Wall clock time and date at job start Mon Mar 30 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 119.99349 * 2 1 4 4 N 1.34766 * 119.99846 * 180.27872 * 2 1 3 5 5 C 1.46506 * 119.99993 * 174.71040 * 4 2 1 6 6 C 1.52995 * 109.46967 * 304.29698 * 5 4 2 7 7 C 1.53003 * 109.46645 * 64.29198 * 5 4 2 8 8 N 1.46499 * 109.47209 * 60.00713 * 7 5 4 9 9 C 1.36941 * 120.00300 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99456 * 0.02562 * 9 8 7 11 11 C 1.38808 * 119.99953 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00491 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99627 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47622 * 90.00389 * 13 11 9 15 15 H 1.48506 * 109.47106 * 210.00153 * 13 11 9 16 16 H 1.48504 * 109.47421 * 329.99961 * 13 11 9 17 17 C 1.52995 * 109.47250 * 184.29317 * 5 4 2 18 18 C 1.53004 * 117.49778 * 132.74526 * 17 5 4 19 19 C 1.52999 * 117.49844 * 64.08485 * 17 5 4 20 20 H 1.09000 * 109.46983 * 179.72397 * 1 2 3 21 21 H 1.09007 * 109.47085 * 299.72185 * 1 2 3 22 22 H 1.08997 * 109.47756 * 59.72417 * 1 2 3 23 23 H 0.97006 * 120.00893 * 354.71061 * 4 2 1 24 24 H 1.09001 * 109.47392 * 59.99551 * 6 5 4 25 25 H 1.09003 * 109.47173 * 179.97438 * 6 5 4 26 26 H 1.09001 * 109.47164 * 299.99600 * 6 5 4 27 27 H 1.09004 * 109.46944 * 179.97438 * 7 5 4 28 28 H 1.08993 * 109.47460 * 300.00452 * 7 5 4 29 29 H 0.97002 * 120.00306 * 359.97438 * 8 7 5 30 30 H 0.96995 * 120.00194 * 179.97438 * 12 11 9 31 31 H 1.08997 * 115.55227 * 278.41102 * 17 5 4 32 32 H 1.08997 * 117.49745 * 359.97438 * 18 17 5 33 33 H 1.08997 * 117.50028 * 145.01966 * 18 17 5 34 34 H 1.08998 * 117.49715 * 214.97449 * 19 17 5 35 35 H 1.09000 * 117.49761 * 0.02562 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0057 5 6 3.6412 -1.1693 -0.1227 6 6 4.0529 -0.4071 -1.3837 7 6 4.2521 -0.4912 1.1053 8 7 3.8580 -1.2210 2.3129 9 6 4.2892 -0.7961 3.5412 10 1 4.9196 0.0773 3.6197 11 6 3.9153 -1.4874 4.6854 12 7 3.1466 -2.5515 4.5897 13 14 4.5030 -0.9073 6.3609 14 1 3.5228 0.0562 6.9231 15 1 4.6293 -2.0731 7.2721 16 1 5.8241 -0.2439 6.2198 17 6 4.1436 -2.6117 -0.2116 18 6 5.1631 -2.9385 -1.3047 19 6 3.7200 -3.4333 -1.4307 20 1 -0.3633 -1.0277 -0.0050 21 1 -0.3634 0.5095 0.8925 22 1 -0.3634 0.5181 -0.8874 23 1 1.6990 -2.0059 0.0677 24 1 3.6950 0.6205 -1.3204 25 1 5.1395 -0.4083 -1.4706 26 1 3.6177 -0.8901 -2.2586 27 1 5.3387 -0.4932 1.0186 28 1 3.8942 0.5363 1.1688 29 1 3.2915 -2.0053 2.2424 30 1 2.8857 -3.0347 5.3892 31 1 4.2402 -3.1354 0.7394 32 1 5.4755 -2.1260 -1.9607 33 1 5.9300 -3.6775 -1.0729 34 1 3.5383 -4.4977 -1.2818 35 1 3.0837 -2.9462 -2.1696 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665968169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:40 Heat of formation + Delta-G solvation = -23.963224 kcal Electronic energy + Delta-G solvation = -16453.363613 eV Core-core repulsion = 13872.640850 eV Total energy + Delta-G solvation = -2580.722762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27126 -38.92138 -36.37507 -34.94410 -33.21039 -31.69694 -29.60420 -27.58008 -25.11200 -24.09463 -23.13107 -21.33647 -20.13585 -19.24853 -18.10068 -17.04534 -16.71306 -16.28451 -16.04222 -15.43660 -15.04797 -14.90777 -14.22236 -13.86992 -13.71614 -13.39955 -13.21595 -13.06082 -12.89762 -12.78636 -12.39652 -12.21740 -12.04051 -12.00801 -11.75167 -11.23834 -11.07276 -10.91993 -10.47592 -9.89351 -8.95837 -7.96618 -5.22884 1.43458 1.45215 1.53655 1.81308 2.32206 2.54445 3.07793 3.35943 3.63776 3.89694 3.96235 4.06299 4.18242 4.25404 4.47023 4.49880 4.65830 4.71414 4.79686 4.86915 4.90294 4.98958 5.03181 5.12216 5.13281 5.30551 5.33470 5.44029 5.47848 5.75526 6.26265 6.78036 7.33311 7.45044 8.08155 8.37209 9.26381 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.008992 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.032391 B = 3113.135577 C = 3674.227649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.591 6.591 4 N -0.704 5.704 5 C 0.207 3.793 6 C -0.153 4.153 7 C 0.145 3.855 8 N -0.729 5.729 9 C -0.246 4.246 10 H 0.062 0.938 11 C -0.069 4.069 12 N -0.963 5.963 13 Si 0.970 3.030 14 H -0.289 1.289 15 H -0.289 1.289 16 H -0.274 1.274 17 C -0.176 4.176 18 C -0.166 4.166 19 C -0.152 4.152 20 H 0.099 0.901 21 H 0.085 0.915 22 H 0.110 0.890 23 H 0.408 0.592 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.378 0.622 30 H 0.252 0.748 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -1.844 -14.751 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.473 6.473 4 N -0.355 5.355 5 C 0.121 3.879 6 C -0.211 4.211 7 C 0.018 3.982 8 N -0.372 5.372 9 C -0.378 4.378 10 H 0.080 0.920 11 C -0.262 4.262 12 N -0.614 5.614 13 Si 0.799 3.201 14 H -0.217 1.217 15 H -0.216 1.216 16 H -0.199 1.199 17 C -0.195 4.195 18 C -0.203 4.203 19 C -0.189 4.189 20 H 0.118 0.882 21 H 0.104 0.896 22 H 0.128 0.872 23 H 0.244 0.756 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.211 0.789 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.518 -1.001 -14.661 14.910 hybrid contribution -0.002 -0.278 1.515 1.540 sum -2.520 -1.279 -13.146 13.447 Atomic orbital electron populations 1.21840 0.88962 1.05895 1.05396 1.21453 0.92050 0.83109 0.74248 1.90619 1.71690 1.33121 1.51830 1.46078 1.06827 1.08992 1.73622 1.19825 0.80038 0.93802 0.94283 1.22178 1.02146 1.00929 0.95867 1.21099 0.95815 0.94784 0.86533 1.42294 1.60651 1.33083 1.01170 1.19558 1.24111 1.08325 0.85817 0.91989 1.25436 1.01338 0.98449 1.00967 1.69777 1.41831 1.21287 1.28501 0.85200 0.77973 0.76869 0.80085 1.21666 1.21553 1.19943 1.22251 1.07556 0.94713 0.95009 1.23193 0.92971 1.03807 1.00339 1.23029 0.97613 1.00027 0.98251 0.88198 0.89587 0.87160 0.75580 0.92481 0.90686 0.90318 0.96699 0.96662 0.78913 0.93942 0.89668 0.87028 0.88355 0.87739 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.39 71.24 0.74 -2.95 16 2 C 0.50 16.83 7.35 87.66 0.64 17.48 16 3 O -0.59 -25.03 13.34 -3.02 -0.04 -25.07 16 4 N -0.70 -22.01 4.73 -422.93 -2.00 -24.01 16 5 C 0.21 6.98 0.54 3.60 0.00 6.98 16 6 C -0.15 -4.44 6.98 71.98 0.50 -3.93 16 7 C 0.15 6.62 5.03 86.38 0.43 7.05 16 8 N -0.73 -38.79 5.04 -343.45 -1.73 -40.52 16 9 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 10 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 11 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 12 N -0.96 -59.01 13.06 21.65 0.28 -58.73 16 13 Si 0.97 47.79 29.55 68.60 2.03 49.82 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 16 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 17 C -0.18 -5.32 4.84 -10.79 -0.05 -5.37 16 18 C -0.17 -3.86 9.64 30.62 0.30 -3.57 16 19 C -0.15 -3.23 9.82 30.62 0.30 -2.93 16 20 H 0.10 1.71 7.92 -2.39 -0.02 1.69 16 21 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 22 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.41 10.87 8.32 -92.70 -0.77 10.10 16 24 H 0.06 1.95 6.04 -2.39 -0.01 1.93 16 25 H 0.07 1.99 6.78 -2.39 -0.02 1.97 16 26 H 0.08 1.84 6.99 -2.39 -0.02 1.82 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.02 0.79 6.32 -2.39 -0.02 0.78 16 29 H 0.38 20.45 6.62 -92.71 -0.61 19.84 16 30 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.09 3.23 7.08 -2.39 -0.02 3.22 16 32 H 0.11 2.32 5.88 -2.39 -0.01 2.31 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.11 1.97 7.35 -2.39 -0.02 1.95 16 Total: -1.00 -72.33 283.26 2.43 -69.90 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.28 Total: 33.23 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.17 Total: -4.62 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -3.45 Total: -123.26 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -72.33 2.43 -69.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665968169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.939 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds