Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00012 * 180.02562 * 4 2 1 6 6 H 1.09003 * 110.01707 * 325.06458 * 5 4 2 7 7 C 1.53877 * 110.03598 * 86.45402 * 5 4 2 8 8 C 1.54262 * 106.59970 * 119.28680 * 7 5 4 9 9 C 1.54890 * 104.19417 * 23.61260 * 8 7 5 10 10 H 1.08997 * 110.75713 * 80.37812 * 9 8 7 11 11 C 1.53005 * 110.75256 * 203.55911 * 9 8 7 12 12 N 1.46502 * 109.47231 * 293.54564 * 11 9 8 13 13 C 1.36931 * 119.99861 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00329 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99753 * 180.02562 * 13 12 11 16 16 N 1.31609 * 120.00056 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99860 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47340 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47173 * 119.99909 * 17 15 13 20 20 H 1.48494 * 109.47206 * 240.00046 * 17 15 13 21 21 C 1.54266 * 110.03619 * 203.62575 * 5 4 2 22 22 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 25 25 H 0.96998 * 120.00166 * 0.02562 * 4 2 1 26 26 H 1.08997 * 110.03288 * 238.57771 * 7 5 4 27 27 H 1.09006 * 110.02394 * 0.02562 * 7 5 4 28 28 H 1.08995 * 110.48800 * 142.29348 * 8 7 5 29 29 H 1.09004 * 110.48243 * 264.93596 * 8 7 5 30 30 H 1.08996 * 109.47258 * 53.54733 * 11 9 8 31 31 H 1.09004 * 109.46930 * 173.54955 * 11 9 8 32 32 H 0.96999 * 119.99484 * 0.02562 * 12 11 9 33 33 H 0.97004 * 120.00195 * 179.97438 * 16 15 13 34 34 H 1.09001 * 110.48159 * 335.77988 * 21 5 4 35 35 H 1.08991 * 110.49272 * 98.42270 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0192 -0.3278 -0.5855 7 6 4.1725 -1.0776 1.4441 8 6 5.0027 -2.3542 1.6904 9 6 5.4295 -2.8091 0.2727 10 1 6.2869 -2.2336 -0.0759 11 6 5.7410 -4.3070 0.2548 12 7 6.9292 -4.5684 1.0710 13 6 7.4009 -5.8471 1.2037 14 1 6.8972 -6.6629 0.7064 15 6 8.5264 -6.0948 1.9775 16 7 9.1399 -5.1009 2.5840 17 14 9.1695 -7.8392 2.1592 18 1 8.3069 -8.7679 1.3853 19 1 10.5606 -7.9101 1.6445 20 1 9.1517 -8.2266 3.5926 21 6 4.1746 -2.4952 -0.5792 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 -0.5139 -0.8900 25 1 1.6959 -2.0072 0.0005 26 1 4.8020 -0.1950 1.5577 27 1 3.3379 -1.0344 2.1440 28 1 5.8787 -2.1282 2.2984 29 1 4.3922 -3.1198 2.1692 30 1 4.8932 -4.8593 0.6600 31 1 5.9269 -4.6273 -0.7704 32 1 7.3818 -3.8357 1.5173 33 1 9.9262 -5.2740 3.1250 34 1 3.4303 -3.2837 -0.4670 35 1 4.4462 -2.3722 -1.6276 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700888232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -47.221612 kcal Electronic energy + Delta-G solvation = -15479.092579 eV Core-core repulsion = 12897.361257 eV Total energy + Delta-G solvation = -2581.731322 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93997 -37.94004 -34.80560 -33.38685 -31.24097 -29.96982 -28.76835 -27.21556 -24.33880 -22.20980 -21.05510 -20.31407 -19.34559 -17.07276 -16.93578 -16.33484 -15.59391 -15.03432 -14.57150 -14.00769 -13.63745 -13.24738 -13.14463 -12.88032 -12.73283 -12.55326 -12.02567 -11.60238 -11.56743 -11.04063 -10.85405 -10.72033 -10.45939 -10.27781 -10.18392 -9.96005 -9.90738 -9.65495 -9.08165 -8.85481 -6.89145 -5.74747 -3.02944 2.54506 3.16562 3.44107 3.49501 3.51921 4.59159 4.60484 4.78961 4.81245 5.04396 5.08734 5.13523 5.49126 5.56173 5.57276 5.65325 5.70857 5.73294 5.89129 5.93995 6.10629 6.18907 6.29247 6.34786 6.49766 6.60672 6.64463 6.82563 6.95562 7.43466 7.71721 8.14577 8.44423 9.55577 10.14793 10.49478 11.48321 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.074461 B = 0.004494 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.946725 B = 6229.517066 C = 6370.748832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.550 6.550 4 N -0.724 5.724 5 C 0.139 3.861 6 H 0.088 0.912 7 C -0.133 4.133 8 C -0.111 4.111 9 C -0.096 4.096 10 H 0.078 0.922 11 C 0.162 3.838 12 N -0.732 5.732 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.120 4.120 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.400 0.600 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.411 7.207 -5.287 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.294 3.706 3 O -0.428 6.428 4 N -0.375 5.375 5 C 0.034 3.966 6 H 0.106 0.894 7 C -0.172 4.172 8 C -0.149 4.149 9 C -0.115 4.115 10 H 0.096 0.904 11 C 0.034 3.966 12 N -0.376 5.376 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.159 4.159 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.234 0.766 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.966 7.790 -5.312 18.542 hybrid contribution 0.327 -1.175 0.332 1.264 sum -15.639 6.615 -4.980 17.695 Atomic orbital electron populations 1.21928 0.92031 1.05341 1.04157 1.20812 0.90530 0.83727 0.75580 1.90720 1.70912 1.31485 1.49639 1.46305 1.07551 1.08542 1.75145 1.21714 0.78691 0.99081 0.97085 0.89419 1.22585 0.99787 0.99160 0.95637 1.22334 0.99573 0.95833 0.97166 1.22265 0.96431 0.98075 0.94778 0.90393 1.20623 0.90432 0.91081 0.94434 1.42356 1.29970 1.07113 1.58175 1.19286 1.07627 0.85593 1.24473 0.91202 1.24738 0.98521 0.97358 1.00462 1.69668 1.22220 1.29728 1.36594 0.86126 0.78562 0.84233 0.77335 1.20589 1.21886 1.21901 1.22616 0.98157 0.95468 0.99640 0.89167 0.89468 0.89525 0.76576 0.91451 0.91883 0.91053 0.91521 0.96427 0.96498 0.78222 0.93589 0.90943 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.32 36.01 0.37 -0.81 16 2 C 0.51 5.76 7.93 -10.98 -0.09 5.67 16 3 O -0.55 -8.85 16.76 5.56 0.09 -8.76 16 4 N -0.72 -7.38 4.99 -52.72 -0.26 -7.64 16 5 C 0.14 1.72 3.23 -66.81 -0.22 1.50 16 6 H 0.09 1.21 7.61 -51.93 -0.39 0.82 16 7 C -0.13 -1.80 6.59 -25.61 -0.17 -1.97 16 8 C -0.11 -1.73 5.97 -25.07 -0.15 -1.88 16 9 C -0.10 -1.53 2.95 -88.62 -0.26 -1.79 16 10 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.16 3.21 5.71 -4.04 -0.02 3.19 16 12 N -0.73 -18.60 5.45 -59.90 -0.33 -18.93 16 13 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 14 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 16 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 17 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 C -0.12 -1.48 5.98 -25.07 -0.15 -1.63 16 22 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 23 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.40 2.97 8.34 -40.82 -0.34 2.63 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.84 7.92 -51.93 -0.41 0.42 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 30 H 0.02 0.35 8.10 -51.93 -0.42 -0.07 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.38 10.26 7.53 -40.82 -0.31 9.95 16 33 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 0.80 7.64 -51.93 -0.40 0.41 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -33.23 291.69 -6.94 -40.17 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.61 Total: 6.12 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.93 Total: -5.12 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.13 Total: -54.28 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.23 -6.94 -40.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700888232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.052 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds