.3202 8 6 4.3936 -0.6452 -3.5101 9 1 5.0455 0.2154 -3.5356 10 6 4.0933 -1.3235 -4.6833 11 7 4.6555 -0.9593 -5.8163 12 14 2.8916 -2.7534 -4.6544 13 1 1.5236 -2.2561 -4.9484 14 1 3.2862 -3.7525 -5.6795 15 1 2.9097 -3.3879 -3.3118 16 6 4.1816 -2.6179 0.2145 17 6 3.9656 -2.9995 1.6936 18 6 3.9064 -1.6805 2.4838 19 6 4.0891 -0.5434 1.4575 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5140 -0.8898 23 1 1.6989 -2.0054 -0.0763 24 1 3.9598 0.6076 -1.0617 25 1 5.3655 -0.4811 -0.9796 26 1 3.2111 -1.7854 -2.3075 27 1 4.4460 -1.4335 -6.6362 28 1 5.2420 -2.6480 -0.0363 29 1 3.6153 -3.2828 -0.4376 30 1 3.0282 -3.5442 1.8055 31 1 4.7969 -3.6095 2.0470 32 1 2.9403 -1.5852 2.9793 33 1 4.7090 -1.6504 3.2207 34 1 3.4549 0.3058 1.7121 35 1 5.1345 -0.2387 1.4078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567991872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -35.106874 kcal Electronic energy + Delta-G solvation = -16579.996956 eV Core-core repulsion = 13998.790969 eV Total energy + Delta-G solvation = -2581.205987 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05237 -37.50945 -34.44221 -33.11934 -31.37020 -29.79674 -28.63279 -27.91397 -24.59160 -21.87095 -21.12065 -20.03183 -19.14803 -17.60815 -16.63079 -15.90219 -15.26994 -14.68947 -14.51828 -14.40195 -13.52725 -13.26102 -13.00165 -12.66552 -12.54743 -12.19335 -12.00869 -11.66399 -11.40360 -11.15031 -10.99131 -10.88568 -10.62444 -10.52223 -10.33212 -10.12965 -9.57251 -9.40595 -8.74637 -8.62145 -7.10203 -5.70684 -3.04044 2.99969 3.34915 3.38299 3.44842 3.51582 4.59199 4.62403 4.76034 4.90885 5.09649 5.26948 5.42894 5.49370 5.51265 5.59676 5.64296 5.70297 5.83585 5.87730 5.93074 5.94278 6.07122 6.17444 6.29142 6.36974 6.46822 6.54494 6.89642 7.10724 7.85504 8.09527 8.48708 8.59654 9.29323 10.01453 10.23487 11.48287 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.009681 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.454358 B = 2891.648079 C = 3228.501525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.537 6.537 4 N -0.713 5.713 5 C 0.163 3.837 6 C 0.151 3.849 7 N -0.751 5.751 8 C -0.234 4.234 9 H 0.089 0.911 10 C 0.000 4.000 11 N -0.936 5.936 12 Si 0.886 3.114 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.279 1.279 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.125 4.125 20 H 0.070 0.930 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.395 0.605 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.358 0.642 27 H 0.258 0.742 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -4.579 16.997 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.414 6.414 4 N -0.364 5.364 5 C 0.077 3.923 6 C 0.023 3.977 7 N -0.396 5.396 8 C -0.364 4.364 9 H 0.106 0.894 10 C -0.195 4.195 11 N -0.585 5.585 12 Si 0.717 3.283 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.205 1.205 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.164 4.164 20 H 0.089 0.911 21 H 0.108 0.892 22 H 0.111 0.889 23 H 0.228 0.772 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.190 0.810 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.947 -3.695 16.861 18.257 hybrid contribution -1.150 -1.530 -0.280 1.935 sum -7.097 -5.225 16.582 18.778 Atomic orbital electron populations 1.21849 0.92653 1.03703 1.04893 1.20587 0.90104 0.83739 0.75558 1.90692 1.70346 1.31374 1.48973 1.45965 1.07111 1.08453 1.74919 1.21557 0.79540 0.95747 0.95499 1.21021 0.96137 0.96699 0.83866 1.42575 1.51603 1.42991 1.02432 1.19086 1.23375 1.10354 0.83625 0.89366 1.24667 1.00308 0.98957 0.95566 1.69715 1.46645 1.43648 0.98506 0.86520 0.81834 0.83329 0.76656 1.21363 1.21839 1.20540 1.22606 1.02609 0.94895 0.95734 1.22172 1.01289 0.97339 0.95410 1.22101 1.01119 0.94691 0.97885 1.22645 1.02048 0.98123 0.93574 0.91056 0.89246 0.88895 0.77162 0.93334 0.94863 0.80957 0.93224 0.89619 0.91221 0.92253 0.91874 0.92376 0.92088 0.90491 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.39 36.01 0.37 -1.53 16 2 C 0.51 8.13 7.27 -10.99 -0.08 8.05 16 3 O -0.54 -10.77 13.92 5.55 0.08 -10.70 16 4 N -0.71 -10.45 4.70 -45.76 -0.22 -10.66 16 5 C 0.16 2.60 0.34 -129.81 -0.04 2.56 16 6 C 0.15 3.18 5.02 -4.05 -0.02 3.16 16 7 N -0.75 -18.45 5.11 -59.92 -0.31 -18.75 16 8 C -0.23 -6.90 10.47 -15.06 -0.16 -7.06 16 9 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 10 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 11 N -0.94 -30.18 13.97 55.49 0.78 -29.40 16 12 Si 0.89 22.39 27.83 -169.99 -4.73 17.66 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 15 H -0.28 -6.47 6.39 56.52 0.36 -6.11 16 16 C -0.12 -1.70 5.52 -25.07 -0.14 -1.84 16 17 C -0.12 -1.37 6.78 -25.61 -0.17 -1.54 16 18 C -0.12 -1.35 6.78 -25.62 -0.17 -1.52 16 19 C -0.12 -1.76 5.68 -25.06 -0.14 -1.91 16 20 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.39 4.75 8.34 -40.82 -0.34 4.41 16 24 H 0.05 1.16 6.30 -51.93 -0.33 0.83 16 25 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.36 8.41 5.12 -40.82 -0.21 8.20 16 27 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 28 H 0.09 1.27 8.03 -51.93 -0.42 0.86 16 29 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.20 6.50 -51.93 -0.34 0.86 16 35 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 LS Contribution 281.55 15.07 4.24 4.24 Total: -1.00 -34.43 281.55 -6.24 -40.68 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.44 Total: 8.65 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.65 Total: -1.73 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.25 Total: -58.81 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.73 Total: 17.66 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.43 -6.24 -40.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567991872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.572 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds