Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00012 * 180.02562 * 4 2 1 6 6 H 1.09003 * 110.01707 * 325.06458 * 5 4 2 7 7 C 1.53877 * 110.03598 * 86.45402 * 5 4 2 8 8 C 1.54262 * 106.59970 * 119.28680 * 7 5 4 9 9 C 1.54890 * 104.19417 * 23.61260 * 8 7 5 10 10 H 1.08997 * 110.75713 * 80.37812 * 9 8 7 11 11 C 1.53005 * 110.75256 * 203.55911 * 9 8 7 12 12 N 1.46502 * 109.47231 * 293.54564 * 11 9 8 13 13 C 1.36931 * 119.99861 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00329 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99753 * 180.02562 * 13 12 11 16 16 N 1.31609 * 120.00056 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99860 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47340 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47173 * 119.99909 * 17 15 13 20 20 H 1.48494 * 109.47206 * 240.00046 * 17 15 13 21 21 C 1.54266 * 110.03619 * 203.62575 * 5 4 2 22 22 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 25 25 H 0.96998 * 120.00166 * 0.02562 * 4 2 1 26 26 H 1.08997 * 110.03288 * 238.57771 * 7 5 4 27 27 H 1.09006 * 110.02394 * 0.02562 * 7 5 4 28 28 H 1.08995 * 110.48800 * 142.29348 * 8 7 5 29 29 H 1.09004 * 110.48243 * 264.93596 * 8 7 5 30 30 H 1.08996 * 109.47258 * 53.54733 * 11 9 8 31 31 H 1.09004 * 109.46930 * 173.54955 * 11 9 8 32 32 H 0.96999 * 119.99484 * 0.02562 * 12 11 9 33 33 H 0.97004 * 120.00195 * 179.97438 * 16 15 13 34 34 H 1.09001 * 110.48159 * 335.77988 * 21 5 4 35 35 H 1.08991 * 110.49272 * 98.42270 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0192 -0.3278 -0.5855 7 6 4.1725 -1.0776 1.4441 8 6 5.0027 -2.3542 1.6904 9 6 5.4295 -2.8091 0.2727 10 1 6.2869 -2.2336 -0.0759 11 6 5.7410 -4.3070 0.2548 12 7 6.9292 -4.5684 1.0710 13 6 7.4009 -5.8471 1.2037 14 1 6.8972 -6.6629 0.7064 15 6 8.5264 -6.0948 1.9775 16 7 9.1399 -5.1009 2.5840 17 14 9.1695 -7.8392 2.1592 18 1 8.3069 -8.7679 1.3853 19 1 10.5606 -7.9101 1.6445 20 1 9.1517 -8.2266 3.5926 21 6 4.1746 -2.4952 -0.5792 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 -0.5139 -0.8900 25 1 1.6959 -2.0072 0.0005 26 1 4.8020 -0.1950 1.5577 27 1 3.3379 -1.0344 2.1440 28 1 5.8787 -2.1282 2.2984 29 1 4.3922 -3.1198 2.1692 30 1 4.8932 -4.8593 0.6600 31 1 5.9269 -4.6273 -0.7704 32 1 7.3818 -3.8357 1.5173 33 1 9.9262 -5.2740 3.1250 34 1 3.4303 -3.2837 -0.4670 35 1 4.4462 -2.3722 -1.6276 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700888232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -70.906798 kcal Electronic energy + Delta-G solvation = -15480.119646 eV Core-core repulsion = 12897.361257 eV Total energy + Delta-G solvation = -2582.758389 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92535 -39.12905 -36.45233 -34.74911 -32.99840 -30.89084 -30.10595 -28.42679 -26.09029 -23.95889 -22.02320 -21.42960 -20.60065 -19.08905 -17.84365 -17.42220 -16.73474 -16.53564 -15.90835 -15.51694 -15.07641 -14.87100 -14.54787 -14.13619 -13.57385 -13.39901 -13.17167 -13.12969 -12.81848 -12.64693 -12.52998 -12.11116 -12.07582 -11.78991 -11.62504 -11.50567 -11.45177 -10.91692 -10.88935 -10.05050 -8.97485 -7.94059 -5.22521 1.48096 1.48967 1.59099 1.68809 2.32939 2.57429 3.39706 3.56819 3.61027 3.88926 4.01881 4.17073 4.40917 4.50871 4.51442 4.56670 4.61857 4.68364 4.71588 4.77892 4.91532 5.01602 5.07838 5.14386 5.19574 5.25048 5.36702 5.49089 5.55062 5.64253 6.28578 6.64463 7.32981 7.34657 8.12494 8.34845 9.29978 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.074461 B = 0.004494 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.946725 B = 6229.517066 C = 6370.748832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.500 3.500 3 O -0.605 6.605 4 N -0.712 5.712 5 C 0.145 3.855 6 H 0.073 0.927 7 C -0.125 4.125 8 C -0.106 4.106 9 C -0.092 4.092 10 H 0.066 0.934 11 C 0.161 3.839 12 N -0.747 5.747 13 C -0.244 4.244 14 H 0.077 0.923 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.264 1.264 19 H -0.294 1.294 20 H -0.294 1.294 21 C -0.105 4.105 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.417 0.583 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.020 0.980 32 H 0.373 0.627 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.522 6.147 -6.176 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.486 6.486 4 N -0.364 5.364 5 C 0.039 3.961 6 H 0.091 0.909 7 C -0.163 4.163 8 C -0.144 4.144 9 C -0.112 4.112 10 H 0.084 0.916 11 C 0.034 3.966 12 N -0.389 5.389 13 C -0.376 4.376 14 H 0.095 0.905 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.803 3.197 18 H -0.189 1.189 19 H -0.221 1.221 20 H -0.221 1.221 21 C -0.143 4.143 22 H 0.105 0.895 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.255 0.745 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.205 0.795 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.140 6.688 -6.233 20.314 hybrid contribution 0.941 -0.831 0.588 1.386 sum -17.200 5.857 -5.645 19.027 Atomic orbital electron populations 1.21930 0.88053 1.05950 1.06485 1.21682 0.92401 0.82887 0.74061 1.90703 1.72334 1.33397 1.52185 1.46184 1.06531 1.09368 1.74360 1.21458 0.80245 0.98600 0.95754 0.90851 1.22491 0.99474 0.97552 0.96830 1.22231 0.98807 0.96741 0.96624 1.22150 0.97897 0.95248 0.95867 0.91602 1.20801 0.88534 0.93776 0.93448 1.42603 1.31478 1.06018 1.58803 1.19714 1.07423 0.86877 1.23573 0.90492 1.25584 0.99231 1.01298 1.00880 1.69829 1.22746 1.31853 1.37798 0.85063 0.77724 0.79854 0.77063 1.18851 1.22140 1.22082 1.22504 0.96563 0.95787 0.99457 0.89518 0.87187 0.86869 0.74545 0.92418 0.91285 0.93604 0.91723 0.95633 0.96158 0.79517 0.94073 0.88885 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.32 71.24 0.74 -0.96 16 2 C 0.50 10.40 7.93 87.66 0.69 11.09 16 3 O -0.60 -19.20 16.76 -3.03 -0.05 -19.25 16 4 N -0.71 -12.69 4.99 -439.10 -2.19 -14.88 16 5 C 0.14 3.37 3.23 45.72 0.15 3.51 16 6 H 0.07 1.98 7.61 -2.39 -0.02 1.96 16 7 C -0.12 -3.31 6.59 31.32 0.21 -3.11 16 8 C -0.11 -3.29 5.97 31.67 0.19 -3.10 16 9 C -0.09 -2.87 2.95 -9.50 -0.03 -2.89 16 10 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 11 C 0.16 6.22 5.71 86.38 0.49 6.71 16 12 N -0.75 -38.14 5.45 -343.43 -1.87 -40.01 16 13 C -0.24 -13.70 9.99 84.04 0.84 -12.86 16 14 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 15 C -0.08 -4.51 5.50 84.87 0.47 -4.04 16 16 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 17 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 21 C -0.10 -2.32 5.98 31.67 0.19 -2.13 16 22 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 23 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 24 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.42 4.64 8.34 -92.71 -0.77 3.87 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.75 7.92 -2.38 -0.02 1.73 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 2.02 8.02 -2.39 -0.02 2.00 16 30 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 31 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.37 20.43 7.53 -92.71 -0.70 19.74 16 33 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.09 1.72 7.64 -2.39 -0.02 1.70 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.38 291.69 1.74 -70.64 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -0.39 Total: 22.90 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 3.93 Total: -7.78 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -3.78 Total: -114.79 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.38 1.74 -70.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700888232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.264 kcal (2) G-P(sol) polarization free energy of solvation -72.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds