Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 120.00054 * 2 1 4 4 N 1.34770 * 120.00172 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00203 * 185.14032 * 4 2 1 6 6 C 1.52993 * 110.81924 * 298.40290 * 5 4 2 7 7 N 1.46494 * 109.47215 * 302.07272 * 6 5 4 8 8 C 1.36946 * 120.00130 * 185.12652 * 7 6 5 9 9 H 1.07993 * 119.99568 * 354.07941 * 8 7 6 10 10 C 1.38806 * 119.99833 * 174.08594 * 8 7 6 11 11 N 1.31621 * 119.99430 * 183.39445 * 10 8 7 12 12 Si 1.86797 * 120.00621 * 3.38635 * 10 8 7 13 13 H 1.48498 * 109.46836 * 92.55259 * 12 10 8 14 14 H 1.48493 * 109.47536 * 212.55669 * 12 10 8 15 15 H 1.48506 * 109.46751 * 332.55867 * 12 10 8 16 16 C 1.54888 * 110.75568 * 175.06530 * 5 4 2 17 17 C 1.54271 * 104.19625 * 279.63180 * 16 5 4 18 18 C 1.53873 * 106.59846 * 336.39065 * 17 16 5 19 19 C 1.54263 * 106.59851 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46827 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46797 * 299.98890 * 1 2 3 22 22 H 1.08990 * 109.47372 * 59.98861 * 1 2 3 23 23 H 0.96996 * 120.00283 * 5.14812 * 4 2 1 24 24 H 1.09003 * 109.47012 * 62.07396 * 6 5 4 25 25 H 1.08997 * 109.47200 * 182.06940 * 6 5 4 26 26 H 0.96997 * 120.00090 * 5.11950 * 7 6 5 27 27 H 0.97011 * 119.99873 * 179.97438 * 11 10 8 28 28 H 1.09007 * 110.48477 * 160.95487 * 16 5 4 29 29 H 1.08994 * 110.48987 * 38.30858 * 16 5 4 30 30 H 1.08992 * 110.03073 * 95.67603 * 17 16 5 31 31 H 1.08997 * 110.02943 * 217.10939 * 17 16 5 32 32 H 1.08995 * 110.03206 * 119.28717 * 18 17 16 33 33 H 1.09002 * 110.03267 * 240.71608 * 18 17 16 34 34 H 1.09007 * 110.48636 * 142.28746 * 19 18 17 35 35 H 1.09004 * 110.48773 * 264.93087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6415 -1.1697 0.1132 6 6 4.2801 -0.4343 -1.0667 7 7 3.8630 -1.0673 -2.3202 8 6 4.3936 -0.6452 -3.5101 9 1 5.0455 0.2154 -3.5356 10 6 4.0933 -1.3235 -4.6833 11 7 4.6555 -0.9593 -5.8163 12 14 2.8916 -2.7534 -4.6544 13 1 1.5236 -2.2561 -4.9484 14 1 3.2862 -3.7525 -5.6795 15 1 2.9097 -3.3879 -3.3118 16 6 4.1816 -2.6179 0.2145 17 6 3.9656 -2.9995 1.6936 18 6 3.9064 -1.6805 2.4838 19 6 4.0891 -0.5434 1.4575 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5140 -0.8898 23 1 1.6989 -2.0054 -0.0763 24 1 3.9598 0.6076 -1.0617 25 1 5.3655 -0.4811 -0.9796 26 1 3.2111 -1.7854 -2.3075 27 1 4.4460 -1.4335 -6.6362 28 1 5.2420 -2.6480 -0.0363 29 1 3.6153 -3.2828 -0.4376 30 1 3.0282 -3.5442 1.8055 31 1 4.7969 -3.6095 2.0470 32 1 2.9403 -1.5852 2.9793 33 1 4.7090 -1.6504 3.2207 34 1 3.4549 0.3058 1.7121 35 1 5.1345 -0.2387 1.4078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567991872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -60.915326 kcal Electronic energy + Delta-G solvation = -16581.116095 eV Core-core repulsion = 13998.790969 eV Total energy + Delta-G solvation = -2582.325126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30644 -38.74989 -36.35712 -34.42140 -33.44135 -31.05713 -29.69637 -29.24519 -26.29996 -23.80610 -22.29748 -21.07364 -20.57440 -19.65307 -17.80221 -17.19796 -16.57266 -16.40502 -15.92571 -15.75068 -15.10190 -14.74533 -14.61706 -14.11557 -13.82130 -13.69208 -13.31464 -13.01887 -12.86054 -12.44712 -12.25975 -12.19289 -12.07559 -11.96547 -11.83453 -11.74663 -11.21557 -11.06689 -10.58753 -9.93927 -9.26862 -8.04488 -5.38182 1.31727 1.39601 1.47228 1.78461 2.36827 2.46758 3.24030 3.42333 3.68271 3.78301 3.99023 4.05826 4.38996 4.46712 4.54580 4.61052 4.65027 4.70596 4.81380 4.84316 4.87188 5.06401 5.11299 5.11844 5.17513 5.30357 5.32567 5.51153 5.71116 5.76529 6.18548 6.72261 7.05861 7.42917 7.80044 8.05719 9.17608 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.009681 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.454358 B = 2891.648079 C = 3228.501525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.501 3.499 3 O -0.590 6.590 4 N -0.704 5.704 5 C 0.164 3.836 6 C 0.150 3.850 7 N -0.744 5.744 8 C -0.238 4.238 9 H 0.042 0.958 10 C -0.068 4.068 11 N -0.986 5.986 12 Si 0.964 3.036 13 H -0.279 1.279 14 H -0.293 1.293 15 H -0.241 1.241 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.123 4.123 20 H 0.105 0.895 21 H 0.108 0.892 22 H 0.087 0.913 23 H 0.412 0.588 24 H 0.016 0.984 25 H 0.024 0.976 26 H 0.367 0.633 27 H 0.258 0.742 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 -7.483 19.148 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.290 3.710 3 O -0.470 6.470 4 N -0.357 5.357 5 C 0.077 3.923 6 C 0.023 3.977 7 N -0.390 5.390 8 C -0.369 4.369 9 H 0.060 0.940 10 C -0.259 4.259 11 N -0.637 5.637 12 Si 0.790 3.210 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.165 1.165 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.162 4.162 20 H 0.124 0.876 21 H 0.126 0.874 22 H 0.106 0.894 23 H 0.248 0.752 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.201 0.799 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.145 -6.630 19.066 21.767 hybrid contribution -0.380 -0.481 -0.986 1.161 sum -8.524 -7.111 18.079 21.216 Atomic orbital electron populations 1.21865 0.88631 1.06209 1.05513 1.21536 0.92120 0.83095 0.74227 1.90679 1.71826 1.33254 1.51263 1.45918 1.06443 1.09164 1.74132 1.21415 0.80375 0.96788 0.93727 1.21055 0.96052 0.95711 0.84901 1.42412 1.51503 1.43116 1.01931 1.18991 1.22811 1.09158 0.85960 0.94002 1.25634 1.02753 1.02795 0.94705 1.69928 1.48680 1.45620 0.99448 0.85281 0.78501 0.78796 0.78451 1.20469 1.21949 1.16530 1.22592 1.01676 0.93061 0.98409 1.22127 1.03126 0.97334 0.92499 1.22060 1.02437 0.93212 0.97155 1.22596 1.01192 0.98820 0.93587 0.87618 0.87394 0.89395 0.75155 0.96647 0.95832 0.79863 0.93282 0.90900 0.91046 0.90087 0.90305 0.91178 0.90550 0.92259 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.39 71.24 0.74 -2.41 16 2 C 0.50 15.24 7.27 87.66 0.64 15.87 16 3 O -0.59 -24.16 13.92 -3.05 -0.04 -24.20 16 4 N -0.70 -19.03 4.70 -417.06 -1.96 -20.99 16 5 C 0.16 5.06 0.34 4.90 0.00 5.06 16 6 C 0.15 6.54 5.02 86.38 0.43 6.97 16 7 N -0.74 -36.73 5.11 -343.48 -1.75 -38.48 16 8 C -0.24 -14.51 10.47 84.03 0.88 -13.63 16 9 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 10 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 11 N -0.99 -65.37 13.97 21.65 0.30 -65.06 16 12 Si 0.96 45.51 27.83 68.60 1.91 47.41 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.24 -9.79 6.39 99.48 0.64 -9.15 16 16 C -0.12 -3.04 5.52 31.67 0.17 -2.87 16 17 C -0.11 -2.00 6.78 31.32 0.21 -1.79 16 18 C -0.11 -2.11 6.78 31.32 0.21 -1.90 16 19 C -0.12 -3.36 5.68 31.68 0.18 -3.18 16 20 H 0.11 1.30 7.92 -2.39 -0.02 1.28 16 21 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.41 8.24 8.34 -92.71 -0.77 7.47 16 24 H 0.02 0.78 6.30 -2.39 -0.02 0.77 16 25 H 0.02 1.06 8.12 -2.39 -0.02 1.04 16 26 H 0.37 16.55 5.12 -92.71 -0.47 16.07 16 27 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 28 H 0.07 2.04 8.03 -2.38 -0.02 2.03 16 29 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.84 6.50 -2.38 -0.02 1.82 16 35 H 0.07 1.93 8.05 -2.38 -0.02 1.91 16 Total: -1.00 -78.82 281.55 2.16 -76.66 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.24 Total: 26.21 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 3.94 Total: -1.55 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -3.41 Total: -124.54 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.04 Total: -24.20 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.91 Total: 47.41 kcal Total: -78.82 2.16 -76.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567991872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.745 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds